Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00205 * 2 1 4 4 C 1.53005 * 109.47366 * 66.04535 * 3 2 1 5 5 C 1.50697 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.38389 * 120.00343 * 124.99965 * 5 4 3 7 7 N 1.32124 * 120.00068 * 179.97438 * 6 5 4 8 8 C 1.32152 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.38343 * 120.00797 * 0.02562 * 8 7 6 10 10 N 1.32123 * 119.99830 * 304.71923 * 5 4 3 11 11 C 1.46905 * 111.00051 * 236.04498 * 2 1 3 12 12 C 1.52998 * 109.47055 * 196.07401 * 11 2 1 13 13 H 1.09010 * 109.46964 * 304.23531 * 12 11 2 14 14 C 1.47199 * 109.47354 * 64.23883 * 12 11 2 15 15 N 3.65384 * 127.58320 * 155.89898 * 2 1 3 16 16 C 1.53002 * 109.47239 * 184.24244 * 12 11 2 17 17 C 1.50694 * 109.47174 * 174.99917 * 16 12 11 18 18 H 1.07999 * 120.00506 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99890 * 180.02562 * 17 16 12 20 20 N 1.31518 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00018 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47251 * 59.99791 * 21 19 17 23 23 H 1.48499 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46745 * 299.99436 * 21 19 17 25 25 H 1.08996 * 109.47356 * 178.68589 * 1 2 3 26 26 H 1.09000 * 109.47220 * 298.68887 * 1 2 3 27 27 H 1.09003 * 109.47228 * 58.68754 * 1 2 3 28 28 H 1.09000 * 109.47689 * 186.04692 * 3 2 1 29 29 H 1.09003 * 109.47464 * 306.04742 * 3 2 1 30 30 H 1.08999 * 109.46741 * 300.00128 * 4 3 2 31 31 H 1.08994 * 109.46707 * 59.99984 * 4 3 2 32 32 H 1.08000 * 119.99818 * 359.95305 * 6 5 4 33 33 H 1.08001 * 120.00103 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.00210 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.46764 * 316.07222 * 11 2 1 36 36 H 1.09000 * 109.46672 * 76.07129 * 11 2 1 37 37 H 1.09000 * 109.46793 * 295.00008 * 16 12 11 38 38 H 1.08999 * 109.47061 * 54.99591 * 16 12 11 39 39 H 0.96998 * 120.00057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1710 3.4645 1.3180 6 6 1.3206 4.5318 1.5477 7 7 1.7938 5.7654 1.5479 8 6 3.0794 5.9800 1.3294 9 6 3.9296 4.9131 1.0998 10 7 3.4571 3.6788 1.1040 11 6 1.9954 -0.7660 -1.1376 12 6 3.4722 -1.0858 -0.8974 13 1 4.0201 -0.1603 -0.7194 14 6 3.5994 -1.9648 0.2765 15 7 3.6975 -2.6431 1.1824 16 6 4.0480 -1.7907 -2.1272 17 6 5.5293 -1.9957 -1.9412 18 1 6.0120 -1.6567 -1.0365 19 6 6.2687 -2.6151 -2.9264 20 7 5.6811 -3.0275 -4.0284 21 14 8.1048 -2.8698 -2.6955 22 1 8.3410 -3.7054 -1.4908 23 1 8.6636 -3.5539 -3.8892 24 1 8.7693 -1.5530 -2.5227 25 1 -0.3634 -1.0273 -0.0236 26 1 -0.3634 0.4933 0.9015 27 1 -0.3634 0.5341 -0.8780 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0845 1.4265 31 1 2.0658 1.5015 2.1491 32 1 0.2700 4.3564 1.7263 33 1 3.4663 6.9883 1.3300 34 1 4.9802 5.0885 0.9216 35 1 1.4347 -1.6950 -1.2407 36 1 1.8947 -0.1776 -2.0496 37 1 3.5605 -2.7574 -2.2533 38 1 3.8742 -1.1780 -3.0118 39 1 6.2012 -3.4636 -4.7213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357040821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = 66.676582 kcal Electronic energy + Delta-G solvation = -20147.079577 eV Core-core repulsion = 17089.675441 eV Total energy + Delta-G solvation = -3057.404136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28499 -38.27665 -35.88825 -34.66959 -33.67615 -33.09745 -31.61451 -29.48144 -27.44040 -25.83064 -24.77100 -24.17621 -22.35266 -21.69352 -20.77223 -17.78534 -17.20152 -16.81425 -16.50289 -16.11095 -15.38774 -15.11423 -14.71941 -14.65541 -14.28793 -13.68202 -13.55981 -13.10173 -12.65946 -12.58472 -12.27990 -12.18017 -11.90373 -11.80168 -11.62035 -11.48607 -11.28760 -11.14848 -11.02895 -10.96822 -10.61459 -10.51838 -10.08866 -9.51693 -9.42379 -9.24408 -9.20015 -8.42969 -8.23241 -6.07149 -4.09990 0.54540 0.92923 3.33245 3.37136 3.41244 3.46321 3.74622 3.80002 3.89586 4.01366 4.04748 4.29662 4.43653 4.62385 4.82837 4.95234 5.05902 5.13266 5.16201 5.23482 5.29784 5.31036 5.45893 5.50728 5.68801 5.75237 5.89395 5.95152 6.02997 6.08051 6.17754 6.40055 6.54491 7.06034 7.14054 7.15587 7.44974 7.55650 7.57981 7.88321 8.26257 8.64492 8.94645 9.55296 11.03802 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.004088 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.173408 B = 6847.181339 C = 7820.334810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.060 3.940 4 C -0.065 4.065 5 C 0.091 3.909 6 C 0.048 3.952 7 N -0.439 5.439 8 C 0.035 3.965 9 C 0.058 3.942 10 N -0.430 5.430 11 C 0.063 3.937 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.259 3.741 15 N -0.482 5.482 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.036 0.964 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 16.495 7.088 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.068 4.068 4 C -0.104 4.104 5 C -0.050 4.050 6 C -0.112 4.112 7 N -0.153 5.153 8 C -0.124 4.124 9 C -0.102 4.102 10 N -0.145 5.145 11 C -0.065 4.065 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.058 4.058 15 N -0.159 5.159 16 C -0.007 4.007 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.024 15.156 8.720 20.155 hybrid contribution 0.841 0.563 -1.077 1.477 sum -9.183 15.719 7.643 19.745 Atomic orbital electron populations 1.22422 0.87716 1.02102 1.00345 1.61991 1.07514 1.13163 1.44289 1.22090 1.02139 0.87823 0.94775 1.20555 1.00609 0.88800 1.00420 1.22349 0.90222 0.97807 0.94647 1.23619 1.01582 0.88371 0.97649 1.68426 1.14762 1.23184 1.08923 1.23747 0.90060 1.01260 0.97341 1.23862 1.02058 0.88606 0.95641 1.68354 1.13999 1.23333 1.08863 1.22242 0.95102 0.98080 0.91125 1.19244 0.95099 0.96428 0.90423 0.88183 1.28822 0.91160 0.92798 0.93018 1.80971 1.10471 1.11433 1.13013 1.19164 0.95899 0.95923 0.89711 1.21111 0.92910 1.38972 1.03341 0.92522 1.24944 0.98574 0.95269 0.95120 1.69930 1.36112 1.39814 1.07308 0.86662 0.85345 0.78543 0.77588 1.20200 1.21217 1.20048 0.91368 0.91516 0.95642 0.88867 0.94829 0.89895 0.88540 0.81568 0.81483 0.81206 0.90153 0.92751 0.95599 0.94549 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.28 60.06 0.56 0.79 16 2 N -0.55 -7.14 4.40 -242.92 -1.07 -8.21 16 3 C 0.06 0.72 4.67 -3.82 -0.02 0.70 16 4 C -0.07 -0.66 5.55 -27.88 -0.15 -0.81 16 5 C 0.09 0.97 6.17 -82.41 -0.51 0.46 16 6 C 0.05 0.45 10.85 -17.37 -0.19 0.27 16 7 N -0.44 -4.53 10.50 -13.06 -0.14 -4.67 16 8 C 0.04 0.30 11.22 -17.38 -0.20 0.11 16 9 C 0.06 0.54 11.23 -17.37 -0.19 0.35 16 10 N -0.43 -5.16 10.06 -9.29 -0.09 -5.25 16 11 C 0.06 0.94 4.35 -3.82 -0.02 0.92 16 12 C 0.01 0.19 2.23 -93.41 -0.21 -0.02 16 13 H 0.10 1.82 6.48 -51.92 -0.34 1.49 16 14 C 0.26 5.50 13.65 -20.76 -0.28 5.22 16 15 N -0.48 -11.10 18.54 42.15 0.78 -10.31 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.53 -14.14 8.60 -34.44 -0.30 -14.43 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 26 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 27 H 0.03 0.24 8.13 -51.93 -0.42 -0.18 16 28 H 0.09 1.30 6.18 -51.93 -0.32 0.98 16 29 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.08 0.64 6.32 -51.93 -0.33 0.31 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.17 1.10 7.95 -52.49 -0.42 0.69 16 33 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 36 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -32.58 335.37 -6.95 -39.53 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.47 Total: -3.45 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.73 Total: -4.18 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.22 Total: -53.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.58 -6.95 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357040821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.205 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds