Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47080 * 270.00225 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.47206 * 150.00012 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00063 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00030 * 189.99975 * 10 9 7 12 12 C 1.52998 * 109.47304 * 76.25235 * 11 10 9 13 13 C 1.52991 * 109.47725 * 181.72903 * 12 11 10 14 14 C 1.50700 * 109.47485 * 180.02562 * 13 12 11 15 15 C 1.38661 * 120.78427 * 269.71619 * 14 13 12 16 16 C 1.38206 * 119.15518 * 179.79475 * 15 14 13 17 17 N 1.31867 * 120.76435 * 0.49487 * 16 15 14 18 18 C 1.31863 * 121.73244 * 359.73584 * 17 16 15 19 19 C 1.38210 * 120.76058 * 0.02562 * 18 17 16 20 20 C 1.46904 * 110.99850 * 66.05117 * 10 9 7 21 21 C 1.52999 * 109.47009 * 200.52811 * 20 10 9 22 22 C 1.53001 * 117.49779 * 244.79214 * 21 20 10 23 23 C 1.52994 * 60.00244 * 252.50889 * 22 21 20 24 24 H 0.97003 * 119.99668 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47343 * 60.00474 * 9 7 2 26 26 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 27 27 H 1.09000 * 109.47425 * 196.24764 * 11 10 9 28 28 H 1.08994 * 109.47411 * 316.24938 * 11 10 9 29 29 H 1.09004 * 109.46787 * 301.72945 * 12 11 10 30 30 H 1.09002 * 109.47347 * 61.72053 * 12 11 10 31 31 H 1.09004 * 109.47023 * 299.99897 * 13 12 11 32 32 H 1.09010 * 109.47145 * 59.99783 * 13 12 11 33 33 H 1.07990 * 120.42141 * 0.02562 * 15 14 13 34 34 H 1.07997 * 119.61568 * 180.25288 * 16 15 14 35 35 H 1.07998 * 119.62317 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.41731 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46755 * 320.52194 * 20 10 9 38 38 H 1.08997 * 109.47321 * 80.52654 * 20 10 9 39 39 H 1.09002 * 115.55016 * 30.49917 * 21 20 10 40 40 H 1.09004 * 117.49902 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49761 * 145.01723 * 22 21 20 42 42 H 1.08997 * 117.49836 * 252.51280 * 23 22 21 43 43 H 1.08998 * 117.49995 * 107.48449 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7317 -2.3799 1.7203 13 6 7.2426 -2.3850 1.9604 14 6 7.5199 -2.1441 3.4219 15 6 7.6922 -0.8572 3.9089 16 6 7.9408 -0.6748 5.2561 17 7 8.0242 -1.7070 6.0724 18 6 7.8706 -2.9445 5.6437 19 6 7.6147 -3.2041 4.3105 20 6 3.6513 -3.2612 -1.2541 21 6 3.6999 -4.7755 -1.0412 22 6 4.7535 -5.5650 -1.8205 23 6 3.2777 -5.6673 -2.2106 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6799 -0.8911 27 1 5.8342 -3.6044 -0.0490 28 1 5.9406 -1.8549 -0.3585 29 1 5.3206 -1.4138 2.0133 30 1 5.2668 -3.1674 2.3134 31 1 7.6538 -3.3511 1.6674 32 1 7.7075 -1.5974 1.3673 33 1 7.6291 -0.0082 3.2445 34 1 8.0720 0.3245 5.6440 35 1 7.9455 -3.7646 6.3423 36 1 7.4902 -4.2198 3.9654 37 1 2.6461 -2.9691 -1.5583 38 1 4.3621 -2.9806 -2.0313 39 1 3.4572 -5.1167 -0.0348 40 1 5.4124 -5.0055 -2.4846 41 1 5.2045 -6.4259 -1.3267 42 1 2.7576 -6.5954 -1.9735 43 1 2.9653 -5.1751 -3.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347295868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = 32.986508 kcal Electronic energy + Delta-G solvation = -20583.507129 eV Core-core repulsion = 17628.182425 eV Total energy + Delta-G solvation = -2955.324704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04916 -39.43004 -37.32912 -35.82267 -34.53013 -32.14851 -32.07219 -29.96968 -28.04270 -25.79980 -24.34464 -23.82465 -23.11136 -22.36680 -21.59770 -21.06068 -19.03241 -17.53486 -17.37522 -16.88135 -16.59635 -16.42673 -15.86832 -15.57044 -15.42591 -15.04106 -14.77147 -14.51463 -14.47343 -13.95248 -13.81077 -13.55829 -13.23278 -12.89083 -12.72259 -12.52172 -12.34970 -12.28741 -12.21402 -11.89307 -11.81403 -11.46989 -11.46841 -11.01043 -10.80120 -10.66398 -10.42241 -10.36348 -10.04346 -8.99497 -8.28416 -6.30815 0.24777 0.33694 1.31897 1.34075 1.44441 2.33095 2.87337 2.96766 3.04421 3.22588 3.61915 3.73078 3.86293 3.99638 4.12588 4.14085 4.20226 4.24448 4.29042 4.40436 4.45790 4.51281 4.62281 4.73169 4.75385 4.79139 4.82156 4.89014 4.93467 4.94633 5.01941 5.07940 5.14197 5.15333 5.23214 5.32184 5.38235 5.45717 5.53339 5.58772 5.84112 6.03777 6.44007 6.70774 6.76380 7.06255 7.32563 8.88336 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.005266 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.631424 B = 5316.131785 C = 7333.230124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.513 4.513 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.541 5.541 11 C 0.058 3.942 12 C -0.098 4.098 13 C -0.072 4.072 14 C -0.042 4.042 15 C -0.181 4.181 16 C 0.085 3.915 17 N -0.520 5.520 18 C 0.086 3.914 19 C -0.173 4.173 20 C 0.096 3.904 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.182 4.182 24 H 0.266 0.734 25 H 0.030 0.970 26 H -0.018 1.018 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.075 -7.515 2.602 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.264 5.264 11 C -0.070 4.070 12 C -0.137 4.137 13 C -0.109 4.109 14 C -0.050 4.050 15 C -0.201 4.201 16 C -0.071 4.071 17 N -0.230 5.230 18 C -0.070 4.070 19 C -0.192 4.192 20 C -0.032 4.032 21 C -0.172 4.172 22 C -0.198 4.198 23 C -0.219 4.219 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.000 1.000 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.188 0.812 35 H 0.193 0.807 36 H 0.173 0.827 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.870 -7.500 3.869 20.671 hybrid contribution -0.404 1.295 -1.476 2.005 sum 18.466 -6.205 2.393 19.627 Atomic orbital electron populations 1.70053 1.08106 1.27983 1.52782 1.25822 0.95549 1.02997 0.94523 0.85783 0.79581 0.78919 0.79107 1.19272 1.20792 1.17208 1.21282 0.91248 0.93113 1.49479 0.94472 1.19937 0.94025 0.86769 0.94701 1.61754 1.13435 1.16372 1.34850 1.22159 0.87415 1.01377 0.96046 1.21412 0.94800 1.01421 0.96044 1.20589 0.95465 1.04365 0.90501 1.20576 0.93901 0.93451 0.97115 1.22317 1.01985 0.98232 0.97544 1.23081 0.95070 0.98708 0.90238 1.67674 1.14621 1.00640 1.40093 1.23181 0.94641 0.94383 0.94815 1.22336 1.01496 1.00998 0.94399 1.21481 0.99667 0.92278 0.89763 1.22168 1.05919 0.92132 0.97029 1.23092 0.91420 1.02519 1.02805 1.22995 0.98564 1.01581 0.98798 0.92524 0.95166 1.00049 0.89258 0.95325 0.94038 0.92006 0.88473 0.89874 0.83835 0.81195 0.80679 0.82706 0.93120 0.95029 0.88524 0.88534 0.87278 0.87868 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 2 C 0.01 0.48 5.47 84.66 0.46 0.94 16 3 Si 0.94 44.14 27.47 68.60 1.88 46.03 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.51 -29.76 8.78 25.60 0.22 -29.53 16 8 H 0.04 2.42 7.57 -2.91 -0.02 2.40 16 9 C 0.17 8.21 3.61 85.56 0.31 8.52 16 10 N -0.54 -21.58 4.35 -900.81 -3.92 -25.50 16 11 C 0.06 1.73 4.81 86.30 0.41 2.14 16 12 C -0.10 -2.73 5.34 30.59 0.16 -2.56 16 13 C -0.07 -1.42 5.39 29.84 0.16 -1.26 16 14 C -0.04 -0.91 5.17 -19.67 -0.10 -1.01 16 15 C -0.18 -3.96 9.82 22.36 0.22 -3.74 16 16 C 0.09 1.90 11.18 84.68 0.95 2.85 16 17 N -0.52 -12.89 10.36 -195.85 -2.03 -14.92 16 18 C 0.09 1.79 11.18 84.68 0.95 2.74 16 19 C -0.17 -3.40 9.82 22.36 0.22 -3.18 16 20 C 0.10 3.60 5.06 86.30 0.44 4.04 16 21 C -0.15 -4.65 5.22 -10.79 -0.06 -4.71 16 22 C -0.16 -3.57 10.04 30.59 0.31 -3.26 16 23 C -0.18 -4.60 10.25 30.59 0.31 -4.29 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.03 1.44 5.69 -2.39 -0.01 1.43 16 26 H -0.02 -0.85 7.55 -2.39 -0.02 -0.87 16 27 H 0.09 2.26 7.21 -2.39 -0.02 2.25 16 28 H 0.03 0.84 7.99 -2.39 -0.02 0.82 16 29 H 0.04 1.36 6.77 -2.39 -0.02 1.34 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.08 1.52 8.10 -2.38 -0.02 1.50 16 33 H 0.14 2.72 8.06 -2.92 -0.02 2.70 16 34 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.05 2.31 6.58 -2.39 -0.02 2.30 16 38 H 0.03 1.09 7.72 -2.39 -0.02 1.07 16 39 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 41 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.53 350.60 2.11 -67.42 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.91 Total: 18.71 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 4.97 Total: -32.31 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -5.65 Total: -99.84 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -69.53 2.11 -67.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347295868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.406 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds