Wall clock time and date at job start Mon Mar 30 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99658 * 90.00442 * 6 5 4 8 8 C 1.50701 * 109.47310 * 89.99973 * 7 6 5 9 9 H 1.07997 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99877 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47306 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46804 * 120.00246 * 12 10 8 15 15 H 1.48498 * 109.47100 * 239.99886 * 12 10 8 16 16 C 1.38650 * 120.00121 * 270.00084 * 6 5 4 17 17 C 1.39615 * 120.03579 * 5.00162 * 16 6 5 18 18 C 1.38257 * 118.03240 * 179.97438 * 17 16 6 19 19 C 1.40154 * 117.97541 * 359.97438 * 18 17 16 20 20 C 1.43200 * 120.10671 * 179.97438 * 19 18 17 21 21 N 9.14534 * 135.89544 * 155.54944 * 2 1 3 22 22 N 1.32797 * 119.78612 * 0.02562 * 19 18 17 23 23 N 1.28361 * 122.09520 * 359.73454 * 22 19 18 24 24 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 25 25 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 27 27 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 28 28 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 30 30 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 31 31 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 32 32 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 35 35 H 1.08998 * 109.46888 * 209.99779 * 7 6 5 36 36 H 1.08994 * 109.47490 * 329.99842 * 7 6 5 37 37 H 0.97000 * 119.99433 * 179.97438 * 11 10 8 38 38 H 1.07999 * 120.98347 * 359.95363 * 17 16 6 39 39 H 1.08002 * 121.01213 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.2828 -2.9586 3.5819 8 6 0.4286 -4.1987 3.5220 9 1 0.5039 -4.8659 2.6761 10 6 -0.4490 -4.4815 4.5472 11 7 -0.5403 -3.6693 5.5775 12 14 -1.5082 -6.0183 4.4725 13 1 -1.2179 -6.7593 3.2188 14 1 -1.2063 -6.8847 5.6403 15 1 -2.9421 -5.6330 4.4996 16 6 3.3802 -3.4711 2.3827 17 6 4.2230 -3.3137 1.2809 18 6 5.4676 -3.9143 1.3237 19 6 5.8064 -4.6438 2.4715 20 6 7.0835 -5.2850 2.5642 21 7 8.0970 -5.7941 2.6345 22 7 4.9389 -4.7393 3.4724 23 7 3.7858 -4.1768 3.4316 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6769 1.9563 0.8901 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6445 1.2950 33 1 0.5489 -2.2724 1.1419 34 1 2.0698 -2.6550 0.3000 35 1 1.9160 -2.9961 4.4683 36 1 0.6421 -2.0782 3.6301 37 1 -1.1580 -3.8681 6.2985 38 1 3.9119 -2.7401 0.4203 39 1 6.1577 -3.8241 0.4979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301914388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:45 Heat of formation + Delta-G solvation = 79.774528 kcal Electronic energy + Delta-G solvation = -20584.687367 eV Core-core repulsion = 17527.851200 eV Total energy + Delta-G solvation = -3056.836167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66507 -37.84906 -36.45001 -35.58600 -33.10210 -32.65820 -31.24206 -29.36805 -27.23508 -26.91544 -25.00678 -24.10788 -23.10091 -21.16108 -19.97595 -19.41324 -17.21507 -16.98144 -16.44485 -15.34242 -14.94071 -14.89209 -14.47820 -14.29044 -13.95708 -13.74986 -13.29393 -13.08810 -12.90041 -12.70930 -12.59193 -12.50672 -12.23987 -11.91965 -11.41716 -11.38120 -11.15054 -11.01653 -10.86481 -10.69418 -10.67048 -10.49087 -10.32086 -10.12853 -10.00924 -9.44693 -9.14712 -8.50923 -7.28914 -6.11478 -4.17723 1.01147 1.14898 2.69120 3.09905 3.26057 3.29536 3.35181 3.39834 3.84398 4.12432 4.38230 4.70162 4.79221 4.81348 4.89769 4.92779 5.02893 5.11163 5.22915 5.27365 5.48882 5.58111 5.63869 5.65654 5.76638 5.79931 5.88786 5.96727 6.01945 6.08343 6.16336 6.16714 6.37618 6.41225 6.83234 7.26220 7.54650 7.61909 7.83383 7.90473 8.09767 8.84445 9.19158 9.47710 10.95391 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.007384 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.419951 B = 3790.947138 C = 6500.299677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.135 4.135 5 C 0.116 3.884 6 N -0.557 5.557 7 C 0.246 3.754 8 C -0.527 4.527 9 H 0.058 0.942 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.284 1.284 16 C 0.370 3.630 17 C -0.199 4.199 18 C -0.037 4.037 19 C 0.028 3.972 20 C 0.292 3.708 21 N -0.421 5.421 22 N -0.147 5.147 23 N -0.268 5.268 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.150 0.850 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 8.386 -13.078 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.174 4.174 5 C -0.008 4.008 6 N -0.260 5.260 7 C 0.128 3.872 8 C -0.566 4.566 9 H 0.076 0.924 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.210 1.210 16 C 0.126 3.874 17 C -0.232 4.232 18 C -0.066 4.066 19 C -0.122 4.122 20 C -0.025 4.025 21 N -0.099 5.099 22 N 0.003 4.997 23 N -0.125 5.125 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.167 0.833 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.150 7.213 -11.316 14.374 hybrid contribution -0.793 -0.118 -1.358 1.577 sum 4.357 7.095 -12.675 15.164 Atomic orbital electron populations 1.21922 0.95019 1.02351 1.01645 1.21050 0.96156 0.96021 0.97936 1.21830 1.00767 0.96111 1.01657 1.22137 1.01113 0.95595 0.98570 1.21690 1.01182 0.91110 0.86796 1.47353 1.11850 1.50708 1.16079 1.19535 0.89282 0.97440 0.80969 1.21367 1.21357 1.07815 1.06021 0.92396 1.24883 0.97022 0.96789 0.95004 1.69925 1.37162 1.36950 1.08969 0.86466 0.79801 0.83063 0.78236 1.19862 1.20740 1.21010 1.20315 0.87608 0.88708 0.90746 1.21735 0.94707 1.06247 1.00545 1.21822 0.96003 0.92342 0.96460 1.17637 0.91934 1.06178 0.96455 1.24726 0.91714 0.92751 0.93288 1.81215 1.11579 1.09388 1.07731 1.73272 0.96240 1.09101 1.21089 1.73590 1.06507 1.10704 1.21660 0.93073 0.92027 0.92406 0.91321 0.92865 0.92912 0.92622 0.90954 0.91893 0.88867 0.91346 0.93014 0.94559 0.92642 0.83278 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.95 37.16 0.33 -1.15 16 2 C -0.09 -0.86 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 4 C -0.14 -1.56 5.00 -26.73 -0.13 -1.69 16 5 C 0.12 1.59 4.80 -4.04 -0.02 1.57 16 6 N -0.56 -10.16 2.56 -175.06 -0.45 -10.61 16 7 C 0.25 5.73 5.15 -5.19 -0.03 5.71 16 8 C -0.53 -13.72 9.39 -34.44 -0.32 -14.04 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 12 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.37 6.59 7.44 -154.87 -1.15 5.43 16 17 C -0.20 -2.60 9.18 -39.06 -0.36 -2.96 16 18 C -0.04 -0.44 9.91 -38.86 -0.38 -0.83 16 19 C 0.03 0.42 6.67 -84.80 -0.57 -0.14 16 20 C 0.29 4.47 15.57 -22.46 -0.35 4.12 16 21 N -0.42 -6.87 18.54 41.85 0.78 -6.09 16 22 N -0.15 -2.82 11.44 32.29 0.37 -2.45 16 23 N -0.27 -5.58 10.33 31.23 0.32 -5.26 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.09 1.36 6.49 -51.93 -0.34 1.03 16 34 H 0.07 0.78 6.41 -51.93 -0.33 0.45 16 35 H 0.05 1.35 7.46 -51.93 -0.39 0.97 16 36 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.15 1.47 6.35 -52.49 -0.33 1.14 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -29.57 337.24 -6.68 -36.25 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.50 Total: -4.25 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.00 Total: -4.35 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 1.76 Total: -48.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.57 -6.68 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301914388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.027 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds