Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00205 * 2 1 4 4 C 1.53005 * 109.47366 * 66.04535 * 3 2 1 5 5 C 1.50697 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.38389 * 120.00343 * 124.99965 * 5 4 3 7 7 N 1.32124 * 120.00068 * 179.97438 * 6 5 4 8 8 C 1.32152 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.38343 * 120.00797 * 0.02562 * 8 7 6 10 10 N 1.32123 * 119.99830 * 304.71923 * 5 4 3 11 11 C 1.46905 * 111.00051 * 236.04498 * 2 1 3 12 12 C 1.52998 * 109.47055 * 196.07401 * 11 2 1 13 13 H 1.09010 * 109.46964 * 304.23531 * 12 11 2 14 14 C 1.47199 * 109.47354 * 64.23883 * 12 11 2 15 15 N 3.65384 * 127.58320 * 155.89898 * 2 1 3 16 16 C 1.53002 * 109.47239 * 184.24244 * 12 11 2 17 17 C 1.50694 * 109.47174 * 174.99917 * 16 12 11 18 18 H 1.07999 * 120.00506 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99890 * 180.02562 * 17 16 12 20 20 N 1.31518 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00018 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47251 * 59.99791 * 21 19 17 23 23 H 1.48499 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46745 * 299.99436 * 21 19 17 25 25 H 1.08996 * 109.47356 * 178.68589 * 1 2 3 26 26 H 1.09000 * 109.47220 * 298.68887 * 1 2 3 27 27 H 1.09003 * 109.47228 * 58.68754 * 1 2 3 28 28 H 1.09000 * 109.47689 * 186.04692 * 3 2 1 29 29 H 1.09003 * 109.47464 * 306.04742 * 3 2 1 30 30 H 1.08999 * 109.46741 * 300.00128 * 4 3 2 31 31 H 1.08994 * 109.46707 * 59.99984 * 4 3 2 32 32 H 1.08000 * 119.99818 * 359.95305 * 6 5 4 33 33 H 1.08001 * 120.00103 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.00210 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.46764 * 316.07222 * 11 2 1 36 36 H 1.09000 * 109.46672 * 76.07129 * 11 2 1 37 37 H 1.09000 * 109.46793 * 295.00008 * 16 12 11 38 38 H 1.08999 * 109.47061 * 54.99591 * 16 12 11 39 39 H 0.96998 * 120.00057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1710 3.4645 1.3180 6 6 1.3206 4.5318 1.5477 7 7 1.7938 5.7654 1.5479 8 6 3.0794 5.9800 1.3294 9 6 3.9296 4.9131 1.0998 10 7 3.4571 3.6788 1.1040 11 6 1.9954 -0.7660 -1.1376 12 6 3.4722 -1.0858 -0.8974 13 1 4.0201 -0.1603 -0.7194 14 6 3.5994 -1.9648 0.2765 15 7 3.6975 -2.6431 1.1824 16 6 4.0480 -1.7907 -2.1272 17 6 5.5293 -1.9957 -1.9412 18 1 6.0120 -1.6567 -1.0365 19 6 6.2687 -2.6151 -2.9264 20 7 5.6811 -3.0275 -4.0284 21 14 8.1048 -2.8698 -2.6955 22 1 8.3410 -3.7054 -1.4908 23 1 8.6636 -3.5539 -3.8892 24 1 8.7693 -1.5530 -2.5227 25 1 -0.3634 -1.0273 -0.0236 26 1 -0.3634 0.4933 0.9015 27 1 -0.3634 0.5341 -0.8780 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0845 1.4265 31 1 2.0658 1.5015 2.1491 32 1 0.2700 4.3564 1.7263 33 1 3.4663 6.9883 1.3300 34 1 4.9802 5.0885 0.9216 35 1 1.4347 -1.6950 -1.2407 36 1 1.8947 -0.1776 -2.0496 37 1 3.5605 -2.7574 -2.2533 38 1 3.8742 -1.1780 -3.0118 39 1 6.2012 -3.4636 -4.7213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357040821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = 45.071464 kcal Electronic energy + Delta-G solvation = -20148.016445 eV Core-core repulsion = 17089.675441 eV Total energy + Delta-G solvation = -3058.341005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.99143 -39.45935 -37.39240 -35.65670 -35.31861 -34.14038 -33.22057 -30.33536 -28.95667 -26.87833 -25.72989 -25.24840 -23.63301 -23.22792 -21.73964 -18.59623 -18.47902 -18.19667 -17.83071 -17.05413 -16.70767 -16.15564 -16.00366 -15.79540 -15.40875 -14.78745 -14.66510 -14.40999 -14.16126 -13.80143 -13.72783 -13.33894 -13.08671 -13.07484 -12.96082 -12.64612 -12.63348 -12.50312 -12.41473 -12.34952 -12.07247 -12.01626 -11.60592 -11.35584 -11.09360 -10.54650 -10.12479 -9.95247 -9.22418 -8.19245 -6.27511 -0.13474 0.20618 1.40784 1.42616 1.49809 2.08344 2.15676 2.41770 2.74187 2.92451 3.16008 3.24988 3.37229 3.42205 3.59163 3.91770 4.07125 4.16503 4.22172 4.38327 4.41479 4.48504 4.56522 4.64198 4.70734 4.75310 4.81994 4.83704 4.98619 5.11762 5.14944 5.20789 5.45880 5.49518 5.61443 5.79065 6.06073 6.20311 6.23976 6.37812 6.83099 6.88448 6.94563 7.40895 8.91539 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.004088 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.173408 B = 6847.181339 C = 7820.334810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.558 5.558 3 C 0.064 3.936 4 C -0.056 4.056 5 C 0.076 3.924 6 C 0.049 3.951 7 N -0.460 5.460 8 C 0.040 3.960 9 C 0.048 3.952 10 N -0.467 5.467 11 C 0.073 3.927 12 C 0.021 3.979 13 H 0.108 0.892 14 C 0.269 3.731 15 N -0.514 5.514 16 C 0.039 3.961 17 C -0.541 4.541 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.947 3.053 22 H -0.281 1.281 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.192 0.808 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.003 0.997 38 H 0.033 0.967 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 18.107 7.483 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.283 5.283 3 C -0.064 4.064 4 C -0.095 4.095 5 C -0.065 4.065 6 C -0.110 4.110 7 N -0.175 5.175 8 C -0.119 4.119 9 C -0.111 4.111 10 N -0.183 5.183 11 C -0.056 4.056 12 C -0.001 4.001 13 H 0.126 0.874 14 C -0.047 4.047 15 N -0.192 5.192 16 C 0.000 4.000 17 C -0.579 4.579 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.206 1.206 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.210 0.790 33 H 0.216 0.784 34 H 0.209 0.791 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.022 0.978 38 H 0.051 0.949 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.660 16.779 9.124 21.873 hybrid contribution 1.039 0.114 -1.188 1.583 sum -9.620 16.893 7.935 20.998 Atomic orbital electron populations 1.22499 0.85557 1.02543 1.01969 1.61930 1.09467 1.13630 1.43233 1.22015 1.00616 0.87496 0.96251 1.20481 1.02167 0.88266 0.98538 1.22430 0.90184 0.98245 0.95632 1.23986 1.02626 0.87805 0.96626 1.68500 1.15649 1.23563 1.09770 1.24257 0.89487 1.02512 0.95622 1.24284 1.03330 0.88096 0.95439 1.68306 1.15062 1.24954 1.09953 1.22056 0.92224 0.98855 0.92504 1.19171 0.98009 0.95466 0.87458 0.87418 1.29267 0.90109 0.92328 0.93000 1.80964 1.11739 1.12332 1.14123 1.18979 0.94238 0.95167 0.91608 1.21511 0.94833 1.38538 1.02982 0.93037 1.25694 1.02614 0.95246 0.95013 1.70022 1.37573 1.40677 1.08015 0.85768 0.80798 0.78803 0.77347 1.20645 1.20528 1.18827 0.91578 0.89471 0.94366 0.91360 0.94099 0.87097 0.90147 0.78984 0.78370 0.79095 0.90098 0.91486 0.97839 0.94882 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.28 127.69 1.18 1.58 16 2 N -0.56 -13.79 4.40 -922.46 -4.06 -17.84 16 3 C 0.06 1.47 4.67 86.31 0.40 1.87 16 4 C -0.06 -1.05 5.55 29.85 0.17 -0.88 16 5 C 0.08 1.52 6.17 42.55 0.26 1.78 16 6 C 0.05 0.83 10.85 84.68 0.92 1.75 16 7 N -0.46 -8.62 10.50 -195.23 -2.05 -10.67 16 8 C 0.04 0.61 11.22 84.67 0.95 1.56 16 9 C 0.05 0.84 11.23 84.67 0.95 1.79 16 10 N -0.47 -10.90 10.06 -183.30 -1.84 -12.75 16 11 C 0.07 2.10 4.35 86.30 0.38 2.48 16 12 C 0.02 0.78 2.23 -12.60 -0.03 0.76 16 13 H 0.11 3.93 6.48 -2.38 -0.02 3.91 16 14 C 0.27 11.47 13.65 89.44 1.22 12.69 16 15 N -0.51 -23.77 18.54 20.01 0.37 -23.40 16 16 C 0.04 1.84 4.42 29.85 0.13 1.97 16 17 C -0.54 -29.31 8.60 25.60 0.22 -29.09 16 18 H 0.05 2.79 7.59 -2.91 -0.02 2.76 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 21 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 25 H 0.07 1.23 7.97 -2.39 -0.02 1.21 16 26 H 0.09 1.22 6.53 -2.39 -0.02 1.20 16 27 H 0.04 0.60 8.13 -2.39 -0.02 0.58 16 28 H 0.07 1.90 6.18 -2.39 -0.01 1.88 16 29 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.11 1.38 6.32 -2.39 -0.02 1.37 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.19 2.01 7.95 -2.91 -0.02 1.99 16 33 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.08 2.33 7.88 -2.39 -0.02 2.31 16 36 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.92 335.37 2.99 -66.93 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.04 Total: 5.45 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 7.22 Total: -0.53 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -7.29 Total: -117.84 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.92 2.99 -66.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357040821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.001 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds