Wall clock time and date at job start Mon Mar 30 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38897 * 119.62548 * 90.00220 * 15 14 12 17 17 C 1.36666 * 120.58041 * 179.97438 * 16 15 14 18 18 C 1.39085 * 119.80897 * 0.02562 * 17 16 15 19 19 C 1.40566 * 119.88738 * 359.97438 * 18 17 16 20 20 C 1.36418 * 119.61719 * 269.72286 * 15 14 12 21 21 N 1.34799 * 107.67059 * 179.97438 * 19 18 17 22 22 N 1.28640 * 110.31829 * 359.97438 * 21 19 18 23 23 N 1.37454 * 134.01679 * 179.97438 * 18 17 16 24 24 C 1.46495 * 126.75751 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 119.71016 * 359.97232 * 16 15 14 35 35 H 1.07997 * 120.10260 * 179.97438 * 17 16 15 36 36 H 1.07997 * 120.10461 * 0.02562 * 20 15 14 37 37 H 1.09002 * 109.47551 * 90.00388 * 24 23 18 38 38 H 1.09003 * 109.47744 * 210.00003 * 24 23 18 39 39 H 1.09004 * 109.47266 * 330.00424 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.6164 -0.0677 3.9629 17 6 4.2857 -0.5936 5.0321 18 6 3.7138 -1.6281 5.7650 19 6 2.4506 -2.1277 5.4035 20 6 1.7828 -1.5671 4.3064 21 7 2.1374 -3.1130 6.2684 22 7 3.0824 -3.2709 7.1268 23 7 4.1121 -2.3560 6.8609 24 6 5.3655 -2.2064 7.6043 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 4.0621 0.7353 3.3947 35 1 5.2562 -0.2076 5.3067 36 1 0.8098 -1.9366 4.0179 37 1 5.2273 -1.4830 8.4079 38 1 5.6541 -3.1686 8.0275 39 1 6.1478 -1.8563 6.9309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353418899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:51 Heat of formation + Delta-G solvation = 124.121038 kcal Electronic energy + Delta-G solvation = -20759.562600 eV Core-core repulsion = 17704.649442 eV Total energy + Delta-G solvation = -3054.913158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04002 -38.50536 -36.52912 -34.74137 -32.88786 -31.00991 -30.48448 -28.46492 -27.66564 -26.64715 -25.18350 -23.88538 -23.46215 -21.38883 -21.16423 -19.22089 -17.50506 -17.18570 -16.15637 -16.13116 -15.50581 -15.17237 -14.36743 -14.25355 -14.12898 -13.67137 -13.51818 -13.21339 -13.11633 -12.62481 -12.27034 -11.93423 -11.87167 -11.65061 -11.32339 -11.08361 -11.02297 -10.81196 -10.75472 -10.59666 -10.56580 -10.44497 -10.01584 -9.83198 -8.91870 -8.71087 -8.38994 -8.20413 -7.16134 -6.01448 -4.05092 0.51316 1.37750 2.03735 2.26468 3.32868 3.37101 3.40183 3.68421 4.09662 4.27043 4.42152 4.63146 4.79623 4.85717 5.02943 5.10533 5.21043 5.24737 5.30383 5.32932 5.64780 5.78828 5.93234 6.09745 6.12819 6.25477 6.30518 6.41418 6.51620 6.67052 6.70745 6.79253 6.84126 6.92082 7.10855 7.46811 7.71827 7.82344 8.01959 8.09547 8.36777 8.57839 9.00582 9.59978 11.05579 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034216 B = 0.003737 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.135608 B = 7490.686529 C = 7586.131321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.030 3.970 14 C 0.089 3.911 15 C -0.073 4.073 16 C -0.037 4.037 17 C -0.132 4.132 18 C 0.083 3.917 19 C -0.016 4.016 20 C -0.035 4.035 21 N -0.220 5.220 22 N -0.023 5.023 23 N -0.404 5.404 24 C 0.103 3.897 25 H 0.088 0.912 26 H 0.031 0.969 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.852 -1.414 16.884 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.119 4.119 14 C -0.039 4.039 15 C -0.077 4.077 16 C -0.059 4.059 17 C -0.154 4.154 18 C -0.038 4.038 19 C -0.140 4.140 20 C -0.058 4.058 21 N -0.098 5.098 22 N -0.003 5.003 23 N -0.199 5.199 24 C -0.039 4.039 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.891 -2.458 17.688 19.142 hybrid contribution -0.065 0.312 -1.322 1.360 sum 6.827 -2.146 16.366 17.862 Atomic orbital electron populations 1.22419 1.00840 0.99463 1.00591 1.19329 0.89785 0.94546 0.85800 0.94181 1.21081 1.30635 1.12511 0.89645 0.91980 1.24916 0.95218 0.95122 0.98963 1.69872 1.36992 1.23055 1.23509 0.86591 0.79217 0.79640 0.82135 1.21418 1.20248 1.20379 1.62403 1.59468 1.02003 1.01356 1.22316 0.97181 0.91172 1.01220 1.21036 0.96332 0.98042 0.88466 1.19610 0.95156 0.96199 0.96688 1.20842 0.93303 0.98140 0.93618 1.19759 1.01199 0.97060 0.97424 1.19370 0.96290 0.97068 0.91025 1.19746 0.94914 0.98842 1.00529 1.20118 0.99834 0.94499 0.91321 1.74522 1.19091 1.14196 1.02017 1.81576 0.91876 1.09234 1.17599 1.50042 1.17587 1.28387 1.23917 1.21912 0.81179 1.04248 0.96526 0.89323 0.95007 0.97299 0.92955 0.90869 0.93677 0.96232 0.90222 0.94262 0.84169 0.85358 0.84785 0.90328 0.88797 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.28 37.16 0.31 -3.75 16 2 C 0.21 5.09 2.34 -68.87 -0.16 4.92 16 3 H 0.04 1.05 8.03 -51.92 -0.42 0.63 16 4 C -0.50 -13.32 7.94 -34.44 -0.27 -13.59 16 5 H 0.06 1.66 6.75 -52.49 -0.35 1.31 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.53 -10.76 4.73 -237.73 -1.13 -11.88 16 13 C 0.03 0.57 8.53 60.06 0.51 1.09 16 14 C 0.09 1.50 4.54 -4.98 -0.02 1.47 16 15 C -0.07 -1.07 4.86 -105.03 -0.51 -1.58 16 16 C -0.04 -0.47 9.61 -39.91 -0.38 -0.85 16 17 C -0.13 -1.52 10.01 -39.84 -0.40 -1.92 16 18 C 0.08 1.12 6.94 -84.15 -0.58 0.54 16 19 C -0.02 -0.25 7.26 -84.97 -0.62 -0.86 16 20 C -0.03 -0.52 7.87 -39.52 -0.31 -0.83 16 21 N -0.22 -3.60 12.36 32.08 0.40 -3.20 16 22 N -0.02 -0.35 13.73 60.35 0.83 0.48 16 23 N -0.40 -4.93 4.12 -65.49 -0.27 -5.20 16 24 C 0.10 0.68 11.54 59.84 0.69 1.37 16 25 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 26 H 0.03 0.73 6.38 -51.93 -0.33 0.39 16 27 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 30 H 0.04 0.79 5.89 -51.93 -0.31 0.49 16 31 H 0.02 0.37 6.28 -51.93 -0.33 0.05 16 32 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 33 H 0.04 0.66 6.86 -51.93 -0.36 0.30 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.93 7.96 -52.49 -0.42 1.51 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -30.49 316.44 -6.82 -37.30 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.18 Total: -1.47 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.85 Total: -12.51 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.46 Total: -44.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.49 -6.82 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353418899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.423 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds