Wall clock time and date at job start Mon Mar 30 2020 01:41:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.47065 * 2 1
4 4 C 1.52993 * 109.47087 * 239.99511 * 2 1 3
5 5 C 1.50703 * 109.47235 * 60.00552 * 4 2 1
6 6 H 1.08000 * 119.99991 * 359.97438 * 5 4 2
7 7 C 1.37874 * 120.00249 * 180.02562 * 5 4 2
8 8 N 1.31516 * 119.99879 * 359.97438 * 7 5 4
9 9 Si 1.86805 * 120.00221 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47153 * 89.99334 * 9 7 5
11 11 H 1.48499 * 109.46910 * 209.99540 * 9 7 5
12 12 H 1.48496 * 109.46601 * 329.99510 * 9 7 5
13 13 C 1.52993 * 109.46794 * 119.99614 * 2 1 3
14 14 N 1.46510 * 109.47343 * 299.99964 * 13 2 1
15 15 C 1.31195 * 119.99657 * 114.62919 * 14 13 2
16 16 N 1.38359 * 121.43674 * 354.05141 * 15 14 13
17 17 H 0.97000 * 120.20272 * 359.75554 * 16 15 14
18 18 C 1.35990 * 119.59731 * 179.72708 * 16 15 14
19 19 N 1.29882 * 123.12199 * 0.02562 * 18 16 15
20 20 C 1.34526 * 122.45903 * 359.97438 * 19 18 16
21 21 N 1.36492 * 133.61443 * 180.02562 * 20 19 18
22 22 H 0.97002 * 124.95231 * 359.97162 * 21 20 19
23 23 C 1.36912 * 110.09161 * 180.02562 * 21 20 19
24 24 C 1.34641 * 109.52601 * 359.90996 * 23 21 20
25 25 C 1.39736 * 119.18735 * 359.97438 * 20 19 18
26 26 H 1.08998 * 109.47266 * 300.00404 * 1 2 3
27 27 H 1.09007 * 109.47144 * 60.00134 * 1 2 3
28 28 H 1.08996 * 109.47228 * 180.02562 * 1 2 3
29 29 H 1.08995 * 109.47310 * 180.02562 * 3 2 1
30 30 H 1.09007 * 109.47030 * 299.99935 * 3 2 1
31 31 H 1.08998 * 109.47409 * 59.99683 * 3 2 1
32 32 H 1.09004 * 109.47017 * 179.97438 * 4 2 1
33 33 H 1.08996 * 109.47483 * 300.00329 * 4 2 1
34 34 H 0.97000 * 120.00281 * 180.02562 * 8 7 5
35 35 H 1.08999 * 109.47184 * 180.02562 * 13 2 1
36 36 H 1.08997 * 109.47649 * 60.00060 * 13 2 1
37 37 H 1.08007 * 118.44257 * 179.97438 * 18 16 15
38 38 H 1.07995 * 125.23669 * 179.97438 * 23 21 20
39 39 H 1.07996 * 126.68727 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.5378 -0.0109 -2.4797
6 1 0.9166 0.8670 -2.3807
7 6 1.8704 -0.4824 -3.7319
8 7 2.6264 -1.5517 -3.8525
9 14 1.2473 0.3978 -5.2572
10 1 2.2252 1.4394 -5.6620
11 1 1.0820 -0.5817 -6.3611
12 1 -0.0608 1.0353 -4.9611
13 6 2.0399 -0.7211 1.2493
14 7 1.5515 -0.0304 2.4455
15 6 0.7128 -0.6332 3.2544
16 7 0.1759 -1.8705 2.9461
17 1 0.4132 -2.3122 2.1158
18 6 -0.6859 -2.4640 3.8146
19 7 -1.0423 -1.9243 4.9410
20 6 -0.5843 -0.7254 5.3440
21 7 -0.7987 0.0399 6.4537
22 1 -1.3792 -0.2022 7.1921
23 6 -0.0758 1.1998 6.3719
24 6 0.6206 1.2157 5.2197
25 6 0.3091 -0.0275 4.5271
26 1 -0.3634 0.5139 0.8899
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 3.1300 1.4425 -0.0005
30 1 1.6766 1.9563 -0.8900
31 1 1.6766 1.9564 0.8899
32 1 3.1300 -0.7209 -1.2493
33 1 1.6766 -1.7489 -1.2491
34 1 2.8608 -1.8832 -4.7334
35 1 3.1299 -0.7208 1.2496
36 1 1.6766 -1.7488 1.2494
37 1 -1.0942 -3.4297 3.5551
38 1 -0.0651 1.9811 7.1173
39 1 1.2810 1.9980 4.8757
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000340893965.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:41:25
Heat of formation + Delta-G solvation = 62.859809 kcal
Electronic energy + Delta-G solvation = -20859.781013 eV
Core-core repulsion = 17802.211368 eV
Total energy + Delta-G solvation = -3057.569644 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 274.149 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.38944 -40.09819 -38.64632 -36.04937 -34.42900 -33.07939 -31.81092 -29.78843
-28.88924 -27.97898 -27.34555 -25.15218 -24.40732 -23.15101 -21.34950 -19.93179
-19.56776 -19.06906 -18.35637 -17.71453 -16.68487 -16.44327 -16.29505 -15.55460
-15.42753 -14.96425 -14.63369 -14.38264 -14.27731 -14.03609 -13.95049 -13.65335
-13.38747 -12.93628 -12.75046 -12.70040 -12.59054 -12.33102 -12.14997 -11.94259
-11.50558 -11.07509 -10.95536 -10.76739 -10.51322 -10.44323 -10.16370 -9.51815
-8.20150 -8.11740 -6.21831 0.21348 0.93016 1.40117 1.40837 1.51263
1.87029 1.92247 2.02308 2.43120 2.80670 3.18785 3.28866 3.71733
3.95542 4.12679 4.19370 4.23661 4.34605 4.38995 4.57249 4.60592
4.84239 4.86155 4.94949 5.00748 5.08508 5.11266 5.16939 5.41885
5.44809 5.48141 5.50640 5.61105 5.67270 5.81418 5.89620 5.91410
6.21116 6.34121 6.53851 6.91456 7.11267 7.25712 7.45281 8.97154
Molecular weight = 274.15amu
Principal moments of inertia in cm(-1)
A = 0.034707 B = 0.003861 C = 0.003701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 806.567106 B = 7249.670823 C = 7563.452732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.051 4.051
3 C -0.106 4.106
4 C 0.043 3.957
5 C -0.517 4.517
6 H 0.061 0.939
7 C 0.000 4.000
8 N -0.934 5.934
9 Si 0.954 3.046
10 H -0.277 1.277
11 H -0.283 1.283
12 H -0.265 1.265
13 C 0.073 3.927
14 N -0.591 5.591
15 C 0.420 3.580
16 N -0.672 5.672
17 H 0.424 0.576
18 C 0.400 3.600
19 N -0.563 5.563
20 C 0.254 3.746
21 N -0.534 5.534
22 H 0.433 0.567
23 C 0.027 3.973
24 C -0.165 4.165
25 C -0.228 4.228
26 H 0.040 0.960
27 H 0.045 0.955
28 H 0.043 0.957
29 H 0.033 0.967
30 H 0.040 0.960
31 H 0.053 0.947
32 H -0.014 1.014
33 H -0.006 1.006
34 H 0.261 0.739
35 H 0.060 0.940
36 H 0.035 0.965
37 H 0.250 0.750
38 H 0.221 0.779
39 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.791 0.113 21.717 23.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.051 4.051
3 C -0.164 4.164
4 C 0.006 3.994
5 C -0.555 4.555
6 H 0.079 0.921
7 C -0.197 4.197
8 N -0.576 5.576
9 Si 0.780 3.220
10 H -0.202 1.202
11 H -0.209 1.209
12 H -0.189 1.189
13 C -0.058 4.058
14 N -0.317 5.317
15 C 0.150 3.850
16 N -0.305 5.305
17 H 0.265 0.735
18 C 0.110 3.890
19 N -0.288 5.288
20 C 0.030 3.970
21 N -0.136 5.136
22 H 0.273 0.727
23 C -0.101 4.101
24 C -0.190 4.190
25 C -0.241 4.241
26 H 0.060 0.940
27 H 0.064 0.936
28 H 0.062 0.938
29 H 0.052 0.948
30 H 0.059 0.941
31 H 0.072 0.928
32 H 0.004 0.996
33 H 0.012 0.988
34 H 0.069 0.931
35 H 0.079 0.921
36 H 0.053 0.947
37 H 0.266 0.734
38 H 0.238 0.762
39 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -8.796 0.633 22.239 23.924
hybrid contribution 0.330 -0.486 -2.068 2.149
sum -8.466 0.147 20.172 21.877
Atomic orbital electron populations
1.21542 0.94940 1.00222 0.99939 1.20524 0.95444 0.95977 0.93187
1.21474 0.99188 0.95764 0.99940 1.18989 0.94148 0.94234 0.92067
1.21571 1.30454 1.11898 0.91566 0.92138 1.25856 0.95632 0.95847
1.02330 1.70090 1.38643 1.24726 1.24104 0.85607 0.79011 0.78318
0.79103 1.20240 1.20881 1.18940 1.21835 0.99021 0.94847 0.90054
1.73117 1.19289 1.31197 1.08055 1.20734 0.90211 0.81639 0.92417
1.44424 1.43014 1.19391 1.23672 0.73505 1.25287 0.84109 0.97099
0.82529 1.66820 1.32120 1.12128 1.17719 1.18071 0.97473 0.91440
0.90057 1.41352 1.39583 1.15610 1.17032 0.72702 1.22408 0.96912
0.90198 1.00540 1.21631 1.04824 0.97077 0.95472 1.20053 1.08610
1.00839 0.94572 0.94049 0.93594 0.93795 0.94830 0.94055 0.92779
0.99613 0.98810 0.93052 0.92122 0.94733 0.73423 0.76230 0.83685
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.35 8.06 71.98 0.58 -3.77 16
2 C -0.05 -2.17 0.60 -52.19 -0.03 -2.21 16
3 C -0.11 -4.56 8.06 71.98 0.58 -3.98 16
4 C 0.04 2.27 4.04 29.85 0.12 2.39 16
5 C -0.52 -29.08 7.65 25.60 0.20 -28.89 16
6 H 0.06 3.33 5.68 -2.91 -0.02 3.31 16
7 C 0.00 0.02 5.46 84.65 0.46 0.49 16
8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16
9 Si 0.95 44.80 29.54 68.60 2.03 46.82 16
10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
13 C 0.07 2.75 5.19 86.38 0.45 3.20 16
14 N -0.59 -21.22 9.11 -339.28 -3.09 -24.31 16
15 C 0.42 13.02 7.50 135.61 1.02 14.04 16
16 N -0.67 -15.76 5.30 -191.30 -1.01 -16.77 16
17 H 0.42 9.32 6.46 -92.71 -0.60 8.72 16
18 C 0.40 7.05 12.30 180.14 2.22 9.27 16
19 N -0.56 -12.28 10.34 -196.21 -2.03 -14.31 16
20 C 0.25 6.12 8.46 133.40 1.13 7.25 16
21 N -0.53 -8.88 6.01 -192.28 -1.16 -10.04 16
22 H 0.43 4.27 8.96 -92.71 -0.83 3.44 16
23 C 0.03 0.42 11.86 83.08 0.99 1.41 16
24 C -0.16 -3.97 11.09 23.37 0.26 -3.71 16
25 C -0.23 -6.54 6.60 -18.81 -0.12 -6.66 16
26 H 0.04 1.57 7.45 -2.39 -0.02 1.55 16
27 H 0.04 1.97 6.62 -2.38 -0.02 1.95 16
28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16
30 H 0.04 1.84 6.62 -2.38 -0.02 1.82 16
31 H 0.05 2.17 7.60 -2.39 -0.02 2.16 16
32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16
34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16
35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16
36 H 0.03 1.18 5.62 -2.39 -0.01 1.16 16
37 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16
38 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16
39 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16
Total: -1.00 -75.65 319.99 2.52 -73.13
By element:
Atomic # 1 Polarization: 13.55 SS G_CDS: -0.34 Total: 13.20 kcal
Atomic # 6 Polarization: -19.01 SS G_CDS: 7.84 Total: -11.17 kcal
Atomic # 7 Polarization: -114.98 SS G_CDS: -7.00 Total: -121.99 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -75.65 2.52 -73.13 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340893965.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.992 kcal
(2) G-P(sol) polarization free energy of solvation -75.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds