Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46868 * 2 1 4 4 N 1.46504 * 109.46775 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00412 * 269.49307 * 4 3 2 6 6 H 1.08000 * 119.99669 * 325.90461 * 5 4 3 7 7 C 1.38812 * 119.99942 * 145.89681 * 5 4 3 8 8 N 1.31620 * 119.99898 * 336.78270 * 7 5 4 9 9 Si 1.86797 * 120.00084 * 156.78607 * 7 5 4 10 10 H 1.48501 * 109.47281 * 59.99674 * 9 7 5 11 11 H 1.48490 * 109.47473 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47101 * 300.00072 * 9 7 5 13 13 C 1.46503 * 119.99673 * 89.49548 * 4 3 2 14 14 C 1.50702 * 109.47183 * 89.99811 * 13 4 3 15 15 C 1.38903 * 119.62440 * 269.72771 * 14 13 4 16 16 C 1.36663 * 120.58066 * 180.25743 * 15 14 13 17 17 C 1.39081 * 119.80643 * 0.03821 * 16 15 14 18 18 C 1.40569 * 119.89440 * 359.96301 * 17 16 15 19 19 C 1.36410 * 119.61923 * 89.99938 * 14 13 4 20 20 N 1.34791 * 107.67042 * 180.02562 * 18 17 16 21 21 N 1.28637 * 110.32177 * 359.97438 * 20 18 17 22 22 N 1.37461 * 134.01212 * 180.02562 * 17 16 15 23 23 C 1.46506 * 126.75895 * 359.95539 * 22 17 16 24 24 H 1.09003 * 109.47047 * 300.00026 * 1 2 3 25 25 H 1.09008 * 109.46977 * 59.99782 * 1 2 3 26 26 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47051 * 239.99974 * 2 1 3 28 28 H 1.08999 * 109.46812 * 120.00105 * 2 1 3 29 29 H 1.09003 * 109.47308 * 60.00134 * 3 2 1 30 30 H 1.08999 * 109.47490 * 299.99690 * 3 2 1 31 31 H 0.97002 * 119.99538 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47236 * 330.00095 * 13 4 3 33 33 H 1.08994 * 109.47206 * 210.00130 * 13 4 3 34 34 H 1.07998 * 119.70819 * 0.27871 * 15 14 13 35 35 H 1.08003 * 120.09685 * 179.97438 * 16 15 14 36 36 H 1.07992 * 120.10683 * 359.74394 * 19 14 13 37 37 H 1.08997 * 109.46773 * 270.02214 * 23 22 17 38 38 H 1.09003 * 109.46773 * 30.02465 * 23 22 17 39 39 H 1.08997 * 109.46996 * 150.01807 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.4532 1.1867 6 1 3.7882 1.9852 2.0367 7 6 5.3983 0.7801 1.2965 8 7 5.6756 -0.2126 0.4780 9 14 6.6317 1.2831 2.6061 10 1 6.0157 1.1355 3.9492 11 1 7.8332 0.4153 2.5140 12 1 7.0272 2.6990 2.3958 13 6 4.2380 1.4311 -1.2678 14 6 4.4893 2.8480 -1.7155 15 6 3.5611 3.4862 -2.5282 16 6 3.7718 4.7689 -2.9499 17 6 4.9255 5.4429 -2.5638 18 6 5.8688 4.8027 -1.7415 19 6 5.6285 3.4872 -1.3225 20 7 6.8765 5.6708 -1.5223 21 7 6.6483 6.7823 -2.1282 22 7 5.4234 6.7009 -2.8071 23 6 4.7984 7.7497 -3.6168 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.5206 -0.6827 0.5545 32 1 3.6492 0.9106 -2.0231 33 1 5.1903 0.9185 -1.1326 34 1 2.6648 2.9642 -2.8292 35 1 3.0450 5.2575 -3.5821 36 1 6.3433 2.9810 -0.6908 37 1 5.1293 7.6559 -4.6511 38 1 3.7142 7.6462 -3.5713 39 1 5.0865 8.7273 -3.2303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352647220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = 126.248510 kcal Electronic energy + Delta-G solvation = -21086.172441 eV Core-core repulsion = 18031.351537 eV Total energy + Delta-G solvation = -3054.820904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65511 -37.79433 -35.74188 -34.42106 -32.93578 -31.23354 -30.19044 -29.73262 -27.44083 -25.71564 -25.56357 -23.30664 -22.29017 -21.09528 -20.79849 -19.84673 -17.32787 -16.98539 -16.37312 -15.81531 -15.22390 -14.54379 -14.30441 -13.93560 -13.84684 -13.66221 -13.46180 -13.15022 -13.01621 -12.68874 -12.03953 -11.94635 -11.57722 -11.42333 -11.34280 -11.05839 -10.96172 -10.72658 -10.56001 -10.44752 -10.31636 -10.19943 -9.96775 -9.91249 -9.68839 -8.52793 -8.36478 -7.73170 -6.67877 -5.84039 -3.35060 0.88404 1.83653 2.34867 2.62106 3.39149 3.45997 3.51549 4.13959 4.48027 4.50140 4.53618 4.98057 5.02337 5.19832 5.23941 5.30394 5.48475 5.55328 5.63612 5.73074 5.79949 5.82605 6.12043 6.13658 6.25903 6.31196 6.42554 6.49302 6.58138 6.60495 6.66643 6.81201 6.92148 7.03503 7.22043 7.25644 7.30291 7.63526 7.79927 8.38016 8.45858 9.13020 9.76652 10.32245 11.16591 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.006498 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.165196 B = 4308.277549 C = 5741.029927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.575 5.575 5 C -0.253 4.253 6 H 0.061 0.939 7 C 0.013 3.987 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.173 3.827 14 C -0.092 4.092 15 C -0.049 4.049 16 C -0.143 4.143 17 C 0.076 3.924 18 C -0.014 4.014 19 C -0.020 4.020 20 N -0.220 5.220 21 N -0.033 5.033 22 N -0.409 5.409 23 C 0.107 3.893 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.257 0.743 32 H 0.037 0.963 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 8.595 -9.051 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.383 4.383 6 H 0.079 0.921 7 C -0.188 4.188 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.047 3.953 14 C -0.098 4.098 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.044 4.044 18 C -0.138 4.138 19 C -0.044 4.044 20 N -0.098 5.098 21 N -0.012 5.012 22 N -0.205 5.205 23 C -0.035 4.035 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.290 9.435 -8.749 13.912 hybrid contribution -0.267 -0.081 0.359 0.455 sum -5.557 9.354 -8.390 13.739 Atomic orbital electron populations 1.21761 0.97834 1.00317 1.00634 1.22084 0.92962 1.00786 1.02182 1.20947 0.85062 0.93458 0.98246 1.43810 0.99376 1.84394 1.01810 1.19015 1.03137 1.25672 0.90478 0.92109 1.25021 1.00556 0.95087 0.98117 1.69956 1.23848 1.18950 1.39753 0.86597 0.81147 0.78720 0.81866 1.20741 1.21465 1.20436 1.20079 1.01173 0.87636 0.86424 1.20874 0.92334 1.01485 0.95147 1.20886 0.98401 0.92974 0.94906 1.19648 0.95634 0.95610 1.05613 1.19295 0.97867 0.86391 1.00833 1.19929 0.92771 0.97271 1.03856 1.20184 0.97774 0.89528 0.96871 1.74496 1.22192 0.97867 1.15245 1.81518 0.96902 1.16127 1.06666 1.49961 1.17739 1.11094 1.41734 1.21817 0.97989 0.89496 0.94239 0.93460 0.93714 0.93886 0.92978 0.91825 0.94012 0.94902 0.93322 0.94410 0.87212 0.85367 0.86138 0.84661 0.90676 0.89521 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.59 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.92 5.67 -4.04 -0.02 2.90 16 4 N -0.58 -13.24 2.43 -174.60 -0.42 -13.67 16 5 C -0.25 -6.57 9.48 -15.06 -0.14 -6.71 16 6 H 0.06 1.61 7.93 -52.49 -0.42 1.20 16 7 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 8 N -0.88 -23.97 11.34 55.49 0.63 -23.34 16 9 Si 0.89 21.28 29.61 -169.99 -5.03 16.24 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.17 3.73 5.40 -5.19 -0.03 3.70 16 14 C -0.09 -1.78 5.42 -105.03 -0.57 -2.35 16 15 C -0.05 -0.78 9.61 -39.90 -0.38 -1.17 16 16 C -0.14 -2.08 10.01 -39.84 -0.40 -2.48 16 17 C 0.08 1.30 6.94 -84.15 -0.58 0.71 16 18 C -0.01 -0.28 7.26 -84.97 -0.62 -0.90 16 19 C -0.02 -0.42 9.67 -39.53 -0.38 -0.80 16 20 N -0.22 -4.51 12.36 32.08 0.40 -4.12 16 21 N -0.03 -0.60 13.73 60.35 0.83 0.23 16 22 N -0.41 -6.25 4.12 -65.48 -0.27 -6.52 16 23 C 0.11 0.96 11.54 59.85 0.69 1.65 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 33 H 0.11 2.71 5.26 -51.93 -0.27 2.44 16 34 H 0.13 1.72 8.05 -52.49 -0.42 1.30 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.14 3.04 8.06 -52.49 -0.42 2.62 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -29.79 331.94 -6.92 -36.71 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.73 Total: -0.82 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.32 Total: -9.73 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 1.16 Total: -47.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.79 -6.92 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352647220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.962 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds