Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99658 * 90.00442 * 6 5 4 8 8 C 1.50701 * 109.47310 * 89.99973 * 7 6 5 9 9 H 1.07997 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99877 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47306 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46804 * 120.00246 * 12 10 8 15 15 H 1.48498 * 109.47100 * 239.99886 * 12 10 8 16 16 C 1.38650 * 120.00121 * 270.00084 * 6 5 4 17 17 C 1.39615 * 120.03579 * 5.00162 * 16 6 5 18 18 C 1.38257 * 118.03240 * 179.97438 * 17 16 6 19 19 C 1.40154 * 117.97541 * 359.97438 * 18 17 16 20 20 C 1.43200 * 120.10671 * 179.97438 * 19 18 17 21 21 N 9.14534 * 135.89544 * 155.54944 * 2 1 3 22 22 N 1.32797 * 119.78612 * 0.02562 * 19 18 17 23 23 N 1.28361 * 122.09520 * 359.73454 * 22 19 18 24 24 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 25 25 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 27 27 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 28 28 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 30 30 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 31 31 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 32 32 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 35 35 H 1.08998 * 109.46888 * 209.99779 * 7 6 5 36 36 H 1.08994 * 109.47490 * 329.99842 * 7 6 5 37 37 H 0.97000 * 119.99433 * 179.97438 * 11 10 8 38 38 H 1.07999 * 120.98347 * 359.95363 * 17 16 6 39 39 H 1.08002 * 121.01213 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.2828 -2.9586 3.5819 8 6 0.4286 -4.1987 3.5220 9 1 0.5039 -4.8659 2.6761 10 6 -0.4490 -4.4815 4.5472 11 7 -0.5403 -3.6693 5.5775 12 14 -1.5082 -6.0183 4.4725 13 1 -1.2179 -6.7593 3.2188 14 1 -1.2063 -6.8847 5.6403 15 1 -2.9421 -5.6330 4.4996 16 6 3.3802 -3.4711 2.3827 17 6 4.2230 -3.3137 1.2809 18 6 5.4676 -3.9143 1.3237 19 6 5.8064 -4.6438 2.4715 20 6 7.0835 -5.2850 2.5642 21 7 8.0970 -5.7941 2.6345 22 7 4.9389 -4.7393 3.4724 23 7 3.7858 -4.1768 3.4316 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6769 1.9563 0.8901 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6445 1.2950 33 1 0.5489 -2.2724 1.1419 34 1 2.0698 -2.6550 0.3000 35 1 1.9160 -2.9961 4.4683 36 1 0.6421 -2.0782 3.6301 37 1 -1.1580 -3.8681 6.2985 38 1 3.9119 -2.7401 0.4203 39 1 6.1577 -3.8241 0.4979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301914388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = 63.563882 kcal Electronic energy + Delta-G solvation = -20585.390313 eV Core-core repulsion = 17527.851200 eV Total energy + Delta-G solvation = -3057.539113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.94283 -39.01792 -37.66688 -36.69130 -34.85999 -34.03949 -32.52844 -30.69893 -28.53966 -27.91464 -26.20732 -25.64252 -24.43231 -22.50317 -20.80675 -20.62055 -18.67054 -18.44166 -18.10493 -16.58673 -16.41671 -16.10948 -15.59806 -15.49684 -15.06801 -14.85782 -14.47630 -14.35864 -14.22711 -14.06320 -13.85372 -13.61907 -13.25430 -13.18171 -12.93650 -12.68179 -12.58303 -12.42537 -12.23730 -12.13709 -11.89445 -11.55519 -11.45127 -11.35472 -11.22550 -11.09211 -10.59697 -10.38791 -8.75217 -8.12572 -6.29461 -0.22722 0.03563 1.38034 1.41680 1.43938 1.51149 1.84671 2.02326 2.41612 2.60501 2.87724 3.14216 3.58991 3.66330 3.90406 3.95923 4.05089 4.08672 4.17063 4.32112 4.55284 4.64942 4.74719 4.82615 4.87427 4.92866 4.96479 5.08614 5.13358 5.16812 5.21219 5.24615 5.34287 5.42263 5.55286 5.61819 5.70066 6.08148 6.19776 6.31539 6.45245 6.81284 7.39365 7.90438 8.89503 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.007384 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.419951 B = 3790.947138 C = 6500.299677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.126 4.126 5 C 0.115 3.885 6 N -0.569 5.569 7 C 0.268 3.732 8 C -0.529 4.529 9 H 0.051 0.949 10 C 0.014 3.986 11 N -0.926 5.926 12 Si 0.956 3.044 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.350 3.650 17 C -0.174 4.174 18 C -0.016 4.016 19 C 0.038 3.962 20 C 0.307 3.693 21 N -0.435 5.435 22 N -0.191 5.191 23 N -0.329 5.329 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.013 0.987 36 H 0.021 0.979 37 H 0.265 0.735 38 H 0.194 0.806 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 8.607 -16.555 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.165 4.165 5 C -0.007 4.007 6 N -0.275 5.275 7 C 0.147 3.853 8 C -0.568 4.568 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.566 5.566 12 Si 0.782 3.218 13 H -0.193 1.193 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.107 3.893 17 C -0.207 4.207 18 C -0.045 4.045 19 C -0.115 4.115 20 C -0.010 4.010 21 N -0.113 5.113 22 N -0.038 5.038 23 N -0.184 5.184 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.211 0.789 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.351 7.428 -14.803 17.739 hybrid contribution -1.014 -0.195 -0.321 1.081 sum 5.338 7.233 -15.124 17.594 Atomic orbital electron populations 1.21939 0.95759 1.01808 1.01626 1.21034 0.95475 0.96520 0.97416 1.21820 1.01304 0.95413 1.01716 1.22053 1.01550 0.94160 0.98707 1.21917 1.00564 0.92188 0.86062 1.47119 1.12014 1.52481 1.15855 1.18837 0.88554 0.95630 0.82288 1.21645 1.21261 1.08432 1.05438 0.93061 1.25674 0.98478 0.99515 0.94856 1.70035 1.38184 1.38685 1.09731 0.85536 0.78664 0.79644 0.77966 1.19342 1.21168 1.19866 1.20637 0.87957 0.88786 0.91912 1.22135 0.93737 1.05132 0.99733 1.22356 0.96177 0.89733 0.96250 1.17931 0.91056 1.05525 0.96939 1.24619 0.91396 0.92296 0.92723 1.81241 1.12156 1.09682 1.08256 1.73142 0.96741 1.10653 1.23277 1.73431 1.07752 1.12997 1.24247 0.91484 0.92852 0.94060 0.88933 0.91989 0.91620 0.93867 0.93814 0.90794 0.90474 0.87913 0.96898 0.96123 0.92621 0.78946 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.95 71.98 0.64 -2.16 16 2 C -0.09 -1.36 2.92 -10.80 -0.03 -1.39 16 3 C -0.15 -2.09 9.19 71.98 0.66 -1.43 16 4 C -0.13 -2.72 5.00 30.59 0.15 -2.56 16 5 C 0.11 2.98 4.80 86.38 0.41 3.39 16 6 N -0.57 -20.94 2.56 -707.78 -1.81 -22.75 16 7 C 0.27 13.15 5.15 85.63 0.44 13.59 16 8 C -0.53 -28.50 9.39 25.60 0.24 -28.26 16 9 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 10 C 0.01 0.77 5.46 84.65 0.46 1.23 16 11 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 12 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 16 C 0.35 12.22 7.44 133.19 0.99 13.21 16 17 C -0.17 -3.87 9.18 22.61 0.21 -3.66 16 18 C -0.02 -0.32 9.91 22.74 0.23 -0.10 16 19 C 0.04 1.08 6.67 40.71 0.27 1.35 16 20 C 0.31 8.73 15.57 88.33 1.38 10.10 16 21 N -0.43 -13.37 18.54 19.01 0.35 -13.01 16 22 N -0.19 -7.39 11.44 -51.75 -0.59 -7.98 16 23 N -0.33 -14.08 10.33 -55.12 -0.57 -14.65 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.05 6.57 -2.39 -0.02 1.04 16 26 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 33 H 0.08 2.25 6.49 -2.39 -0.02 2.23 16 34 H 0.10 1.93 6.41 -2.39 -0.02 1.91 16 35 H 0.01 0.73 7.46 -2.39 -0.02 0.71 16 36 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 37 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.19 2.56 6.35 -2.91 -0.02 2.54 16 39 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -69.27 337.24 6.79 -62.48 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.05 Total: 0.46 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.06 Total: 3.31 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -2.34 Total: -112.26 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.27 6.79 -62.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301914388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.046 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds