Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48498 * 109.47070 * 239.99944 * 3 2 1 5 5 H 1.48504 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47450 * 119.99698 * 3 2 1 7 7 C 1.37878 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99826 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46874 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47251 * 179.97438 * 10 9 7 12 12 C 1.46892 * 111.00052 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47315 * 325.00279 * 12 11 10 14 14 C 1.53003 * 109.47342 * 85.00301 * 12 11 10 15 15 C 1.52992 * 109.47244 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47384 * 300.00043 * 15 14 12 17 17 C 1.52995 * 109.47076 * 59.99981 * 16 15 14 18 18 H 1.09006 * 109.47128 * 60.00246 * 17 16 15 19 19 C 1.50707 * 109.46966 * 180.02562 * 17 16 15 20 20 C 1.38676 * 120.41424 * 240.01806 * 19 17 16 21 21 C 1.38629 * 118.41631 * 179.71101 * 20 19 17 22 22 C 1.38230 * 119.16240 * 0.55670 * 21 20 19 23 23 N 1.31858 * 120.76104 * 359.43175 * 22 21 20 24 24 C 1.31887 * 121.72468 * 0.27879 * 23 22 21 25 25 C 1.52997 * 109.47418 * 299.99909 * 17 16 15 26 26 H 0.97002 * 120.00410 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47506 * 60.00111 * 9 7 2 28 28 H 1.09002 * 109.47162 * 299.99516 * 9 7 2 29 29 H 1.09000 * 109.47394 * 60.00348 * 10 9 7 30 30 H 1.09000 * 109.47483 * 299.99989 * 10 9 7 31 31 H 1.00899 * 110.99426 * 56.04690 * 11 10 9 32 32 H 1.09006 * 109.47024 * 59.99568 * 14 12 11 33 33 H 1.08998 * 109.46984 * 300.00469 * 14 12 11 34 34 H 1.09003 * 109.47184 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47074 * 60.00185 * 15 14 12 36 36 H 1.08997 * 109.47131 * 300.00107 * 16 15 14 37 37 H 1.09004 * 109.47305 * 179.97438 * 16 15 14 38 38 H 1.07995 * 120.79706 * 359.96334 * 20 19 17 39 39 H 1.07999 * 120.42389 * 180.28670 * 21 20 19 40 40 H 1.08002 * 119.62315 * 179.71361 * 22 21 20 41 41 H 1.07999 * 119.61429 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.47572 * 179.97438 * 25 17 16 43 43 H 1.09006 * 109.47246 * 300.00264 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4352 -6.0758 0.0018 13 1 3.3181 -5.8287 -0.5877 14 6 2.8538 -6.3924 1.4390 15 6 3.8161 -7.5818 1.4397 16 6 3.1207 -8.8010 0.8308 17 6 2.7021 -8.4844 -0.6064 18 1 3.5851 -8.2377 -1.1960 19 6 2.0165 -9.6852 -1.2059 20 6 2.5326 -10.2950 -2.3394 21 6 1.8720 -11.4005 -2.8525 22 6 0.7225 -11.8479 -2.2285 23 7 0.2605 -11.2429 -1.1519 24 6 0.8661 -10.1924 -0.6329 25 6 1.7397 -7.2951 -0.6071 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 0.8741 -4.9846 -0.7800 32 1 1.9708 -6.6395 2.0285 33 1 3.3488 -5.5237 1.8729 34 1 4.1140 -7.8076 2.4636 35 1 4.6991 -7.3350 0.8501 36 1 2.2377 -9.0477 1.4204 37 1 3.8065 -9.6482 0.8309 38 1 3.4300 -9.9202 -2.8089 39 1 2.2481 -11.9032 -3.7313 40 1 0.1993 -12.7057 -2.6247 41 1 0.4580 -9.7234 0.2502 42 1 1.4419 -7.0693 -1.6311 43 1 0.8567 -7.5418 -0.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337261605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = 1.795988 kcal Electronic energy + Delta-G solvation = -20504.017305 eV Core-core repulsion = 17547.340078 eV Total energy + Delta-G solvation = -2956.677227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.65526 -38.67863 -35.41193 -33.32587 -32.69401 -32.07946 -30.43437 -29.09629 -27.49756 -24.35350 -23.91383 -23.62879 -22.16397 -21.00430 -20.33801 -19.57668 -17.36886 -16.43310 -16.35527 -15.78025 -15.02903 -14.79217 -14.55418 -14.34079 -14.15373 -14.04499 -13.80262 -13.29014 -13.13279 -12.87265 -12.54864 -12.23598 -11.99832 -11.81693 -11.40447 -11.17308 -11.07454 -10.92686 -10.69774 -10.59219 -10.42917 -10.13177 -9.98399 -9.90075 -9.60933 -9.35713 -9.17262 -9.06196 -8.34209 -7.79480 -5.98672 -4.01378 0.88656 1.05791 3.33694 3.38083 3.40340 3.58498 4.15395 4.38540 4.46011 4.48627 4.62658 4.70834 4.77424 4.85089 4.97767 5.08354 5.18796 5.36152 5.37109 5.39250 5.43664 5.46843 5.51408 5.61121 5.66315 5.83995 5.86657 5.96605 6.06754 6.08612 6.19533 6.24561 6.34439 6.39268 6.42654 6.48892 6.58068 7.01247 7.52625 7.74701 7.76600 7.84871 7.98989 8.10555 8.44939 9.05835 9.62255 11.12732 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031294 B = 0.002960 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.528771 B = 9458.016979 C = 9850.339766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.688 5.688 12 C 0.089 3.911 13 H 0.037 0.963 14 C -0.108 4.108 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.041 4.041 18 H 0.079 0.921 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.172 4.172 22 C 0.087 3.913 23 N -0.484 5.484 24 C 0.105 3.895 25 C -0.111 4.111 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.013 0.987 31 H 0.336 0.664 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -23.415 -3.025 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.319 5.319 12 C -0.022 4.022 13 H 0.055 0.945 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.146 4.146 17 C -0.061 4.061 18 H 0.097 0.903 19 C -0.123 4.123 20 C -0.102 4.102 21 C -0.192 4.192 22 C -0.070 4.070 23 N -0.192 5.192 24 C -0.052 4.052 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.079 0.921 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.218 -23.609 -1.946 24.257 hybrid contribution 1.579 1.321 -1.474 2.532 sum 6.797 -22.289 -3.420 23.552 Atomic orbital electron populations 1.69960 1.06029 1.26696 1.50569 1.25002 0.94840 0.99192 0.95316 0.86654 0.79573 0.83154 0.78580 1.20317 1.21259 1.20213 1.21146 0.92920 0.91076 1.50980 0.92862 1.19060 0.94025 0.90441 0.97660 1.22186 0.96903 0.88535 0.98471 1.60602 1.19676 1.01932 1.49715 1.21462 0.94395 0.90460 0.95846 0.94486 1.21538 0.99088 0.97220 0.96769 1.21542 0.98501 0.94968 1.00615 1.21603 1.00653 0.97952 0.94440 1.20125 0.97893 0.91438 0.96634 0.90298 1.20953 0.96996 0.98078 0.96264 1.21550 0.99315 0.94593 0.94729 1.22135 0.97416 0.98001 1.01643 1.22754 0.93738 0.98681 0.91785 1.67712 1.32000 1.08455 1.11001 1.22679 0.91753 0.91968 0.98820 1.21791 0.98419 0.93697 1.01000 0.92931 0.96903 0.95664 0.92385 0.96833 0.84626 0.91310 0.91779 0.91788 0.92191 0.91518 0.92175 0.84973 0.84946 0.82992 0.82765 0.92070 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 11 N -0.69 -12.11 6.31 -106.72 -0.67 -12.78 16 12 C 0.09 1.23 2.50 -67.71 -0.17 1.06 16 13 H 0.04 0.54 7.80 -51.93 -0.41 0.13 16 14 C -0.11 -1.39 5.43 -26.73 -0.15 -1.54 16 15 C -0.12 -1.19 5.92 -26.74 -0.16 -1.34 16 16 C -0.11 -0.99 5.02 -26.73 -0.13 -1.12 16 17 C -0.04 -0.39 2.38 -91.77 -0.22 -0.61 16 18 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 19 C -0.12 -1.17 4.79 -104.48 -0.50 -1.67 16 20 C -0.08 -0.66 9.81 -39.28 -0.39 -1.04 16 21 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 22 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16 23 N -0.48 -5.54 10.36 -13.25 -0.14 -5.68 16 24 C 0.10 1.12 9.90 -17.55 -0.17 0.94 16 25 C -0.11 -1.27 4.29 -26.73 -0.11 -1.39 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.23 7.43 -51.93 -0.39 0.85 16 30 H 0.01 0.28 8.06 -51.93 -0.42 -0.13 16 31 H 0.34 5.77 8.35 -39.29 -0.33 5.44 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.92 7.45 -51.93 -0.39 0.54 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.60 7.41 -51.93 -0.38 0.22 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.13 0.90 8.00 -52.49 -0.42 0.48 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.16 1.50 7.13 -52.49 -0.37 1.12 16 42 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.07 0.87 7.41 -51.93 -0.38 0.48 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -31.29 343.47 -10.34 -41.62 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.25 Total: 0.95 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.17 Total: -19.65 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.07 Total: -44.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.29 -10.34 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337261605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.419 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds