Wall clock time and date at job start Mon Mar 30 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 N 1.46502 * 109.47240 * 240.00173 * 2 1 3 5 5 N 1.39834 * 125.38509 * 59.68806 * 4 2 1 6 6 C 1.30239 * 110.09176 * 179.84290 * 5 4 2 7 7 C 1.45862 * 107.65371 * 0.41075 * 6 5 4 8 8 C 1.39997 * 134.25710 * 179.69279 * 7 6 5 9 9 C 1.37019 * 118.15420 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.17819 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.46993 * 270.01607 * 10 9 8 12 12 C 1.46504 * 120.00303 * 270.00092 * 11 10 9 13 13 C 1.36932 * 119.99765 * 90.00087 * 11 10 9 14 14 H 1.08004 * 120.00267 * 22.37022 * 13 11 10 15 15 C 1.38818 * 120.00050 * 202.37673 * 13 11 10 16 16 N 1.31616 * 119.99748 * 11.32197 * 15 13 11 17 17 Si 1.86803 * 120.00091 * 191.32964 * 15 13 11 18 18 H 1.48497 * 109.47035 * 59.99534 * 17 15 13 19 19 H 1.48494 * 109.47022 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46823 * 299.99822 * 17 15 13 21 21 C 1.38816 * 119.64654 * 359.97438 * 9 8 7 22 22 N 1.31506 * 121.58718 * 0.02562 * 21 9 8 23 23 C 1.32764 * 121.47151 * 359.97438 * 22 21 9 24 24 H 1.09000 * 109.47150 * 60.00240 * 1 2 3 25 25 H 1.08998 * 109.46805 * 299.99366 * 1 2 3 26 26 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47427 * 120.00232 * 2 1 3 28 28 H 1.09001 * 109.46497 * 300.00136 * 3 2 1 29 29 H 1.08994 * 109.47093 * 60.00220 * 3 2 1 30 30 H 1.08997 * 109.47241 * 180.02562 * 3 2 1 31 31 H 1.07999 * 126.17455 * 180.16083 * 6 5 4 32 32 H 1.07995 * 120.92459 * 0.02562 * 8 7 6 33 33 H 1.08995 * 109.47519 * 30.01986 * 10 9 8 34 34 H 1.09004 * 109.46978 * 150.01966 * 10 9 8 35 35 H 1.09002 * 109.47022 * 94.20320 * 12 11 10 36 36 H 1.08999 * 109.46893 * 214.20860 * 12 11 10 37 37 H 1.09000 * 109.46842 * 334.20629 * 12 11 10 38 38 H 0.97007 * 119.99769 * 179.97438 * 16 15 13 39 39 H 1.07994 * 119.20231 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7458 -0.3158 -2.5155 6 6 2.3308 -1.1340 -3.3430 7 6 3.0382 -2.1337 -2.5506 8 6 3.8255 -3.2487 -2.8618 9 6 4.3447 -3.9824 -1.8276 10 6 5.1980 -5.1919 -2.1104 11 7 4.3460 -6.3802 -2.2010 12 6 4.0579 -7.1685 -1.0001 13 6 3.8188 -6.7542 -3.4082 14 1 4.2864 -6.4290 -4.3258 15 6 2.6832 -7.5514 -3.4526 16 7 1.9853 -7.7641 -2.3572 17 14 2.1457 -8.3222 -5.0671 18 1 3.2246 -9.2060 -5.5770 19 1 0.9137 -9.1217 -4.8479 20 1 1.8719 -7.2521 -6.0596 21 6 4.0804 -3.6057 -0.5179 22 7 3.3391 -2.5558 -0.2394 23 6 2.8094 -1.8070 -1.1992 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 2.2950 -1.0839 -4.4212 32 1 4.0183 -3.5229 -3.8884 33 1 5.7267 -5.0512 -3.0531 34 1 5.9203 -5.3233 -1.3047 35 1 3.1182 -6.8325 -0.5618 36 1 3.9780 -8.2221 -1.2677 37 1 4.8634 -7.0371 -0.2776 38 1 1.1915 -8.3209 -2.3883 39 1 4.4936 -4.1889 0.2917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330499558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:54 Heat of formation + Delta-G solvation = 121.678854 kcal Electronic energy + Delta-G solvation = -21017.127377 eV Core-core repulsion = 17962.108318 eV Total energy + Delta-G solvation = -3055.019059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12712 -38.07931 -35.57637 -35.32241 -32.59264 -31.07298 -29.90129 -29.24732 -27.33955 -26.06142 -25.48685 -23.49564 -22.82286 -21.99205 -20.42506 -19.46179 -17.53229 -16.80397 -16.18737 -15.49796 -15.22873 -14.83028 -14.49750 -14.26570 -13.68389 -13.47758 -13.17817 -13.01869 -12.89354 -12.41578 -12.37037 -12.13937 -11.93944 -11.57264 -11.40025 -11.25543 -11.22211 -10.89716 -10.71996 -10.55089 -10.32680 -10.06229 -10.01752 -9.77201 -8.98427 -8.58926 -8.50970 -7.70009 -6.81270 -5.76902 -3.21274 1.26246 1.89368 2.42992 2.81867 3.36574 3.42199 3.42704 4.27427 4.43762 4.49973 4.62031 4.90505 4.92566 5.06722 5.13355 5.34431 5.43790 5.44613 5.54372 5.61714 5.65920 5.70306 5.73093 5.83376 5.96521 6.04075 6.09424 6.23680 6.31415 6.56085 6.70302 6.73464 7.00825 7.06736 7.29286 7.36325 7.70110 7.77703 7.80769 8.34839 8.39049 9.18601 9.81189 10.29773 11.27568 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.004883 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.919168 B = 5732.560624 C = 6084.256313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.158 4.158 4 N -0.394 5.394 5 N -0.249 5.249 6 C 0.078 3.922 7 C -0.225 4.225 8 C 0.014 3.986 9 C -0.171 4.171 10 C 0.190 3.810 11 N -0.591 5.591 12 C 0.162 3.838 13 C -0.255 4.255 14 H 0.070 0.930 15 C 0.005 3.995 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.177 3.823 22 N -0.514 5.514 23 C 0.298 3.702 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.194 0.806 32 H 0.133 0.867 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.047 0.953 37 H -0.001 1.001 38 H 0.254 0.746 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 13.659 3.256 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.216 4.216 4 N -0.187 5.187 5 N -0.062 5.062 6 C -0.120 4.120 7 C -0.234 4.234 8 C -0.016 4.016 9 C -0.178 4.178 10 C 0.062 3.938 11 N -0.312 5.312 12 C 0.017 3.983 13 C -0.385 4.385 14 H 0.088 0.912 15 C -0.194 4.194 16 N -0.548 5.548 17 Si 0.734 3.266 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.009 3.991 22 N -0.228 5.228 23 C 0.061 3.939 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.211 0.789 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.046 14.903 4.418 15.579 hybrid contribution -0.125 -1.405 -1.721 2.225 sum 0.921 13.498 2.697 13.796 Atomic orbital electron populations 1.22141 0.94016 1.02889 1.02797 1.21150 0.94869 0.93235 0.84195 1.22131 1.01624 0.95048 1.02840 1.48198 1.43791 1.22740 1.04019 1.76486 1.20106 1.22360 0.87220 1.24934 0.95558 0.92026 0.99519 1.20525 1.07820 1.01398 0.93683 1.20569 0.91291 0.89697 1.00066 1.21664 1.04338 0.98546 0.93268 1.19843 0.91185 0.83235 0.99513 1.44158 1.57458 1.23186 1.06383 1.20842 0.95409 0.95844 0.86161 1.19179 1.06232 1.28229 0.84840 0.91223 1.25070 0.95902 1.01449 0.97004 1.70061 1.17345 1.40839 1.26524 0.86339 0.77806 0.79221 0.83210 1.20927 1.21644 1.20868 1.22504 0.90781 0.89852 0.95962 1.66677 1.13172 1.07723 1.35257 1.18902 0.94339 0.89968 0.90732 0.91426 0.91062 0.92143 0.87874 0.91448 0.91065 0.92347 0.78905 0.84882 0.92589 0.93066 0.95409 0.93439 0.98238 0.93620 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.43 37.16 0.35 -1.53 16 2 C 0.17 2.21 3.67 -67.93 -0.25 1.96 16 3 C -0.16 -1.70 9.44 37.16 0.35 -1.35 16 4 N -0.39 -6.58 3.32 -53.93 -0.18 -6.76 16 5 N -0.25 -4.05 12.21 31.85 0.39 -3.66 16 6 C 0.08 1.22 12.29 -15.18 -0.19 1.03 16 7 C -0.22 -4.11 6.38 -105.18 -0.67 -4.78 16 8 C 0.01 0.25 9.83 -39.37 -0.39 -0.14 16 9 C -0.17 -3.25 5.44 -104.85 -0.57 -3.82 16 10 C 0.19 3.66 5.84 -5.19 -0.03 3.63 16 11 N -0.59 -14.20 2.91 -182.50 -0.53 -14.73 16 12 C 0.16 3.86 9.01 59.85 0.54 4.40 16 13 C -0.26 -6.72 9.67 -15.06 -0.15 -6.87 16 14 H 0.07 1.77 7.84 -52.48 -0.41 1.35 16 15 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 16 N -0.90 -26.11 10.59 55.49 0.59 -25.52 16 17 Si 0.90 21.48 29.57 -169.99 -5.03 16.46 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.18 3.27 10.82 -17.48 -0.19 3.08 16 22 N -0.51 -9.85 10.40 -12.34 -0.13 -9.97 16 23 C 0.30 5.64 7.92 -156.12 -1.24 4.41 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.06 1.02 7.98 -51.93 -0.41 0.60 16 34 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 35 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 36 H 0.05 1.22 7.19 -51.93 -0.37 0.85 16 37 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.16 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -31.56 330.66 -8.18 -39.73 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.76 Total: -0.60 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.52 Total: 0.06 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.14 Total: -60.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.56 -8.18 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330499558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.413 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds