Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46896 * 109.47326 * 2 1 4 4 C 1.46898 * 111.00041 * 199.71429 * 3 2 1 5 5 C 1.50699 * 109.46992 * 66.04887 * 4 3 2 6 6 H 1.08005 * 120.00491 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47335 * 119.99622 * 9 7 5 12 12 H 1.48498 * 109.47188 * 240.00248 * 9 7 5 13 13 C 1.46895 * 111.00046 * 75.76093 * 3 2 1 14 14 C 1.50701 * 109.47222 * 199.76106 * 13 3 2 15 15 C 1.39451 * 119.66774 * 264.42365 * 14 13 3 16 16 N 1.30838 * 122.61477 * 179.97438 * 15 14 13 17 17 C 1.34234 * 121.18932 * 359.97438 * 16 15 14 18 18 N 1.32040 * 134.43309 * 180.02562 * 17 16 15 19 19 N 1.39916 * 109.07291 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.00201 * 179.97438 * 19 18 17 21 21 C 1.33858 * 109.99663 * 359.95128 * 19 18 17 22 22 C 1.50697 * 126.09340 * 180.02562 * 21 19 18 23 23 C 1.38264 * 107.81801 * 0.02562 * 21 19 18 24 24 C 1.36281 * 119.66509 * 84.40738 * 14 13 3 25 25 H 1.09003 * 109.46618 * 294.85808 * 1 2 3 26 26 H 1.08997 * 109.46954 * 54.85063 * 1 2 3 27 27 H 1.08997 * 109.47108 * 174.86113 * 1 2 3 28 28 H 1.09004 * 109.46293 * 240.00246 * 2 1 3 29 29 H 1.09001 * 109.47193 * 120.00547 * 2 1 3 30 30 H 1.09000 * 109.47424 * 186.04338 * 4 3 2 31 31 H 1.08994 * 109.46969 * 306.04633 * 4 3 2 32 32 H 0.96995 * 120.00016 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47150 * 79.76234 * 13 3 2 34 34 H 1.09004 * 109.47375 * 319.76224 * 13 3 2 35 35 H 1.08000 * 118.69181 * 0.02562 * 15 14 13 36 36 H 1.09003 * 109.46718 * 270.02048 * 22 21 19 37 37 H 1.09003 * 109.46868 * 30.01619 * 22 21 19 38 38 H 1.08994 * 109.47286 * 150.02000 * 22 21 19 39 39 H 1.07994 * 120.95964 * 359.74271 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4125 1.4509 -0.4626 5 6 3.4797 1.0469 -1.9129 6 1 2.5780 0.7685 -2.4384 7 6 4.6922 1.0326 -2.5691 8 7 5.7902 1.3711 -1.9292 9 14 4.7757 0.5312 -4.3666 10 1 3.4120 0.1986 -4.8516 11 1 5.3256 1.6534 -5.1686 12 1 5.6555 -0.6566 -4.5088 13 6 1.8773 1.9937 1.3292 14 6 1.9168 3.4947 1.2012 15 6 3.1197 4.1727 1.3966 16 7 3.2198 5.4736 1.2992 17 6 2.1535 6.2326 1.0012 18 7 1.9570 7.5283 0.8403 19 7 0.6107 7.7518 0.5320 20 1 0.2145 8.6219 0.3678 21 6 -0.0501 6.5882 0.4966 22 6 -1.5164 6.4087 0.1988 23 6 0.8524 5.5803 0.7819 24 6 0.7768 4.1759 0.8953 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 0.5916 -0.8403 27 1 -0.3633 -1.0235 -0.0920 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7844 2.4694 -0.3517 31 1 4.0253 0.7735 0.1320 32 1 6.6431 1.3614 -2.3909 33 1 2.6942 1.6621 1.9702 34 1 0.9260 1.6914 1.7673 35 1 4.0039 3.6011 1.6372 36 1 -2.0843 6.4570 1.1279 37 1 -1.8502 7.1997 -0.4727 38 1 -1.6751 5.4396 -0.2740 39 1 -0.1564 3.6553 0.7386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349818926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = 103.265503 kcal Electronic energy + Delta-G solvation = -20902.645152 eV Core-core repulsion = 17846.827631 eV Total energy + Delta-G solvation = -3055.817522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35198 -38.41159 -36.56052 -33.43632 -32.58787 -31.55183 -31.09305 -29.70928 -27.91007 -26.45803 -24.74278 -24.18437 -22.35475 -21.49977 -19.93674 -19.69551 -17.84790 -16.98027 -16.38145 -15.39156 -15.32155 -15.15321 -14.74108 -14.36482 -13.97825 -13.55105 -13.34220 -13.13479 -12.91410 -12.53362 -12.44420 -12.11032 -12.07465 -11.71643 -11.48973 -11.16970 -10.95779 -10.88091 -10.65914 -10.50826 -10.26660 -10.08968 -9.75965 -9.12857 -8.80572 -8.76001 -8.39587 -7.65347 -7.22469 -5.98514 -3.99024 0.66168 1.86576 2.54959 2.60061 3.33434 3.41167 3.44981 4.11179 4.22356 4.32139 4.47096 4.71859 5.00905 5.08824 5.15879 5.28246 5.37240 5.40869 5.47115 5.55383 5.68621 5.71389 5.79463 5.96968 6.05573 6.11625 6.17085 6.36288 6.45601 6.66645 6.75145 6.80440 6.94405 7.05132 7.34240 7.37713 7.62195 7.84456 8.13631 8.23686 8.37801 8.58085 9.08295 9.64711 11.12381 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.005310 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.384300 B = 5271.977806 C = 5882.098217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.533 5.533 4 C 0.190 3.810 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.099 3.901 14 C -0.155 4.155 15 C 0.218 3.782 16 N -0.482 5.482 17 C 0.272 3.728 18 N -0.301 5.301 19 N -0.420 5.420 20 H 0.441 0.559 21 C 0.122 3.878 22 C -0.094 4.094 23 C -0.253 4.253 24 C 0.022 3.978 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.019 0.981 30 H 0.034 0.966 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 6.261 7.066 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.258 5.258 4 C 0.065 3.935 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.030 4.030 14 C -0.159 4.159 15 C 0.034 3.966 16 N -0.194 5.194 17 C 0.010 3.990 18 N -0.132 5.132 19 N -0.122 5.122 20 H 0.286 0.714 21 C -0.019 4.019 22 C -0.153 4.153 23 C -0.264 4.264 24 C -0.007 4.007 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.180 0.820 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.506 8.340 6.831 18.073 hybrid contribution -0.538 -1.343 -0.822 1.664 sum -15.044 6.996 6.009 17.646 Atomic orbital electron populations 1.21802 0.96759 1.00291 1.01248 1.21979 0.94097 0.90219 1.01036 1.62186 1.25727 1.16629 1.21210 1.19799 0.81309 0.97039 0.95360 1.21175 0.93199 1.44576 0.95523 0.91914 1.24970 0.95721 0.95654 0.98196 1.69952 0.98423 1.48666 1.36480 0.86507 0.78000 0.78067 0.85239 1.19728 1.21108 1.21124 1.20889 1.00574 0.89294 0.92258 1.20190 0.93855 0.97106 1.04793 1.22999 0.96967 0.88663 0.87998 1.67530 1.27784 1.06004 1.18132 1.21376 0.89590 0.91138 0.96854 1.77716 0.91099 1.13754 1.30660 1.46293 1.07218 1.08198 1.50475 0.71405 1.21166 0.95313 0.86495 0.98975 1.20558 0.87154 1.04664 1.02916 1.20132 0.95014 0.95310 1.15993 1.20376 0.98553 0.89823 0.91984 0.93888 0.92223 0.93467 0.89541 0.96288 0.94754 0.99092 0.92991 0.94408 0.91110 0.82004 0.89550 0.90572 0.88828 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.96 37.16 0.37 -1.69 16 2 C 0.05 1.00 5.51 -3.82 -0.02 0.97 16 3 N -0.53 -10.80 4.34 -237.52 -1.03 -11.83 16 4 C 0.19 4.79 4.54 -4.98 -0.02 4.76 16 5 C -0.51 -14.05 8.23 -34.44 -0.28 -14.33 16 6 H 0.06 1.73 7.31 -52.48 -0.38 1.35 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.10 1.65 4.92 -4.98 -0.02 1.62 16 14 C -0.16 -2.67 5.01 -104.87 -0.52 -3.19 16 15 C 0.22 4.10 9.45 -17.52 -0.17 3.93 16 16 N -0.48 -9.88 10.45 -11.34 -0.12 -10.00 16 17 C 0.27 5.24 8.61 -156.49 -1.35 3.89 16 18 N -0.30 -5.30 12.69 31.94 0.41 -4.89 16 19 N -0.42 -5.09 7.17 33.83 0.24 -4.84 16 20 H 0.44 3.31 8.96 -182.74 -1.64 1.67 16 21 C 0.12 1.44 7.28 -81.70 -0.59 0.85 16 22 C -0.09 -0.63 10.44 36.00 0.38 -0.25 16 23 C -0.25 -4.03 6.27 -105.17 -0.66 -4.69 16 24 C 0.02 0.34 9.84 -39.20 -0.39 -0.05 16 25 H 0.04 0.55 6.89 -51.93 -0.36 0.19 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.77 6.58 -51.93 -0.34 1.43 16 29 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 30 H 0.03 0.93 6.30 -51.93 -0.33 0.60 16 31 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.04 0.63 7.88 -51.93 -0.41 0.22 16 34 H 0.07 1.00 6.53 -51.93 -0.34 0.66 16 35 H 0.16 2.87 7.94 -52.49 -0.42 2.46 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -34.80 325.92 -9.98 -44.77 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.72 Total: -2.25 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.38 Total: -6.68 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.23 Total: -57.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.80 -9.98 -44.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349818926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.040 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds