Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33852 * 126.08437 * 2 1 4 4 H 0.96997 * 125.01179 * 0.02562 * 3 2 1 5 5 N 1.39925 * 109.98790 * 180.02562 * 3 2 1 6 6 C 1.32034 * 109.07458 * 359.97438 * 5 3 2 7 7 N 1.34238 * 134.42785 * 180.02562 * 6 5 3 8 8 C 1.30846 * 121.18446 * 179.71539 * 7 6 5 9 9 C 1.39455 * 122.61291 * 0.52297 * 8 7 6 10 10 C 1.50702 * 119.66564 * 179.73958 * 9 8 7 11 11 N 1.46898 * 109.47240 * 269.73018 * 10 9 8 12 12 C 1.46901 * 110.99832 * 293.95184 * 11 10 9 13 13 C 1.46902 * 110.99897 * 170.00393 * 11 10 9 14 14 H 1.09001 * 109.47582 * 59.99180 * 13 11 10 15 15 C 1.53006 * 109.46626 * 299.99595 * 13 11 10 16 16 C 1.50698 * 109.46927 * 179.97438 * 13 11 10 17 17 H 1.07993 * 120.00472 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99554 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99716 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99745 * 20 18 16 22 22 H 1.48503 * 109.46926 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47302 * 299.99567 * 20 18 16 24 24 C 1.36279 * 120.66769 * 359.46905 * 9 8 7 25 25 C 1.38259 * 126.08837 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47136 * 269.97101 * 1 2 3 27 27 H 1.08992 * 109.47077 * 29.97440 * 1 2 3 28 28 H 1.09000 * 109.46806 * 149.97615 * 1 2 3 29 29 H 1.07999 * 118.69335 * 180.26273 * 8 7 6 30 30 H 1.09000 * 109.46450 * 149.72890 * 10 9 8 31 31 H 1.09001 * 109.46954 * 29.73085 * 10 9 8 32 32 H 1.09005 * 109.47195 * 296.04632 * 12 11 10 33 33 H 1.08997 * 109.47468 * 56.04810 * 12 11 10 34 34 H 1.08998 * 109.46987 * 176.04874 * 12 11 10 35 35 H 1.09001 * 109.47002 * 179.97438 * 15 13 11 36 36 H 1.08993 * 109.46955 * 300.00347 * 15 13 11 37 37 H 1.09000 * 109.47050 * 60.00176 * 15 13 11 38 38 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.96182 * 180.22950 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2954 1.0817 0.0000 4 1 1.9812 1.9994 0.0004 5 7 3.6398 0.6938 -0.0006 6 6 3.7084 -0.6248 -0.0004 7 7 4.7146 -1.5134 -0.0003 8 6 4.4814 -2.8009 0.0054 9 6 3.1916 -3.3312 0.0011 10 6 2.9997 -4.8259 0.0022 11 7 2.9363 -5.3126 -1.3823 12 6 1.7372 -4.8068 -2.0637 13 6 2.9879 -6.7800 -1.4274 14 1 2.1436 -7.1905 -0.8736 15 6 4.2952 -7.2639 -0.7967 16 6 2.9201 -7.2412 -2.8605 17 1 2.8456 -6.5168 -3.6580 18 6 2.9530 -8.5881 -3.1535 19 7 3.0442 -9.4703 -2.1824 20 14 2.8682 -9.1598 -4.9298 21 1 4.0175 -8.6000 -5.6855 22 1 2.9217 -10.6432 -4.9755 23 1 1.5986 -8.6908 -5.5407 24 6 2.1030 -2.5113 0.0013 25 6 2.3215 -1.1173 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 5.3212 -3.4799 0.0096 30 1 2.0711 -5.0725 0.5170 31 1 3.8366 -5.2992 0.5158 32 1 0.8471 -5.2031 -1.5748 33 1 1.7238 -3.7180 -2.0155 34 1 1.7507 -5.1242 -3.1064 35 1 4.3333 -8.3527 -0.8298 36 1 5.1395 -6.8534 -1.3505 37 1 4.3438 -6.9303 0.2398 38 1 3.0677 -10.4179 -2.3886 39 1 1.1021 -2.9169 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353420622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 89.763732 kcal Electronic energy + Delta-G solvation = -20811.468887 eV Core-core repulsion = 17755.065885 eV Total energy + Delta-G solvation = -3056.403002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54730 -39.80080 -38.21196 -35.17724 -34.17166 -32.56608 -32.14703 -30.78803 -29.10499 -27.58347 -26.39947 -25.72092 -24.71252 -22.66753 -21.35410 -20.77310 -18.98308 -18.42748 -17.99906 -17.11046 -16.54431 -16.46366 -16.19070 -15.74510 -15.41870 -14.96278 -14.30124 -14.20914 -14.14727 -13.99974 -13.61517 -13.35855 -13.22762 -13.01255 -12.88904 -12.71218 -12.58726 -12.31436 -12.10754 -12.00443 -11.89040 -11.58368 -11.42257 -10.82984 -10.45429 -10.13766 -10.01748 -8.97734 -8.75224 -8.05489 -6.16463 -0.52094 0.56290 1.33805 1.45478 1.47408 1.54379 1.60229 2.46415 2.82423 2.96679 3.22959 3.32887 3.63466 3.80405 3.97728 4.06231 4.08512 4.31199 4.47646 4.62474 4.71441 4.75190 4.80829 4.83269 4.91586 5.06613 5.08611 5.12978 5.16399 5.23090 5.33820 5.39242 5.59656 5.67834 5.79287 5.88544 6.15979 6.34677 6.40048 6.47603 6.81673 6.98533 7.05582 7.52453 8.99605 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.003993 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.918995 B = 7010.945646 C = 7348.133821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.162 3.838 3 N -0.400 5.400 4 H 0.462 0.538 5 N -0.344 5.344 6 C 0.242 3.758 7 N -0.520 5.520 8 C 0.215 3.785 9 C -0.177 4.177 10 C 0.102 3.898 11 N -0.542 5.542 12 C 0.042 3.958 13 C 0.218 3.782 14 H -0.031 1.031 15 C -0.124 4.124 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.028 3.972 25 C -0.284 4.284 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.172 0.828 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 18.011 6.249 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.019 3.981 3 N -0.104 5.104 4 H 0.311 0.689 5 N -0.177 5.177 6 C -0.019 4.019 7 N -0.234 5.234 8 C 0.033 3.967 9 C -0.182 4.182 10 C -0.026 4.026 11 N -0.266 5.266 12 C -0.106 4.106 13 C 0.111 3.889 14 H -0.014 1.014 15 C -0.183 4.183 16 C -0.556 4.556 17 H 0.075 0.925 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.001 4.001 25 C -0.295 4.295 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.189 0.811 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.877 19.636 6.021 21.659 hybrid contribution -1.656 -1.574 -0.529 2.346 sum -8.533 18.062 5.491 20.717 Atomic orbital electron populations 1.20882 0.81947 1.06632 1.06021 1.21939 0.96303 0.85773 0.94124 1.46331 1.03254 1.09929 1.50839 0.68872 1.77627 0.94624 1.10291 1.35134 1.21644 0.90296 0.91951 0.97972 1.67476 1.33222 1.02473 1.20218 1.23073 0.97116 0.89731 0.86821 1.20119 0.94115 0.96390 1.07570 1.20916 1.01352 0.89847 0.90459 1.62053 1.39253 1.11085 1.14237 1.22184 0.90161 0.98975 0.99293 1.19042 0.92796 0.82106 0.94963 1.01363 1.21699 0.97700 1.02024 0.96832 1.21414 1.49599 0.91661 0.92936 0.92532 1.25631 0.95118 0.96932 1.00792 1.70001 1.51454 1.01552 1.32872 0.85672 0.78672 0.76867 0.80757 1.20100 1.21068 1.19690 1.20785 0.99686 0.89465 0.90151 1.20369 0.94120 0.95477 1.19573 0.87001 0.87351 0.88146 0.81094 0.94286 0.89653 0.96698 0.91396 0.92842 0.92306 0.95043 0.94408 0.93024 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.44 71.24 0.74 0.19 16 2 C 0.16 2.75 7.27 42.26 0.31 3.06 16 3 N -0.40 -7.25 7.17 -46.87 -0.34 -7.58 16 4 H 0.46 3.99 8.96 -213.44 -1.91 2.07 16 5 N -0.34 -10.47 12.69 -52.87 -0.67 -11.14 16 6 C 0.24 8.14 8.61 136.87 1.18 9.31 16 7 N -0.52 -18.74 10.45 -189.80 -1.98 -20.72 16 8 C 0.22 6.93 10.74 85.13 0.91 7.85 16 9 C -0.18 -5.34 4.88 -20.03 -0.10 -5.44 16 10 C 0.10 3.40 4.92 85.56 0.42 3.82 16 11 N -0.54 -22.14 4.61 -906.02 -4.18 -26.32 16 12 C 0.04 1.56 8.88 127.69 1.13 2.70 16 13 C 0.22 10.71 2.06 44.17 0.09 10.80 16 14 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 15 C -0.12 -5.89 8.77 71.98 0.63 -5.26 16 16 C -0.52 -27.99 7.93 25.60 0.20 -27.79 16 17 H 0.06 3.06 6.39 -2.91 -0.02 3.04 16 18 C 0.01 0.76 5.30 84.66 0.45 1.21 16 19 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 20 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.03 0.72 7.99 22.52 0.18 0.90 16 25 C -0.28 -7.40 6.27 -20.22 -0.13 -7.53 16 26 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 27 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.17 4.99 8.06 -2.91 -0.02 4.97 16 30 H 0.04 1.24 8.05 -2.39 -0.02 1.22 16 31 H 0.09 2.82 5.77 -2.39 -0.01 2.81 16 32 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.07 2.15 5.88 -2.39 -0.01 2.14 16 34 H 0.05 2.19 6.23 -2.39 -0.01 2.18 16 35 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.53 6.20 -2.39 -0.01 1.52 16 38 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.15 3.10 7.97 -2.91 -0.02 3.07 16 Total: -1.00 -73.08 317.92 0.29 -72.79 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -0.84 Total: 5.63 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 6.03 Total: -6.18 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -6.93 Total: -117.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -73.08 0.29 -72.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353420622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.553 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds