Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33852 * 126.08437 * 2 1 4 4 H 0.96997 * 125.01179 * 0.02562 * 3 2 1 5 5 N 1.39925 * 109.98790 * 180.02562 * 3 2 1 6 6 C 1.32034 * 109.07458 * 359.97438 * 5 3 2 7 7 N 1.34238 * 134.42785 * 180.02562 * 6 5 3 8 8 C 1.30846 * 121.18446 * 179.71539 * 7 6 5 9 9 C 1.39455 * 122.61291 * 0.52297 * 8 7 6 10 10 C 1.50702 * 119.66564 * 179.73958 * 9 8 7 11 11 N 1.46898 * 109.47240 * 269.73018 * 10 9 8 12 12 C 1.46901 * 110.99832 * 293.95184 * 11 10 9 13 13 C 1.46902 * 110.99897 * 170.00393 * 11 10 9 14 14 H 1.09001 * 109.47582 * 59.99180 * 13 11 10 15 15 C 1.53006 * 109.46626 * 299.99595 * 13 11 10 16 16 C 1.50698 * 109.46927 * 179.97438 * 13 11 10 17 17 H 1.07993 * 120.00472 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99554 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99716 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99745 * 20 18 16 22 22 H 1.48503 * 109.46926 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47302 * 299.99567 * 20 18 16 24 24 C 1.36279 * 120.66769 * 359.46905 * 9 8 7 25 25 C 1.38259 * 126.08837 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47136 * 269.97101 * 1 2 3 27 27 H 1.08992 * 109.47077 * 29.97440 * 1 2 3 28 28 H 1.09000 * 109.46806 * 149.97615 * 1 2 3 29 29 H 1.07999 * 118.69335 * 180.26273 * 8 7 6 30 30 H 1.09000 * 109.46450 * 149.72890 * 10 9 8 31 31 H 1.09001 * 109.46954 * 29.73085 * 10 9 8 32 32 H 1.09005 * 109.47195 * 296.04632 * 12 11 10 33 33 H 1.08997 * 109.47468 * 56.04810 * 12 11 10 34 34 H 1.08998 * 109.46987 * 176.04874 * 12 11 10 35 35 H 1.09001 * 109.47002 * 179.97438 * 15 13 11 36 36 H 1.08993 * 109.46955 * 300.00347 * 15 13 11 37 37 H 1.09000 * 109.47050 * 60.00176 * 15 13 11 38 38 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.96182 * 180.22950 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2954 1.0817 0.0000 4 1 1.9812 1.9994 0.0004 5 7 3.6398 0.6938 -0.0006 6 6 3.7084 -0.6248 -0.0004 7 7 4.7146 -1.5134 -0.0003 8 6 4.4814 -2.8009 0.0054 9 6 3.1916 -3.3312 0.0011 10 6 2.9997 -4.8259 0.0022 11 7 2.9363 -5.3126 -1.3823 12 6 1.7372 -4.8068 -2.0637 13 6 2.9879 -6.7800 -1.4274 14 1 2.1436 -7.1905 -0.8736 15 6 4.2952 -7.2639 -0.7967 16 6 2.9201 -7.2412 -2.8605 17 1 2.8456 -6.5168 -3.6580 18 6 2.9530 -8.5881 -3.1535 19 7 3.0442 -9.4703 -2.1824 20 14 2.8682 -9.1598 -4.9298 21 1 4.0175 -8.6000 -5.6855 22 1 2.9217 -10.6432 -4.9755 23 1 1.5986 -8.6908 -5.5407 24 6 2.1030 -2.5113 0.0013 25 6 2.3215 -1.1173 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 5.3212 -3.4799 0.0096 30 1 2.0711 -5.0725 0.5170 31 1 3.8366 -5.2992 0.5158 32 1 0.8471 -5.2031 -1.5748 33 1 1.7238 -3.7180 -2.0155 34 1 1.7507 -5.1242 -3.1064 35 1 4.3333 -8.3527 -0.8298 36 1 5.1395 -6.8534 -1.3505 37 1 4.3438 -6.9303 0.2398 38 1 3.0677 -10.4179 -2.3886 39 1 1.1021 -2.9169 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353420622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = 112.157932 kcal Electronic energy + Delta-G solvation = -20810.497802 eV Core-core repulsion = 17755.065885 eV Total energy + Delta-G solvation = -3055.431917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53784 -38.58577 -36.69823 -33.73596 -32.71460 -31.48405 -30.98955 -29.03582 -28.03561 -26.21599 -24.86932 -24.42461 -23.20450 -21.38520 -20.10203 -19.29862 -18.00081 -17.16702 -16.25725 -15.61172 -15.51992 -15.29654 -14.81651 -14.05996 -13.87795 -13.56394 -13.46326 -13.33864 -12.90671 -12.69184 -12.40665 -12.28564 -11.83220 -11.77106 -11.12837 -11.07967 -10.97345 -10.75874 -10.61259 -10.32737 -10.09090 -10.03277 -9.84549 -9.05099 -8.96576 -8.82739 -8.41899 -7.82944 -7.16498 -6.00416 -4.04804 0.46855 1.68959 2.36703 2.41815 3.32959 3.37473 3.40708 3.96381 4.01899 4.16403 4.42687 4.57485 4.84658 5.03981 5.11698 5.16471 5.26456 5.27911 5.33702 5.42873 5.56296 5.71422 6.05059 6.12833 6.20871 6.29786 6.37742 6.53870 6.73863 6.79126 6.87625 6.88855 7.06173 7.15445 7.44129 7.51987 7.72263 7.83796 8.17486 8.20628 8.32760 8.59731 9.01366 9.60225 11.06205 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.003993 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.918995 B = 7010.945646 C = 7348.133821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.124 3.876 3 N -0.419 5.419 4 H 0.442 0.558 5 N -0.300 5.300 6 C 0.270 3.730 7 N -0.484 5.484 8 C 0.222 3.778 9 C -0.155 4.155 10 C 0.093 3.907 11 N -0.532 5.532 12 C 0.036 3.964 13 C 0.213 3.787 14 H -0.001 1.001 15 C -0.135 4.135 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.006 3.994 25 C -0.253 4.253 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.010 0.990 38 H 0.261 0.739 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 16.239 6.328 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 N -0.120 5.120 4 H 0.287 0.713 5 N -0.132 5.132 6 C 0.009 3.991 7 N -0.196 5.196 8 C 0.037 3.963 9 C -0.160 4.160 10 C -0.035 4.035 11 N -0.256 5.256 12 C -0.113 4.113 13 C 0.107 3.893 14 H 0.016 0.984 15 C -0.193 4.193 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.023 4.023 25 C -0.265 4.265 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.184 0.816 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.618 17.825 6.095 19.397 hybrid contribution -2.229 -1.214 -0.605 2.609 sum -6.847 16.612 5.490 18.787 Atomic orbital electron populations 1.20581 0.86150 1.04717 1.04015 1.21198 0.94349 0.87348 0.98858 1.46306 1.04587 1.08590 1.52550 0.71277 1.77725 0.91853 1.10543 1.33048 1.21377 0.89007 0.91377 0.97366 1.67559 1.31865 1.01792 1.18424 1.22973 0.96457 0.89920 0.86946 1.20373 0.93669 0.97467 1.04464 1.21012 1.01112 0.88777 0.92648 1.62156 1.38287 1.13568 1.11634 1.22254 0.90595 0.97661 1.00764 1.19264 0.93737 0.79723 0.96572 0.98370 1.21878 0.98308 1.03931 0.95192 1.21115 1.49857 0.91474 0.91750 0.91938 1.24915 0.95287 0.96729 0.97213 1.69876 1.50733 1.01456 1.31221 0.86599 0.78602 0.77348 0.85076 1.20206 1.21387 1.20416 1.20539 0.99132 0.89526 0.93092 1.20107 0.94579 0.94461 1.17367 0.89375 0.90446 0.88851 0.81597 0.95049 0.89451 0.97099 0.93820 0.90683 0.89638 0.94486 0.97132 0.92943 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.44 36.01 0.38 -0.16 16 2 C 0.12 1.27 7.27 -81.70 -0.59 0.68 16 3 N -0.42 -4.36 7.17 33.83 0.24 -4.12 16 4 H 0.44 2.65 8.96 -182.73 -1.64 1.01 16 5 N -0.30 -4.68 12.69 31.94 0.41 -4.27 16 6 C 0.27 4.58 8.61 -156.49 -1.35 3.23 16 7 N -0.48 -8.53 10.45 -11.34 -0.12 -8.65 16 8 C 0.22 3.52 10.74 -17.52 -0.19 3.33 16 9 C -0.16 -2.41 4.88 -104.87 -0.51 -2.92 16 10 C 0.09 1.58 4.92 -4.98 -0.02 1.56 16 11 N -0.53 -10.94 4.61 -237.72 -1.10 -12.03 16 12 C 0.04 0.68 8.88 60.07 0.53 1.21 16 13 C 0.21 5.17 2.06 -68.86 -0.14 5.03 16 14 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 15 C -0.14 -3.16 8.77 37.16 0.33 -2.83 16 16 C -0.50 -13.45 7.93 -34.44 -0.27 -13.73 16 17 H 0.06 1.68 6.39 -52.49 -0.34 1.34 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -24.97 11.32 55.43 0.63 -24.35 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.01 0.09 7.99 -39.20 -0.31 -0.23 16 25 C -0.25 -3.57 6.27 -105.17 -0.66 -4.23 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.09 1.46 5.77 -51.93 -0.30 1.16 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.73 5.88 -51.93 -0.31 0.43 16 34 H 0.07 1.55 6.23 -51.93 -0.32 1.23 16 35 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.13 1.54 7.97 -52.49 -0.42 1.12 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -32.70 317.92 -9.55 -42.25 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.47 Total: -2.14 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.91 Total: -7.53 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.06 Total: -53.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.70 -9.55 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353420622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.410 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds