Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.47206 * 150.00012 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00063 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00030 * 189.99975 * 10 9 7 12 12 C 1.52998 * 109.47304 * 76.25235 * 11 10 9 13 13 C 1.52991 * 109.47725 * 181.72903 * 12 11 10 14 14 C 1.50700 * 109.47485 * 180.02562 * 13 12 11 15 15 C 1.38661 * 120.78427 * 269.71619 * 14 13 12 16 16 C 1.38206 * 119.15518 * 179.79475 * 15 14 13 17 17 N 1.31867 * 120.76435 * 0.49487 * 16 15 14 18 18 C 1.31863 * 121.73244 * 359.73584 * 17 16 15 19 19 C 1.38210 * 120.76058 * 0.02562 * 18 17 16 20 20 C 1.46904 * 110.99850 * 66.05117 * 10 9 7 21 21 C 1.52999 * 109.47009 * 200.52811 * 20 10 9 22 22 C 1.53001 * 117.49779 * 244.79214 * 21 20 10 23 23 C 1.52994 * 60.00244 * 252.50889 * 22 21 20 24 24 H 0.97003 * 119.99668 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47343 * 60.00474 * 9 7 2 26 26 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 27 27 H 1.09000 * 109.47425 * 196.24764 * 11 10 9 28 28 H 1.08994 * 109.47411 * 316.24938 * 11 10 9 29 29 H 1.09004 * 109.46787 * 301.72945 * 12 11 10 30 30 H 1.09002 * 109.47347 * 61.72053 * 12 11 10 31 31 H 1.09004 * 109.47023 * 299.99897 * 13 12 11 32 32 H 1.09010 * 109.47145 * 59.99783 * 13 12 11 33 33 H 1.07990 * 120.42141 * 0.02562 * 15 14 13 34 34 H 1.07997 * 119.61568 * 180.25288 * 16 15 14 35 35 H 1.07998 * 119.62317 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.41731 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46755 * 320.52194 * 20 10 9 38 38 H 1.08997 * 109.47321 * 80.52654 * 20 10 9 39 39 H 1.09002 * 115.55016 * 30.49917 * 21 20 10 40 40 H 1.09004 * 117.49902 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49761 * 145.01723 * 22 21 20 42 42 H 1.08997 * 117.49836 * 252.51280 * 23 22 21 43 43 H 1.08998 * 117.49995 * 107.48449 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7317 -2.3799 1.7203 13 6 7.2426 -2.3850 1.9604 14 6 7.5199 -2.1441 3.4219 15 6 7.6922 -0.8572 3.9089 16 6 7.9408 -0.6748 5.2561 17 7 8.0242 -1.7070 6.0724 18 6 7.8706 -2.9445 5.6437 19 6 7.6147 -3.2041 4.3105 20 6 3.6513 -3.2612 -1.2541 21 6 3.6999 -4.7755 -1.0412 22 6 4.7535 -5.5650 -1.8205 23 6 3.2777 -5.6673 -2.2106 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6799 -0.8911 27 1 5.8342 -3.6044 -0.0490 28 1 5.9406 -1.8549 -0.3585 29 1 5.3206 -1.4138 2.0133 30 1 5.2668 -3.1674 2.3134 31 1 7.6538 -3.3511 1.6674 32 1 7.7075 -1.5974 1.3673 33 1 7.6291 -0.0082 3.2445 34 1 8.0720 0.3245 5.6440 35 1 7.9455 -3.7646 6.3423 36 1 7.4902 -4.2198 3.9654 37 1 2.6461 -2.9691 -1.5583 38 1 4.3621 -2.9806 -2.0313 39 1 3.4572 -5.1167 -0.0348 40 1 5.4124 -5.0055 -2.4846 41 1 5.2045 -6.4259 -1.3267 42 1 2.7576 -6.5954 -1.9735 43 1 2.9653 -5.1751 -3.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347295868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = 50.919676 kcal Electronic energy + Delta-G solvation = -20582.729488 eV Core-core repulsion = 17628.182425 eV Total energy + Delta-G solvation = -2954.547064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19671 -38.05317 -36.12966 -34.62822 -32.49823 -31.24603 -30.96089 -28.09368 -26.85836 -24.31586 -23.50626 -22.43834 -22.04769 -21.20445 -20.27776 -19.64869 -16.99579 -16.58648 -16.45457 -15.65481 -15.49802 -15.04987 -14.29686 -14.20310 -14.09844 -13.90183 -13.68061 -13.53156 -12.95820 -12.45591 -12.33856 -12.13701 -11.92776 -11.68143 -11.45930 -11.30263 -11.05364 -10.90957 -10.70728 -10.56148 -10.27049 -9.84902 -9.77169 -9.55989 -9.53390 -9.46181 -9.20826 -9.18089 -8.58817 -7.41622 -6.06609 -4.03624 1.08242 1.21311 3.25685 3.33974 3.34923 3.75736 4.10922 4.39521 4.40051 4.49538 4.68045 4.72336 5.05269 5.09077 5.12222 5.21516 5.24424 5.26856 5.34199 5.45518 5.56282 5.65907 5.69590 5.73859 5.79160 5.86485 5.89855 5.97708 6.05985 6.09178 6.24012 6.25818 6.31620 6.44575 6.49354 6.60243 6.66822 6.76020 6.87173 6.96131 7.61015 7.91119 7.91891 8.05810 8.64926 9.02964 9.55355 11.06522 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.005266 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.631424 B = 5316.131785 C = 7333.230124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.161 3.839 10 N -0.525 5.525 11 C 0.056 3.944 12 C -0.106 4.106 13 C -0.084 4.084 14 C -0.028 4.028 15 C -0.171 4.171 16 C 0.098 3.902 17 N -0.495 5.495 18 C 0.097 3.903 19 C -0.171 4.171 20 C 0.090 3.910 21 C -0.130 4.130 22 C -0.193 4.193 23 C -0.183 4.183 24 H 0.263 0.737 25 H 0.030 0.970 26 H -0.018 1.018 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.021 0.979 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 -6.986 2.929 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.100 0.900 9 C 0.035 3.965 10 N -0.248 5.248 11 C -0.073 4.073 12 C -0.144 4.144 13 C -0.122 4.122 14 C -0.036 4.036 15 C -0.191 4.191 16 C -0.059 4.059 17 N -0.204 5.204 18 C -0.060 4.060 19 C -0.191 4.191 20 C -0.038 4.038 21 C -0.149 4.149 22 C -0.230 4.230 23 C -0.220 4.220 24 H 0.073 0.927 25 H 0.048 0.952 26 H -0.001 1.001 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.113 0.887 38 H 0.039 0.961 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.964 -6.949 4.199 17.910 hybrid contribution 0.552 1.248 -1.582 2.089 sum 16.516 -5.701 2.617 17.667 Atomic orbital electron populations 1.69893 1.06103 1.26792 1.51061 1.24895 0.94704 0.98762 0.94901 0.86900 0.80392 0.84243 0.78432 1.20390 1.21144 1.19227 1.21054 0.88769 0.94717 1.50202 0.90029 1.20218 0.97042 0.84274 0.94972 1.61822 1.10418 1.18671 1.33919 1.22065 0.90252 0.99876 0.95113 1.21522 0.92357 1.03334 0.97220 1.20697 0.98177 1.02755 0.90528 1.20402 0.93415 0.93073 0.96721 1.22107 1.02020 0.97672 0.97296 1.22728 0.95138 0.97980 0.90032 1.67649 1.13745 0.99756 1.39267 1.22724 0.95125 0.94193 0.93969 1.22065 1.02330 1.00091 0.94616 1.21613 1.02013 0.90169 0.90007 1.22414 1.01823 0.93968 0.96661 1.23018 0.92114 1.03150 1.04678 1.22891 0.97169 1.01852 1.00097 0.92681 0.95189 1.00082 0.91619 0.95887 0.91407 0.91081 0.90640 0.90786 0.84847 0.82943 0.82970 0.84832 0.88668 0.96123 0.87304 0.89506 0.89552 0.89224 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -14.21 8.78 -34.44 -0.30 -14.51 16 8 H 0.08 2.49 7.57 -52.49 -0.40 2.09 16 9 C 0.16 3.81 3.61 -4.98 -0.02 3.79 16 10 N -0.53 -10.48 4.35 -236.08 -1.03 -11.51 16 11 C 0.06 0.89 4.81 -3.83 -0.02 0.87 16 12 C -0.11 -1.56 5.34 -26.74 -0.14 -1.70 16 13 C -0.08 -0.95 5.39 -27.89 -0.15 -1.10 16 14 C -0.03 -0.33 5.17 -104.32 -0.54 -0.87 16 15 C -0.17 -2.00 9.82 -39.44 -0.39 -2.39 16 16 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 17 N -0.49 -6.41 10.36 -13.25 -0.14 -6.54 16 18 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 19 C -0.17 -1.87 9.82 -39.44 -0.39 -2.26 16 20 C 0.09 1.67 5.06 -3.82 -0.02 1.65 16 21 C -0.13 -2.02 5.22 -90.62 -0.47 -2.49 16 22 C -0.19 -2.44 10.04 -26.73 -0.27 -2.71 16 23 C -0.18 -2.45 10.25 -26.73 -0.27 -2.73 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.03 0.72 5.69 -51.93 -0.30 0.43 16 26 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 27 H 0.07 0.94 7.21 -51.93 -0.37 0.57 16 28 H 0.02 0.37 7.99 -51.93 -0.42 -0.05 16 29 H 0.07 1.14 6.77 -51.93 -0.35 0.79 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.07 0.80 8.10 -51.92 -0.42 0.37 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.10 2.05 6.58 -51.93 -0.34 1.71 16 38 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 39 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.91 350.60 -10.45 -41.35 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.20 Total: 2.07 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -3.47 Total: -20.73 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.39 Total: -44.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.91 -10.45 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347295868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.273 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds