Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.52993 * 109.47087 * 239.99511 * 2 1 3 5 5 C 1.50703 * 109.47235 * 60.00552 * 4 2 1 6 6 H 1.08000 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00249 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99879 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47153 * 89.99334 * 9 7 5 11 11 H 1.48499 * 109.46910 * 209.99540 * 9 7 5 12 12 H 1.48496 * 109.46601 * 329.99510 * 9 7 5 13 13 C 1.52993 * 109.46794 * 119.99614 * 2 1 3 14 14 N 1.46510 * 109.47343 * 299.99964 * 13 2 1 15 15 C 1.31195 * 119.99657 * 114.62919 * 14 13 2 16 16 N 1.38359 * 121.43674 * 354.05141 * 15 14 13 17 17 H 0.97000 * 120.20272 * 359.75554 * 16 15 14 18 18 C 1.35990 * 119.59731 * 179.72708 * 16 15 14 19 19 N 1.29882 * 123.12199 * 0.02562 * 18 16 15 20 20 C 1.34526 * 122.45903 * 359.97438 * 19 18 16 21 21 N 1.36492 * 133.61443 * 180.02562 * 20 19 18 22 22 H 0.97002 * 124.95231 * 359.97162 * 21 20 19 23 23 C 1.36912 * 110.09161 * 180.02562 * 21 20 19 24 24 C 1.34641 * 109.52601 * 359.90996 * 23 21 20 25 25 C 1.39736 * 119.18735 * 359.97438 * 20 19 18 26 26 H 1.08998 * 109.47266 * 300.00404 * 1 2 3 27 27 H 1.09007 * 109.47144 * 60.00134 * 1 2 3 28 28 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47310 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47030 * 299.99935 * 3 2 1 31 31 H 1.08998 * 109.47409 * 59.99683 * 3 2 1 32 32 H 1.09004 * 109.47017 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47483 * 300.00329 * 4 2 1 34 34 H 0.97000 * 120.00281 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47184 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.47649 * 60.00060 * 13 2 1 37 37 H 1.08007 * 118.44257 * 179.97438 * 18 16 15 38 38 H 1.07995 * 125.23669 * 179.97438 * 23 21 20 39 39 H 1.07996 * 126.68727 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2252 1.4394 -5.6620 11 1 1.0820 -0.5817 -6.3611 12 1 -0.0608 1.0353 -4.9611 13 6 2.0399 -0.7211 1.2493 14 7 1.5515 -0.0304 2.4455 15 6 0.7128 -0.6332 3.2544 16 7 0.1759 -1.8705 2.9461 17 1 0.4132 -2.3122 2.1158 18 6 -0.6859 -2.4640 3.8146 19 7 -1.0423 -1.9243 4.9410 20 6 -0.5843 -0.7254 5.3440 21 7 -0.7987 0.0399 6.4537 22 1 -1.3792 -0.2022 7.1921 23 6 -0.0758 1.1998 6.3719 24 6 0.6206 1.2157 5.2197 25 6 0.3091 -0.0275 4.5271 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2493 33 1 1.6766 -1.7489 -1.2491 34 1 2.8608 -1.8832 -4.7334 35 1 3.1299 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2494 37 1 -1.0942 -3.4297 3.5551 38 1 -0.0651 1.9811 7.1173 39 1 1.2810 1.9980 4.8757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340893965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = 62.859809 kcal Electronic energy + Delta-G solvation = -20859.781013 eV Core-core repulsion = 17802.211368 eV Total energy + Delta-G solvation = -3057.569644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38944 -40.09819 -38.64632 -36.04937 -34.42900 -33.07939 -31.81092 -29.78843 -28.88924 -27.97898 -27.34555 -25.15218 -24.40732 -23.15101 -21.34950 -19.93179 -19.56776 -19.06906 -18.35637 -17.71453 -16.68487 -16.44327 -16.29505 -15.55460 -15.42753 -14.96425 -14.63369 -14.38264 -14.27731 -14.03609 -13.95049 -13.65335 -13.38747 -12.93628 -12.75046 -12.70040 -12.59054 -12.33102 -12.14997 -11.94259 -11.50558 -11.07509 -10.95536 -10.76739 -10.51322 -10.44323 -10.16370 -9.51815 -8.20150 -8.11740 -6.21831 0.21348 0.93016 1.40117 1.40837 1.51263 1.87029 1.92247 2.02308 2.43120 2.80670 3.18785 3.28866 3.71733 3.95542 4.12679 4.19370 4.23661 4.34605 4.38995 4.57249 4.60592 4.84239 4.86155 4.94949 5.00748 5.08508 5.11266 5.16939 5.41885 5.44809 5.48141 5.50640 5.61105 5.67270 5.81418 5.89620 5.91410 6.21116 6.34121 6.53851 6.91456 7.11267 7.25712 7.45281 8.97154 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.003861 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.567106 B = 7249.670823 C = 7563.452732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.051 4.051 3 C -0.106 4.106 4 C 0.043 3.957 5 C -0.517 4.517 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.073 3.927 14 N -0.591 5.591 15 C 0.420 3.580 16 N -0.672 5.672 17 H 0.424 0.576 18 C 0.400 3.600 19 N -0.563 5.563 20 C 0.254 3.746 21 N -0.534 5.534 22 H 0.433 0.567 23 C 0.027 3.973 24 C -0.165 4.165 25 C -0.228 4.228 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.053 0.947 32 H -0.014 1.014 33 H -0.006 1.006 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.250 0.750 38 H 0.221 0.779 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 0.113 21.717 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.051 4.051 3 C -0.164 4.164 4 C 0.006 3.994 5 C -0.555 4.555 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.189 1.189 13 C -0.058 4.058 14 N -0.317 5.317 15 C 0.150 3.850 16 N -0.305 5.305 17 H 0.265 0.735 18 C 0.110 3.890 19 N -0.288 5.288 20 C 0.030 3.970 21 N -0.136 5.136 22 H 0.273 0.727 23 C -0.101 4.101 24 C -0.190 4.190 25 C -0.241 4.241 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.004 0.996 33 H 0.012 0.988 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.238 0.762 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.796 0.633 22.239 23.924 hybrid contribution 0.330 -0.486 -2.068 2.149 sum -8.466 0.147 20.172 21.877 Atomic orbital electron populations 1.21542 0.94940 1.00222 0.99939 1.20524 0.95444 0.95977 0.93187 1.21474 0.99188 0.95764 0.99940 1.18989 0.94148 0.94234 0.92067 1.21571 1.30454 1.11898 0.91566 0.92138 1.25856 0.95632 0.95847 1.02330 1.70090 1.38643 1.24726 1.24104 0.85607 0.79011 0.78318 0.79103 1.20240 1.20881 1.18940 1.21835 0.99021 0.94847 0.90054 1.73117 1.19289 1.31197 1.08055 1.20734 0.90211 0.81639 0.92417 1.44424 1.43014 1.19391 1.23672 0.73505 1.25287 0.84109 0.97099 0.82529 1.66820 1.32120 1.12128 1.17719 1.18071 0.97473 0.91440 0.90057 1.41352 1.39583 1.15610 1.17032 0.72702 1.22408 0.96912 0.90198 1.00540 1.21631 1.04824 0.97077 0.95472 1.20053 1.08610 1.00839 0.94572 0.94049 0.93594 0.93795 0.94830 0.94055 0.92779 0.99613 0.98810 0.93052 0.92122 0.94733 0.73423 0.76230 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.06 71.98 0.58 -3.77 16 2 C -0.05 -2.17 0.60 -52.19 -0.03 -2.21 16 3 C -0.11 -4.56 8.06 71.98 0.58 -3.98 16 4 C 0.04 2.27 4.04 29.85 0.12 2.39 16 5 C -0.52 -29.08 7.65 25.60 0.20 -28.89 16 6 H 0.06 3.33 5.68 -2.91 -0.02 3.31 16 7 C 0.00 0.02 5.46 84.65 0.46 0.49 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 9 Si 0.95 44.80 29.54 68.60 2.03 46.82 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.07 2.75 5.19 86.38 0.45 3.20 16 14 N -0.59 -21.22 9.11 -339.28 -3.09 -24.31 16 15 C 0.42 13.02 7.50 135.61 1.02 14.04 16 16 N -0.67 -15.76 5.30 -191.30 -1.01 -16.77 16 17 H 0.42 9.32 6.46 -92.71 -0.60 8.72 16 18 C 0.40 7.05 12.30 180.14 2.22 9.27 16 19 N -0.56 -12.28 10.34 -196.21 -2.03 -14.31 16 20 C 0.25 6.12 8.46 133.40 1.13 7.25 16 21 N -0.53 -8.88 6.01 -192.28 -1.16 -10.04 16 22 H 0.43 4.27 8.96 -92.71 -0.83 3.44 16 23 C 0.03 0.42 11.86 83.08 0.99 1.41 16 24 C -0.16 -3.97 11.09 23.37 0.26 -3.71 16 25 C -0.23 -6.54 6.60 -18.81 -0.12 -6.66 16 26 H 0.04 1.57 7.45 -2.39 -0.02 1.55 16 27 H 0.04 1.97 6.62 -2.38 -0.02 1.95 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.84 6.62 -2.38 -0.02 1.82 16 31 H 0.05 2.17 7.60 -2.39 -0.02 2.16 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 1.18 5.62 -2.39 -0.01 1.16 16 37 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -75.65 319.99 2.52 -73.13 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -0.34 Total: 13.20 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 7.84 Total: -11.17 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.00 Total: -121.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.65 2.52 -73.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340893965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.992 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds