Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.38897 * 119.62548 * 90.00220 * 15 14 12 17 17 C 1.36666 * 120.58041 * 179.97438 * 16 15 14 18 18 C 1.39085 * 119.80897 * 0.02562 * 17 16 15 19 19 C 1.40566 * 119.88738 * 359.97438 * 18 17 16 20 20 C 1.36418 * 119.61719 * 269.72286 * 15 14 12 21 21 N 1.34799 * 107.67059 * 179.97438 * 19 18 17 22 22 N 1.28640 * 110.31829 * 359.97438 * 21 19 18 23 23 N 1.37454 * 134.01679 * 179.97438 * 18 17 16 24 24 C 1.46495 * 126.75751 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 119.71016 * 359.97232 * 16 15 14 35 35 H 1.07997 * 120.10260 * 179.97438 * 17 16 15 36 36 H 1.07997 * 120.10461 * 0.02562 * 20 15 14 37 37 H 1.09002 * 109.47551 * 90.00388 * 24 23 18 38 38 H 1.09003 * 109.47744 * 210.00003 * 24 23 18 39 39 H 1.09004 * 109.47266 * 330.00424 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.6164 -0.0677 3.9629 17 6 4.2857 -0.5936 5.0321 18 6 3.7138 -1.6281 5.7650 19 6 2.4506 -2.1277 5.4035 20 6 1.7828 -1.5671 4.3064 21 7 2.1374 -3.1130 6.2684 22 7 3.0824 -3.2709 7.1268 23 7 4.1121 -2.3560 6.8609 24 6 5.3655 -2.2064 7.6043 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 4.0621 0.7353 3.3947 35 1 5.2562 -0.2076 5.3067 36 1 0.8098 -1.9366 4.0179 37 1 5.2273 -1.4830 8.4079 38 1 5.6541 -3.1686 8.0275 39 1 6.1478 -1.8563 6.9309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353418899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = 104.011306 kcal Electronic energy + Delta-G solvation = -20760.434623 eV Core-core repulsion = 17704.649442 eV Total energy + Delta-G solvation = -3055.785181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.07135 -39.79983 -37.98030 -35.66598 -34.74064 -32.33518 -31.52680 -30.13462 -28.58269 -27.97567 -27.15639 -25.34038 -24.56629 -22.66104 -22.12973 -20.93546 -18.60009 -18.16651 -18.03671 -17.15560 -16.95351 -16.55957 -16.07182 -15.53254 -15.21109 -14.92593 -14.61397 -14.40539 -14.29369 -13.86386 -13.55916 -13.37742 -13.14165 -13.01774 -12.72961 -12.67611 -12.56735 -12.50688 -12.39953 -12.19017 -11.97538 -11.73805 -11.55873 -11.54824 -10.87181 -10.44611 -9.79046 -9.24776 -8.78969 -8.06688 -6.16611 -0.51757 0.31630 1.20375 1.21112 1.46177 1.46560 1.54183 2.45530 2.61792 3.06836 3.22907 3.50486 3.58657 3.68364 3.87415 4.06840 4.23542 4.38156 4.46000 4.50568 4.61094 4.64839 4.70712 4.73020 4.83588 4.89839 4.96335 4.96843 5.07103 5.19301 5.23160 5.28125 5.57861 5.59098 5.62711 5.76279 5.80146 5.85491 6.23164 6.50953 6.77364 6.95936 6.96692 7.52343 8.98955 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034216 B = 0.003737 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.135608 B = 7490.686529 C = 7586.131321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.216 3.784 3 H 0.016 0.984 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.275 1.275 12 N -0.534 5.534 13 C 0.038 3.962 14 C 0.093 3.907 15 C -0.075 4.075 16 C -0.045 4.045 17 C -0.111 4.111 18 C 0.076 3.924 19 C -0.037 4.037 20 C -0.047 4.047 21 N -0.255 5.255 22 N -0.040 5.040 23 N -0.390 5.390 24 C 0.087 3.913 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -1.265 18.023 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.034 0.966 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.200 1.200 12 N -0.257 5.257 13 C -0.110 4.110 14 C -0.035 4.035 15 C -0.079 4.079 16 C -0.067 4.067 17 C -0.133 4.133 18 C -0.046 4.046 19 C -0.163 4.163 20 C -0.070 4.070 21 N -0.132 5.132 22 N -0.020 5.020 23 N -0.186 5.186 24 C -0.052 4.052 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.974 -2.329 18.867 21.022 hybrid contribution -0.621 0.281 -1.541 1.685 sum 8.353 -2.048 17.326 19.343 Atomic orbital electron populations 1.22230 1.00510 0.99089 1.00215 1.19084 0.89884 0.93285 0.86836 0.96590 1.21367 1.30506 1.12405 0.90982 0.92660 1.25621 0.95462 0.95792 1.01614 1.69994 1.37867 1.24151 1.23969 0.85673 0.78784 0.78597 0.78918 1.21134 1.19753 1.20050 1.62272 1.59571 1.02325 1.01558 1.22218 0.97003 0.90696 1.01105 1.21026 0.96640 0.98125 0.87687 1.19430 0.96068 0.96444 0.95951 1.21046 0.92591 0.98730 0.94354 1.20115 1.02195 0.95276 0.95727 1.19664 0.95801 0.97575 0.91550 1.19979 0.96201 0.99252 1.00846 1.20064 0.99966 0.95094 0.91914 1.74495 1.20260 1.15432 1.03004 1.81470 0.92573 1.10251 1.17673 1.50458 1.18105 1.26739 1.23310 1.22462 0.79426 1.05892 0.97416 0.92037 0.95259 0.95215 0.93037 0.92832 0.91849 0.96399 0.89639 0.94446 0.82448 0.81228 0.85332 0.88204 0.87508 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.28 71.98 0.60 -6.99 16 2 C 0.22 10.50 2.34 44.17 0.10 10.60 16 3 H 0.02 0.86 8.03 -2.38 -0.02 0.84 16 4 C -0.51 -27.61 7.94 25.60 0.20 -27.41 16 5 H 0.06 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 9 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.53 -21.59 4.73 -906.03 -4.29 -25.88 16 13 C 0.04 1.48 8.53 127.69 1.09 2.57 16 14 C 0.09 3.04 4.54 85.56 0.39 3.43 16 15 C -0.08 -2.11 4.86 -20.13 -0.10 -2.21 16 16 C -0.05 -1.03 9.61 22.06 0.21 -0.82 16 17 C -0.11 -2.15 10.01 22.11 0.22 -1.93 16 18 C 0.08 1.87 6.94 39.03 0.27 2.14 16 19 C -0.04 -1.13 7.26 39.72 0.29 -0.84 16 20 C -0.05 -1.40 7.87 22.31 0.18 -1.22 16 21 N -0.25 -8.31 12.36 -52.43 -0.65 -8.96 16 22 N -0.04 -1.16 13.73 37.02 0.51 -0.65 16 23 N -0.39 -8.53 4.12 -361.10 -1.49 -10.02 16 24 C 0.09 0.82 11.54 127.77 1.47 2.29 16 25 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 26 H 0.03 1.35 6.38 -2.39 -0.02 1.33 16 27 H 0.03 1.23 6.75 -2.39 -0.02 1.21 16 28 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.05 2.26 6.53 -2.39 -0.02 2.25 16 30 H 0.06 2.21 5.89 -2.39 -0.01 2.20 16 31 H 0.02 0.68 6.28 -2.39 -0.01 0.67 16 32 H 0.09 2.68 7.94 -2.38 -0.02 2.66 16 33 H 0.04 1.24 6.86 -2.39 -0.02 1.22 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 3.77 7.96 -2.91 -0.02 3.75 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -66.52 316.44 2.78 -63.74 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.37 Total: -19.21 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -5.67 Total: -97.15 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.52 2.78 -63.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353418899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.750 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds