Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 N 1.46502 * 109.47240 * 240.00173 * 2 1 3 5 5 N 1.39834 * 125.38509 * 59.68806 * 4 2 1 6 6 C 1.30239 * 110.09176 * 179.84290 * 5 4 2 7 7 C 1.45862 * 107.65371 * 0.41075 * 6 5 4 8 8 C 1.39997 * 134.25710 * 179.69279 * 7 6 5 9 9 C 1.37019 * 118.15420 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.17819 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.46993 * 270.01607 * 10 9 8 12 12 C 1.46504 * 120.00303 * 270.00092 * 11 10 9 13 13 C 1.36932 * 119.99765 * 90.00087 * 11 10 9 14 14 H 1.08004 * 120.00267 * 22.37022 * 13 11 10 15 15 C 1.38818 * 120.00050 * 202.37673 * 13 11 10 16 16 N 1.31616 * 119.99748 * 11.32197 * 15 13 11 17 17 Si 1.86803 * 120.00091 * 191.32964 * 15 13 11 18 18 H 1.48497 * 109.47035 * 59.99534 * 17 15 13 19 19 H 1.48494 * 109.47022 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46823 * 299.99822 * 17 15 13 21 21 C 1.38816 * 119.64654 * 359.97438 * 9 8 7 22 22 N 1.31506 * 121.58718 * 0.02562 * 21 9 8 23 23 C 1.32764 * 121.47151 * 359.97438 * 22 21 9 24 24 H 1.09000 * 109.47150 * 60.00240 * 1 2 3 25 25 H 1.08998 * 109.46805 * 299.99366 * 1 2 3 26 26 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47427 * 120.00232 * 2 1 3 28 28 H 1.09001 * 109.46497 * 300.00136 * 3 2 1 29 29 H 1.08994 * 109.47093 * 60.00220 * 3 2 1 30 30 H 1.08997 * 109.47241 * 180.02562 * 3 2 1 31 31 H 1.07999 * 126.17455 * 180.16083 * 6 5 4 32 32 H 1.07995 * 120.92459 * 0.02562 * 8 7 6 33 33 H 1.08995 * 109.47519 * 30.01986 * 10 9 8 34 34 H 1.09004 * 109.46978 * 150.01966 * 10 9 8 35 35 H 1.09002 * 109.47022 * 94.20320 * 12 11 10 36 36 H 1.08999 * 109.46893 * 214.20860 * 12 11 10 37 37 H 1.09000 * 109.46842 * 334.20629 * 12 11 10 38 38 H 0.97007 * 119.99769 * 179.97438 * 16 15 13 39 39 H 1.07994 * 119.20231 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7458 -0.3158 -2.5155 6 6 2.3308 -1.1340 -3.3430 7 6 3.0382 -2.1337 -2.5506 8 6 3.8255 -3.2487 -2.8618 9 6 4.3447 -3.9824 -1.8276 10 6 5.1980 -5.1919 -2.1104 11 7 4.3460 -6.3802 -2.2010 12 6 4.0579 -7.1685 -1.0001 13 6 3.8188 -6.7542 -3.4082 14 1 4.2864 -6.4290 -4.3258 15 6 2.6832 -7.5514 -3.4526 16 7 1.9853 -7.7641 -2.3572 17 14 2.1457 -8.3222 -5.0671 18 1 3.2246 -9.2060 -5.5770 19 1 0.9137 -9.1217 -4.8479 20 1 1.8719 -7.2521 -6.0596 21 6 4.0804 -3.6057 -0.5179 22 7 3.3391 -2.5558 -0.2394 23 6 2.8094 -1.8070 -1.1992 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 2.2950 -1.0839 -4.4212 32 1 4.0183 -3.5229 -3.8884 33 1 5.7267 -5.0512 -3.0531 34 1 5.9203 -5.3233 -1.3047 35 1 3.1182 -6.8325 -0.5618 36 1 3.9780 -8.2221 -1.2677 37 1 4.8634 -7.0371 -0.2776 38 1 1.1915 -8.3209 -2.3883 39 1 4.4936 -4.1889 0.2917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330499558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 104.018466 kcal Electronic energy + Delta-G solvation = -21017.893189 eV Core-core repulsion = 17962.108318 eV Total energy + Delta-G solvation = -3055.784871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.45365 -39.46083 -37.28674 -36.46431 -34.19919 -32.78086 -31.24134 -30.68744 -28.24038 -27.94618 -27.15232 -24.90309 -24.03583 -23.59347 -22.02222 -20.67576 -18.83120 -18.64192 -17.63974 -16.97223 -16.65306 -16.46400 -15.67416 -15.46161 -15.43063 -15.04649 -14.60312 -14.40288 -14.23351 -13.90788 -13.43740 -13.25823 -13.10363 -13.05066 -12.98266 -12.74706 -12.55820 -12.43781 -12.41037 -12.10855 -11.96827 -11.87027 -11.69938 -11.20787 -10.61673 -10.39594 -9.88436 -9.09517 -8.73752 -7.79244 -5.25576 -0.10565 0.45498 1.21831 1.48863 1.50755 1.52877 1.56542 2.53640 2.86800 3.24812 3.34857 3.38609 3.77488 3.85042 3.92443 3.95607 4.04644 4.14021 4.20388 4.44525 4.47715 4.63127 4.66890 4.74149 4.76427 4.86139 4.92558 4.94213 5.07858 5.12755 5.17125 5.39473 5.43197 5.54977 5.67688 5.73196 5.79258 5.98203 6.36167 6.50240 6.98832 7.18985 7.91174 8.34153 9.23917 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.004883 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.919168 B = 5732.560624 C = 6084.256313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 C -0.148 4.148 4 N -0.397 5.397 5 N -0.255 5.255 6 C 0.084 3.916 7 C -0.245 4.245 8 C 0.011 3.989 9 C -0.184 4.184 10 C 0.192 3.808 11 N -0.607 5.607 12 C 0.176 3.824 13 C -0.252 4.252 14 H 0.079 0.921 15 C -0.053 4.053 16 N -0.940 5.940 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.302 1.302 20 H -0.275 1.275 21 C 0.171 3.829 22 N -0.527 5.527 23 C 0.278 3.722 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.233 0.767 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.078 0.922 35 H -0.005 1.005 36 H 0.018 0.982 37 H 0.038 0.962 38 H 0.244 0.756 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 15.297 2.732 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 C -0.205 4.205 4 N -0.190 5.190 5 N -0.067 5.067 6 C -0.114 4.114 7 C -0.255 4.255 8 C -0.019 4.019 9 C -0.191 4.191 10 C 0.065 3.935 11 N -0.329 5.329 12 C 0.032 3.968 13 C -0.383 4.383 14 H 0.097 0.903 15 C -0.248 4.248 16 N -0.587 5.587 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.229 1.229 20 H -0.200 1.200 21 C 0.003 3.997 22 N -0.242 5.242 23 C 0.039 3.961 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.249 0.751 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.013 0.987 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.641 16.600 3.889 17.128 hybrid contribution -0.234 -1.768 -1.513 2.339 sum 1.407 14.832 2.377 15.087 Atomic orbital electron populations 1.22096 0.92827 1.01834 1.04267 1.21500 0.95844 0.94352 0.82914 1.22062 1.00911 0.93376 1.04197 1.48605 1.43170 1.22226 1.04975 1.76475 1.20347 1.22655 0.87249 1.25556 0.94161 0.90557 1.01114 1.20848 1.08392 1.02048 0.94189 1.20804 0.90805 0.89670 1.00604 1.21615 1.04646 0.99131 0.93715 1.19974 0.90650 0.81582 1.01252 1.44330 1.57539 1.25366 1.05636 1.20563 0.95308 0.94085 0.86890 1.19556 1.05514 1.27084 0.86127 0.90331 1.25763 0.96587 1.02833 0.99611 1.70250 1.17838 1.42277 1.28364 0.85410 0.76921 0.78436 0.80134 1.20143 1.22882 1.20046 1.22841 0.90547 0.89810 0.96502 1.66710 1.13713 1.08159 1.35647 1.19297 0.94769 0.90741 0.91244 0.91707 0.87798 0.94376 0.88417 0.91758 0.87961 0.93319 0.75123 0.83789 0.91395 0.90353 0.98665 0.96338 0.94388 0.94705 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.43 71.98 0.68 -2.67 16 2 C 0.15 3.90 3.67 44.99 0.17 4.07 16 3 C -0.15 -2.88 9.44 71.98 0.68 -2.20 16 4 N -0.40 -12.90 3.32 -324.54 -1.08 -13.97 16 5 N -0.26 -7.92 12.21 -53.14 -0.65 -8.57 16 6 C 0.08 2.47 12.29 86.90 1.07 3.53 16 7 C -0.24 -8.71 6.38 -20.23 -0.13 -8.84 16 8 C 0.01 0.38 9.83 22.41 0.22 0.60 16 9 C -0.18 -6.78 5.44 -20.01 -0.11 -6.89 16 10 C 0.19 7.00 5.84 85.63 0.50 7.50 16 11 N -0.61 -28.63 2.91 -731.30 -2.13 -30.76 16 12 C 0.18 8.42 9.01 127.77 1.15 9.57 16 13 C -0.25 -13.13 9.67 84.04 0.81 -12.32 16 14 H 0.08 3.86 7.84 -2.91 -0.02 3.84 16 15 C -0.05 -2.92 5.13 84.86 0.44 -2.48 16 16 N -0.94 -55.69 10.59 21.65 0.23 -55.47 16 17 Si 0.96 44.37 29.57 68.60 2.03 46.40 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.17 6.18 10.82 84.88 0.92 7.10 16 22 N -0.53 -20.02 10.40 -192.96 -2.01 -22.03 16 23 C 0.28 10.36 7.92 134.12 1.06 11.42 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 2.55 8.05 -2.39 -0.02 2.53 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 33 H 0.07 2.31 7.98 -2.39 -0.02 2.29 16 34 H 0.08 2.42 7.81 -2.38 -0.02 2.40 16 35 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 36 H 0.02 0.95 7.19 -2.39 -0.02 0.93 16 37 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 38 H 0.24 14.28 8.31 -92.70 -0.77 13.51 16 39 H 0.17 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -68.59 330.66 4.88 -63.71 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.03 Total: 12.30 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 7.45 Total: 8.39 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.63 Total: -130.79 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.59 4.88 -63.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330499558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.728 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds