Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46896 * 109.47326 * 2 1 4 4 C 1.46898 * 111.00041 * 199.71429 * 3 2 1 5 5 C 1.50699 * 109.46992 * 66.04887 * 4 3 2 6 6 H 1.08005 * 120.00491 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47335 * 119.99622 * 9 7 5 12 12 H 1.48498 * 109.47188 * 240.00248 * 9 7 5 13 13 C 1.46895 * 111.00046 * 75.76093 * 3 2 1 14 14 C 1.50701 * 109.47222 * 199.76106 * 13 3 2 15 15 C 1.39451 * 119.66774 * 264.42365 * 14 13 3 16 16 N 1.30838 * 122.61477 * 179.97438 * 15 14 13 17 17 C 1.34234 * 121.18932 * 359.97438 * 16 15 14 18 18 N 1.32040 * 134.43309 * 180.02562 * 17 16 15 19 19 N 1.39916 * 109.07291 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.00201 * 179.97438 * 19 18 17 21 21 C 1.33858 * 109.99663 * 359.95128 * 19 18 17 22 22 C 1.50697 * 126.09340 * 180.02562 * 21 19 18 23 23 C 1.38264 * 107.81801 * 0.02562 * 21 19 18 24 24 C 1.36281 * 119.66509 * 84.40738 * 14 13 3 25 25 H 1.09003 * 109.46618 * 294.85808 * 1 2 3 26 26 H 1.08997 * 109.46954 * 54.85063 * 1 2 3 27 27 H 1.08997 * 109.47108 * 174.86113 * 1 2 3 28 28 H 1.09004 * 109.46293 * 240.00246 * 2 1 3 29 29 H 1.09001 * 109.47193 * 120.00547 * 2 1 3 30 30 H 1.09000 * 109.47424 * 186.04338 * 4 3 2 31 31 H 1.08994 * 109.46969 * 306.04633 * 4 3 2 32 32 H 0.96995 * 120.00016 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47150 * 79.76234 * 13 3 2 34 34 H 1.09004 * 109.47375 * 319.76224 * 13 3 2 35 35 H 1.08000 * 118.69181 * 0.02562 * 15 14 13 36 36 H 1.09003 * 109.46718 * 270.02048 * 22 21 19 37 37 H 1.09003 * 109.46868 * 30.01619 * 22 21 19 38 38 H 1.08994 * 109.47286 * 150.02000 * 22 21 19 39 39 H 1.07994 * 120.95964 * 359.74271 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4125 1.4509 -0.4626 5 6 3.4797 1.0469 -1.9129 6 1 2.5780 0.7685 -2.4384 7 6 4.6922 1.0326 -2.5691 8 7 5.7902 1.3711 -1.9292 9 14 4.7757 0.5312 -4.3666 10 1 3.4120 0.1986 -4.8516 11 1 5.3256 1.6534 -5.1686 12 1 5.6555 -0.6566 -4.5088 13 6 1.8773 1.9937 1.3292 14 6 1.9168 3.4947 1.2012 15 6 3.1197 4.1727 1.3966 16 7 3.2198 5.4736 1.2992 17 6 2.1535 6.2326 1.0012 18 7 1.9570 7.5283 0.8403 19 7 0.6107 7.7518 0.5320 20 1 0.2145 8.6219 0.3678 21 6 -0.0501 6.5882 0.4966 22 6 -1.5164 6.4087 0.1988 23 6 0.8524 5.5803 0.7819 24 6 0.7768 4.1759 0.8953 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 0.5916 -0.8403 27 1 -0.3633 -1.0235 -0.0920 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7844 2.4694 -0.3517 31 1 4.0253 0.7735 0.1320 32 1 6.6431 1.3614 -2.3909 33 1 2.6942 1.6621 1.9702 34 1 0.9260 1.6914 1.7673 35 1 4.0039 3.6011 1.6372 36 1 -2.0843 6.4570 1.1279 37 1 -1.8502 7.1997 -0.4727 38 1 -1.6751 5.4396 -0.2740 39 1 -0.1564 3.6553 0.7386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349818926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = 78.468020 kcal Electronic energy + Delta-G solvation = -20903.720452 eV Core-core repulsion = 17846.827631 eV Total energy + Delta-G solvation = -3056.892821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51368 -39.73205 -38.06421 -34.88338 -34.40480 -32.65519 -32.31259 -31.17702 -29.25927 -27.89196 -25.91181 -25.72928 -24.10607 -22.81034 -21.32043 -20.97480 -19.01341 -18.45356 -18.14817 -16.83426 -16.52209 -16.45335 -16.35495 -15.87711 -15.55587 -14.90837 -14.23150 -14.21857 -14.12219 -14.03920 -13.84270 -13.34969 -13.17875 -13.11937 -12.90391 -12.69783 -12.55899 -12.48842 -12.25852 -12.07497 -11.74395 -11.56056 -11.39738 -11.07560 -10.57954 -10.10987 -10.00274 -8.94421 -8.81495 -8.15922 -6.24313 -0.47980 0.57564 1.38325 1.39672 1.41103 1.53583 1.62987 2.41945 2.80937 3.00229 3.17300 3.36145 3.57711 3.80369 3.99669 4.09714 4.17664 4.35558 4.40736 4.44342 4.70150 4.74875 4.76841 4.80311 4.89006 4.92377 5.11738 5.17857 5.22491 5.28458 5.30670 5.43491 5.47505 5.60020 5.71148 5.71771 6.14712 6.19167 6.41800 6.47297 6.74939 6.93876 7.06571 7.44665 8.94930 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.005310 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.384300 B = 5271.977806 C = 5882.098217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.206 3.794 5 C -0.515 4.515 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.106 3.894 14 C -0.184 4.184 15 C 0.203 3.797 16 N -0.529 5.529 17 C 0.239 3.761 18 N -0.349 5.349 19 N -0.401 5.401 20 H 0.462 0.538 21 C 0.165 3.835 22 C -0.094 4.094 23 C -0.285 4.285 24 C 0.047 3.953 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.007 0.993 31 H -0.039 1.039 32 H 0.261 0.739 33 H 0.030 0.970 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 6.351 6.269 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 N -0.260 5.260 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.022 4.022 14 C -0.188 4.188 15 C 0.021 3.979 16 N -0.243 5.243 17 C -0.022 4.022 18 N -0.182 5.182 19 N -0.104 5.104 20 H 0.311 0.689 21 C 0.021 3.979 22 C -0.152 4.152 23 C -0.297 4.297 24 C 0.019 3.981 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.025 0.975 31 H -0.022 1.022 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.033 8.433 6.045 21.677 hybrid contribution 0.703 -1.237 -0.543 1.523 sum -18.330 7.196 5.502 20.446 Atomic orbital electron populations 1.21696 0.92957 1.01854 1.02301 1.22051 0.97082 0.88706 0.99845 1.62120 1.22000 1.18177 1.23686 1.19391 0.84035 0.94403 0.94173 1.21527 0.93189 1.43911 0.96768 0.91881 1.25879 0.95408 0.95746 1.02832 1.70095 0.99006 1.50081 1.38395 0.85437 0.78544 0.77670 0.79614 1.18375 1.21181 1.20340 1.20920 1.02129 0.88898 0.90296 1.20145 0.94010 0.97186 1.07505 1.22944 0.97687 0.88570 0.88670 1.67358 1.29817 1.06848 1.20305 1.21624 0.90813 0.92071 0.97692 1.77607 0.94080 1.13448 1.33043 1.46324 1.05732 1.09677 1.48667 0.68883 1.22013 0.97071 0.84781 0.94052 1.20897 0.82836 1.06354 1.05143 1.20477 0.94681 0.96360 1.18133 1.20756 0.99047 0.89754 0.88568 0.91440 0.92736 0.91421 0.92609 0.95732 0.97487 1.02151 0.92998 0.95190 0.87363 0.83349 0.86561 0.87505 0.87903 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.96 71.98 0.72 -2.58 16 2 C 0.05 1.81 5.51 86.31 0.48 2.28 16 3 N -0.54 -21.71 4.34 -905.37 -3.93 -25.65 16 4 C 0.21 10.91 4.54 85.56 0.39 11.29 16 5 C -0.52 -29.37 8.23 25.60 0.21 -29.16 16 6 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.11 3.49 4.92 85.56 0.42 3.91 16 14 C -0.18 -6.38 5.01 -20.03 -0.10 -6.48 16 15 C 0.20 8.25 9.45 85.13 0.80 9.05 16 16 N -0.53 -23.34 10.45 -189.80 -1.98 -25.32 16 17 C 0.24 9.47 8.61 136.86 1.18 10.64 16 18 N -0.35 -12.42 12.69 -52.86 -0.67 -13.09 16 19 N -0.40 -8.77 7.17 -46.87 -0.34 -9.11 16 20 H 0.46 5.49 8.96 -213.44 -1.91 3.58 16 21 C 0.16 3.31 7.28 42.26 0.31 3.62 16 22 C -0.09 -0.68 10.44 71.24 0.74 0.06 16 23 C -0.28 -8.64 6.27 -20.22 -0.13 -8.76 16 24 C 0.05 1.37 9.84 22.52 0.22 1.59 16 25 H 0.07 1.38 6.89 -2.39 -0.02 1.37 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 2.30 6.58 -2.39 -0.02 2.28 16 29 H 0.02 0.83 8.00 -2.39 -0.02 0.81 16 30 H 0.01 0.41 6.30 -2.39 -0.02 0.39 16 31 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.03 1.03 7.88 -2.39 -0.02 1.01 16 34 H 0.11 2.72 6.53 -2.38 -0.02 2.71 16 35 H 0.15 6.03 7.94 -2.91 -0.02 6.01 16 36 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.94 325.92 0.24 -81.69 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -0.85 Total: 5.89 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.70 Total: -4.12 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.64 Total: -130.87 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -81.94 0.24 -81.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349818926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.161 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds