Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46868 * 2 1 4 4 N 1.46504 * 109.46775 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00412 * 269.49307 * 4 3 2 6 6 H 1.08000 * 119.99669 * 325.90461 * 5 4 3 7 7 C 1.38812 * 119.99942 * 145.89681 * 5 4 3 8 8 N 1.31620 * 119.99898 * 336.78270 * 7 5 4 9 9 Si 1.86797 * 120.00084 * 156.78607 * 7 5 4 10 10 H 1.48501 * 109.47281 * 59.99674 * 9 7 5 11 11 H 1.48490 * 109.47473 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47101 * 300.00072 * 9 7 5 13 13 C 1.46503 * 119.99673 * 89.49548 * 4 3 2 14 14 C 1.50702 * 109.47183 * 89.99811 * 13 4 3 15 15 C 1.38903 * 119.62440 * 269.72771 * 14 13 4 16 16 C 1.36663 * 120.58066 * 180.25743 * 15 14 13 17 17 C 1.39081 * 119.80643 * 0.03821 * 16 15 14 18 18 C 1.40569 * 119.89440 * 359.96301 * 17 16 15 19 19 C 1.36410 * 119.61923 * 89.99938 * 14 13 4 20 20 N 1.34791 * 107.67042 * 180.02562 * 18 17 16 21 21 N 1.28637 * 110.32177 * 359.97438 * 20 18 17 22 22 N 1.37461 * 134.01212 * 180.02562 * 17 16 15 23 23 C 1.46506 * 126.75895 * 359.95539 * 22 17 16 24 24 H 1.09003 * 109.47047 * 300.00026 * 1 2 3 25 25 H 1.09008 * 109.46977 * 59.99782 * 1 2 3 26 26 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47051 * 239.99974 * 2 1 3 28 28 H 1.08999 * 109.46812 * 120.00105 * 2 1 3 29 29 H 1.09003 * 109.47308 * 60.00134 * 3 2 1 30 30 H 1.08999 * 109.47490 * 299.99690 * 3 2 1 31 31 H 0.97002 * 119.99538 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47236 * 330.00095 * 13 4 3 33 33 H 1.08994 * 109.47206 * 210.00130 * 13 4 3 34 34 H 1.07998 * 119.70819 * 0.27871 * 15 14 13 35 35 H 1.08003 * 120.09685 * 179.97438 * 16 15 14 36 36 H 1.07992 * 120.10683 * 359.74394 * 19 14 13 37 37 H 1.08997 * 109.46773 * 270.02214 * 23 22 17 38 38 H 1.09003 * 109.46773 * 30.02465 * 23 22 17 39 39 H 1.08997 * 109.46996 * 150.01807 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.4532 1.1867 6 1 3.7882 1.9852 2.0367 7 6 5.3983 0.7801 1.2965 8 7 5.6756 -0.2126 0.4780 9 14 6.6317 1.2831 2.6061 10 1 6.0157 1.1355 3.9492 11 1 7.8332 0.4153 2.5140 12 1 7.0272 2.6990 2.3958 13 6 4.2380 1.4311 -1.2678 14 6 4.4893 2.8480 -1.7155 15 6 3.5611 3.4862 -2.5282 16 6 3.7718 4.7689 -2.9499 17 6 4.9255 5.4429 -2.5638 18 6 5.8688 4.8027 -1.7415 19 6 5.6285 3.4872 -1.3225 20 7 6.8765 5.6708 -1.5223 21 7 6.6483 6.7823 -2.1282 22 7 5.4234 6.7009 -2.8071 23 6 4.7984 7.7497 -3.6168 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.5206 -0.6827 0.5545 32 1 3.6492 0.9106 -2.0231 33 1 5.1903 0.9185 -1.1326 34 1 2.6648 2.9642 -2.8292 35 1 3.0450 5.2575 -3.5821 36 1 6.3433 2.9810 -0.6908 37 1 5.1293 7.6559 -4.6511 38 1 3.7142 7.6462 -3.5713 39 1 5.0865 8.7273 -3.2303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352647220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = 108.768740 kcal Electronic energy + Delta-G solvation = -21086.930421 eV Core-core repulsion = 18031.351537 eV Total energy + Delta-G solvation = -3055.578883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.99695 -39.26616 -37.34002 -35.61438 -34.56120 -32.92442 -31.53941 -31.22482 -28.47368 -27.38943 -27.15600 -24.67639 -23.84150 -22.54653 -22.06114 -21.44620 -18.95864 -18.28029 -17.90311 -17.03665 -16.91383 -16.19525 -15.87520 -15.59274 -15.15769 -14.98299 -14.87627 -14.32047 -14.10011 -13.86417 -13.55690 -13.39779 -13.16504 -12.87994 -12.76718 -12.67621 -12.51361 -12.44589 -12.12404 -12.05561 -11.84066 -11.74645 -11.54455 -11.47715 -11.22713 -10.50661 -9.71504 -9.09784 -8.57643 -7.82934 -5.35989 -0.45548 0.45771 1.25432 1.25673 1.40804 1.47086 1.51941 2.49668 2.75030 3.17041 3.27351 3.55399 3.70751 3.88518 4.02649 4.28987 4.36125 4.40192 4.43707 4.51882 4.57112 4.64612 4.65221 4.78086 4.90144 4.97474 5.01856 5.06845 5.15038 5.25408 5.35737 5.40763 5.55125 5.63310 5.66086 5.68651 5.82856 5.89384 5.98431 6.49552 7.01112 7.18947 7.90861 8.38534 9.13027 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.006498 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.165196 B = 4308.277549 C = 5741.029927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.146 3.854 4 N -0.589 5.589 5 C -0.253 4.253 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.905 5.905 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.177 3.823 14 C -0.089 4.089 15 C -0.052 4.052 16 C -0.111 4.111 17 C 0.073 3.927 18 C -0.039 4.039 19 C -0.054 4.054 20 N -0.266 5.266 21 N -0.044 5.044 22 N -0.389 5.389 23 C 0.088 3.912 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 10.642 -11.479 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.021 3.979 4 N -0.308 5.308 5 C -0.384 4.384 6 H 0.067 0.933 7 C -0.222 4.222 8 N -0.549 5.549 9 Si 0.759 3.241 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.218 1.218 13 C 0.051 3.949 14 C -0.096 4.096 15 C -0.074 4.074 16 C -0.133 4.133 17 C -0.048 4.048 18 C -0.164 4.164 19 C -0.078 4.078 20 N -0.143 5.143 21 N -0.023 5.023 22 N -0.186 5.186 23 C -0.050 4.050 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.561 11.521 -11.188 18.199 hybrid contribution 0.678 -0.562 0.986 1.322 sum -7.883 10.959 -10.202 16.921 Atomic orbital electron populations 1.21664 0.94272 1.01535 1.02053 1.21939 0.96004 0.99380 0.99887 1.21099 0.82947 0.94345 0.99479 1.43980 1.00912 1.84667 1.01258 1.19092 1.03423 1.24511 0.91392 0.93286 1.25408 1.01717 0.95520 0.99576 1.70044 1.23777 1.20026 1.41103 0.85929 0.79892 0.77468 0.80824 1.20093 1.21679 1.21777 1.19891 0.99566 0.89119 0.86352 1.20665 0.92788 1.00101 0.95999 1.21132 0.98556 0.93690 0.94016 1.20159 0.94800 0.94567 1.03772 1.19599 0.98037 0.86918 1.00295 1.20061 0.93995 0.97220 1.05158 1.19929 0.98487 0.90670 0.98686 1.74472 1.23660 0.98853 1.17352 1.81388 0.98500 1.15500 1.06941 1.50431 1.16355 1.11521 1.40301 1.22464 0.99638 0.88378 0.94564 0.92908 0.91362 0.92852 0.93887 0.95560 0.94556 0.91655 0.93942 0.92653 0.90937 0.81809 0.80636 0.88654 0.88214 0.86271 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.13 -4.74 6.26 30.60 0.19 -4.55 16 3 C 0.15 5.52 5.67 86.38 0.49 6.01 16 4 N -0.59 -27.35 2.43 -706.33 -1.72 -29.07 16 5 C -0.25 -13.60 9.48 84.03 0.80 -12.80 16 6 H 0.05 2.70 7.93 -2.91 -0.02 2.67 16 7 C -0.02 -1.34 4.94 84.86 0.42 -0.92 16 8 N -0.91 -51.62 11.34 21.65 0.25 -51.38 16 9 Si 0.93 45.95 29.61 68.60 2.03 47.99 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 13 C 0.18 7.70 5.40 85.63 0.46 8.16 16 14 C -0.09 -3.43 5.42 -20.13 -0.11 -3.54 16 15 C -0.05 -1.45 9.61 22.06 0.21 -1.24 16 16 C -0.11 -2.67 10.01 22.10 0.22 -2.45 16 17 C 0.07 2.29 6.94 39.03 0.27 2.56 16 18 C -0.04 -1.59 7.26 39.72 0.29 -1.30 16 19 C -0.05 -2.36 9.67 22.30 0.22 -2.14 16 20 N -0.27 -11.26 12.36 -52.43 -0.65 -11.91 16 21 N -0.04 -1.58 13.73 37.02 0.51 -1.07 16 22 N -0.39 -10.69 4.12 -361.09 -1.49 -12.17 16 23 C 0.09 1.15 11.54 127.77 1.47 2.62 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.40 8.03 -2.39 -0.02 1.38 16 30 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 33 H 0.07 3.78 5.26 -2.39 -0.01 3.76 16 34 H 0.16 3.42 8.05 -2.91 -0.02 3.40 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.59 331.94 5.61 -64.98 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.03 Total: 5.10 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.65 Total: -12.47 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -3.10 Total: -105.60 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.59 5.61 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352647220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.751 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds