Wall clock time and date at job start Mon Mar 30 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35700 * 116.99601 * 2 1 4 4 C 1.38642 * 120.15399 * 359.97438 * 3 2 1 5 5 C 1.38112 * 120.09525 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.80456 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00140 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99993 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00130 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47108 * 89.99504 * 15 13 11 17 17 H 1.48498 * 109.47097 * 209.99712 * 15 13 11 18 18 H 1.48499 * 109.46508 * 329.99366 * 15 13 11 19 19 C 1.38514 * 120.38766 * 0.27608 * 5 4 3 20 20 C 1.37819 * 120.30069 * 359.49065 * 19 5 4 21 21 C 1.39723 * 119.89902 * 0.48504 * 20 19 5 22 22 C 1.43195 * 120.19403 * 179.74708 * 21 20 19 23 23 N 3.53306 * 165.92439 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47150 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.46848 * 59.99953 * 1 2 3 26 26 H 1.08996 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.95445 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47558 * 330.00303 * 6 5 4 29 29 H 1.08998 * 109.47216 * 209.99966 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 34 34 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 35 35 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 36 36 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 37 37 H 0.96999 * 120.00009 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.84871 * 179.72021 * 19 5 4 39 39 H 1.08001 * 120.05457 * 180.23410 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2930 2.3739 -0.0005 5 6 1.9212 3.6038 0.0000 6 6 1.0973 4.8657 0.0000 7 7 0.8291 5.2754 1.3850 8 6 0.0258 6.5046 1.4242 9 6 -0.2318 6.8993 2.8798 10 6 -1.0680 8.1799 2.9206 11 6 -1.3223 8.5683 4.3543 12 1 -0.9267 7.9626 5.1562 13 6 -2.0591 9.6976 4.6423 14 7 -2.2814 10.0363 5.8935 15 14 -2.7427 10.7457 3.2554 16 1 -4.0963 10.2584 2.8877 17 1 -2.8296 12.1599 3.7002 18 1 -1.8454 10.6521 2.0758 19 6 3.3040 3.6844 -0.0047 20 6 4.0674 2.5369 0.0006 21 6 3.4447 1.2861 0.0006 22 6 4.2317 0.0898 0.0006 23 7 4.8561 -0.8592 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2144 2.3193 -0.0014 28 1 0.1536 4.6835 -0.5142 29 1 1.6441 5.6566 -0.5134 30 1 1.6885 5.3880 1.9016 31 1 0.5648 7.3071 0.9205 32 1 -0.9252 6.3334 0.9200 33 1 -0.7706 6.0970 3.3838 34 1 0.7194 7.0707 3.3836 35 1 -0.5289 8.9821 2.4167 36 1 -2.0193 8.0090 2.4166 37 1 -2.8001 10.8305 6.0962 38 1 3.7861 4.6508 -0.0088 39 1 5.1453 2.6044 0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281597048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:19 Heat of formation + Delta-G solvation = -16.809474 kcal Electronic energy + Delta-G solvation = -19379.301454 eV Core-core repulsion = 16285.984339 eV Total energy + Delta-G solvation = -3093.317115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38330 -38.95888 -37.90659 -37.18225 -35.43136 -33.82022 -32.21366 -31.24815 -29.02603 -28.16541 -26.43078 -23.77384 -23.32373 -22.77266 -21.74693 -20.23508 -18.89037 -18.27381 -17.56586 -16.83143 -16.67013 -16.38458 -15.82484 -15.51515 -15.41230 -15.11200 -14.87195 -14.86193 -14.67004 -14.29797 -13.89167 -13.72079 -13.43480 -13.16994 -13.14373 -12.80317 -12.60701 -12.47095 -12.36066 -12.08417 -11.96304 -11.74915 -11.47189 -11.38401 -11.21907 -10.73004 -9.94708 -9.36757 -9.19930 -8.26075 -6.30386 -0.26038 0.40297 1.39316 1.41356 1.53316 1.62777 1.89285 2.20738 2.39652 2.78534 2.88810 3.09482 3.41876 3.73043 3.87426 4.10812 4.25240 4.33059 4.34332 4.40763 4.41609 4.47324 4.63803 4.71224 4.75826 4.78209 4.88863 4.98290 5.04502 5.12201 5.18517 5.25139 5.55603 5.58015 5.67494 5.68449 5.71120 6.11332 6.22595 6.33600 6.48698 6.52000 6.78919 7.34310 8.90987 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.002647 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.490359 B =10575.750148 C =10793.986630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.168 3.832 4 C -0.190 4.190 5 C -0.008 4.008 6 C 0.091 3.909 7 N -0.692 5.692 8 C 0.071 3.929 9 C -0.092 4.092 10 C -0.011 4.011 11 C -0.533 4.533 12 H 0.028 0.972 13 C -0.002 4.002 14 N -0.955 5.955 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.241 1.241 19 C -0.148 4.148 20 C -0.023 4.023 21 C -0.089 4.089 22 C 0.285 3.715 23 N -0.472 5.472 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.346 0.654 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -14.371 -18.976 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.010 4.010 6 C -0.037 4.037 7 N -0.324 5.324 8 C -0.058 4.058 9 C -0.131 4.131 10 C -0.049 4.049 11 C -0.571 4.571 12 H 0.046 0.954 13 C -0.198 4.198 14 N -0.596 5.596 15 Si 0.779 3.221 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.164 1.164 19 C -0.167 4.167 20 C -0.043 4.043 21 C -0.094 4.094 22 C -0.028 4.028 23 N -0.149 5.149 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.134 0.866 27 H 0.169 0.831 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.494 -16.340 -18.816 26.328 hybrid contribution -0.306 1.489 0.101 1.524 sum 8.189 -14.850 -18.715 25.255 Atomic orbital electron populations 1.23435 0.75553 1.05746 1.03004 1.86047 1.24218 1.26841 1.87658 1.19056 0.90420 0.85284 0.93381 1.21200 1.01251 0.90550 1.07922 1.19959 0.94058 0.94239 0.92709 1.21035 0.99468 0.93123 0.90075 1.60474 1.24244 1.34582 1.13075 1.21894 0.97947 0.89791 0.96153 1.21271 0.99133 0.96763 0.95884 1.19501 0.95990 0.95095 0.94305 1.21563 1.32864 1.09514 0.93175 0.95400 1.26120 0.96281 0.99103 0.98322 1.70091 1.41881 1.27129 1.20527 0.85579 0.79583 0.77160 0.79820 1.19175 1.21304 1.16442 1.21181 0.92632 0.99458 1.03430 1.21226 1.01451 0.88610 0.93035 1.15528 0.88267 0.88510 1.17062 1.25718 0.92366 0.92624 0.92117 1.81216 1.10810 1.11311 1.11574 0.91391 0.90653 0.86594 0.83112 0.89234 0.92190 0.83576 0.94442 0.90778 0.93462 0.93547 0.96001 0.96162 0.92603 0.82595 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.18 9.93 -90.20 -0.90 -7.07 16 3 C 0.17 2.94 6.69 22.84 0.15 3.10 16 4 C -0.19 -2.82 8.67 22.34 0.19 -2.63 16 5 C -0.01 -0.11 5.40 -19.83 -0.11 -0.22 16 6 C 0.09 1.33 5.80 85.55 0.50 1.82 16 7 N -0.69 -14.35 6.49 -517.92 -3.36 -17.72 16 8 C 0.07 1.82 5.69 86.30 0.49 2.31 16 9 C -0.09 -3.33 5.41 30.59 0.17 -3.16 16 10 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 11 C -0.53 -30.51 9.66 25.60 0.25 -30.26 16 12 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 13 C 0.00 -0.13 5.47 84.65 0.46 0.34 16 14 N -0.96 -60.04 13.96 21.45 0.30 -59.74 16 15 Si 0.96 43.26 27.47 68.60 1.88 45.14 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 19 C -0.15 -1.69 9.67 22.24 0.22 -1.48 16 20 C -0.02 -0.29 9.76 22.53 0.22 -0.07 16 21 C -0.09 -1.57 5.75 -21.21 -0.12 -1.70 16 22 C 0.29 6.48 14.87 88.33 1.31 7.79 16 23 N -0.47 -12.93 18.54 19.00 0.35 -12.58 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.15 1.86 6.30 -2.91 -0.02 1.85 16 28 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 29 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.35 6.85 8.72 -89.69 -0.78 6.07 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 36 H 0.02 0.86 7.57 -2.38 -0.02 0.85 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -72.25 338.23 3.46 -68.79 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.22 Total: 6.40 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 4.96 Total: -23.23 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -2.71 Total: -90.03 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.90 Total: -7.07 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -72.25 3.46 -68.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281597048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.983 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds