Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46894 * 2 1 4 4 H 1.09005 * 109.46837 * 54.54814 * 3 2 1 5 5 C 1.50698 * 109.47047 * 174.54310 * 3 2 1 6 6 H 1.08003 * 119.99903 * 120.00268 * 5 3 2 7 7 C 1.37880 * 120.00237 * 300.00260 * 5 3 2 8 8 N 1.31509 * 119.99859 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47236 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47267 * 120.00352 * 9 7 5 12 12 H 1.48499 * 109.47120 * 240.00263 * 9 7 5 13 13 N 1.46896 * 109.47728 * 294.54689 * 3 2 1 14 14 C 1.46895 * 111.00444 * 154.44152 * 13 3 2 15 15 C 1.50697 * 109.47475 * 174.76573 * 14 13 3 16 16 C 1.38898 * 119.62751 * 89.99792 * 15 14 13 17 17 C 1.36660 * 120.58565 * 179.97438 * 16 15 14 18 18 C 1.39079 * 119.80528 * 0.02562 * 17 16 15 19 19 C 1.40570 * 119.89436 * 359.97438 * 18 17 16 20 20 C 1.36411 * 119.62107 * 269.73065 * 15 14 13 21 21 N 1.34785 * 107.67611 * 179.97438 * 19 18 17 22 22 N 1.28646 * 110.31949 * 0.02562 * 21 19 18 23 23 N 1.37464 * 134.01295 * 179.97438 * 18 17 16 24 24 C 1.46495 * 126.76036 * 0.02562 * 23 18 17 25 25 H 1.08997 * 109.47041 * 305.90692 * 1 2 3 26 26 H 1.08996 * 109.47072 * 65.91265 * 1 2 3 27 27 H 1.09003 * 109.47102 * 185.91016 * 1 2 3 28 28 H 1.08999 * 109.47014 * 240.00645 * 2 1 3 29 29 H 1.08996 * 109.47583 * 120.00141 * 2 1 3 30 30 H 0.97004 * 119.99986 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99440 * 30.48594 * 13 3 2 32 32 H 1.08999 * 109.47133 * 294.76647 * 14 13 3 33 33 H 1.08997 * 109.47058 * 54.76236 * 14 13 3 34 34 H 1.08005 * 119.70990 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.10053 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.10275 * 359.97438 * 20 15 14 37 37 H 1.08998 * 109.47009 * 90.00356 * 24 23 18 38 38 H 1.09003 * 109.47497 * 210.00056 * 24 23 18 39 39 H 1.08999 * 109.47095 * 330.00363 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5990 1.9837 0.8372 5 6 3.5408 1.4447 0.1351 6 1 4.1519 1.8873 -0.6376 7 6 4.1340 0.8817 1.2452 8 7 3.3899 0.3424 2.1859 9 14 5.9944 0.8838 1.4123 10 1 6.5971 1.5460 0.2275 11 1 6.3803 1.6226 2.6413 12 1 6.4850 -0.5150 1.5011 13 7 1.6607 2.0961 -1.2597 14 6 1.5677 3.5522 -1.0903 15 6 1.3042 4.1977 -2.4262 16 6 -0.0046 4.3941 -2.8478 17 6 -0.2660 4.9780 -4.0554 18 6 0.7863 5.3795 -4.8714 19 6 2.1132 5.1836 -4.4507 20 6 2.3539 4.5875 -3.2054 21 7 2.9234 5.6565 -5.4185 22 7 2.2278 6.1251 -6.3940 23 7 0.8626 5.9781 -6.1065 24 6 -0.2606 6.3831 -6.9553 25 1 -0.3633 0.6027 0.8324 26 1 -0.3633 0.4194 -0.9381 27 1 -0.3633 -1.0222 0.1058 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8072 -0.0541 2.9667 31 1 0.7964 1.7177 -1.6174 32 1 0.7523 3.7871 -0.4062 33 1 2.5047 3.9311 -0.6822 34 1 -0.8230 4.0826 -2.2156 35 1 -1.2866 5.1273 -4.3752 36 1 3.3674 4.4341 -2.8653 37 1 -0.5442 7.4084 -6.7179 38 1 0.0346 6.3211 -8.0027 39 1 -1.1080 5.7212 -6.7769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358284647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = 88.209545 kcal Electronic energy + Delta-G solvation = -20463.341774 eV Core-core repulsion = 17406.871377 eV Total energy + Delta-G solvation = -3056.470397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06364 -39.35990 -37.69569 -35.66983 -34.50680 -33.20524 -31.56826 -30.99495 -28.68081 -28.23870 -26.17819 -24.69351 -24.23694 -22.38127 -22.13385 -21.39497 -18.52094 -18.34329 -18.09273 -17.08779 -16.92628 -16.69258 -15.83015 -15.62575 -15.14944 -15.08182 -14.48613 -14.40569 -14.02669 -13.94644 -13.73294 -13.43974 -13.19121 -12.98991 -12.86110 -12.75021 -12.67191 -12.52778 -12.38114 -11.94960 -11.71456 -11.58573 -11.48955 -11.33519 -10.98943 -10.39488 -9.81384 -9.21473 -8.92484 -8.03930 -6.14709 -0.51500 0.32344 1.20424 1.21035 1.40679 1.43983 1.55288 2.46063 2.62957 3.08156 3.21581 3.50649 3.62239 3.78887 3.99499 4.19141 4.25392 4.38850 4.39992 4.50743 4.57707 4.64047 4.65721 4.75494 4.80847 4.93531 4.99150 5.06013 5.15887 5.28005 5.30495 5.43186 5.58074 5.63649 5.67144 5.78603 5.82680 5.95483 6.40554 6.55133 6.96387 6.99550 7.07268 7.54359 8.98829 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.004134 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.348585 B = 6771.091120 C = 7694.094748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.023 1.023 5 C -0.510 4.510 6 H 0.046 0.954 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.684 5.684 14 C 0.110 3.890 15 C -0.080 4.080 16 C -0.053 4.053 17 C -0.107 4.107 18 C 0.077 3.923 19 C -0.039 4.039 20 C -0.040 4.040 21 N -0.258 5.258 22 N -0.041 5.041 23 N -0.389 5.389 24 C 0.087 3.913 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 9.944 -13.418 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.316 5.316 14 C -0.019 4.019 15 C -0.084 4.084 16 C -0.075 4.075 17 C -0.129 4.129 18 C -0.046 4.046 19 C -0.164 4.164 20 C -0.063 4.063 21 N -0.135 5.135 22 N -0.021 5.021 23 N -0.185 5.185 24 C -0.052 4.052 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.732 10.430 -14.616 22.012 hybrid contribution 0.092 -0.373 1.476 1.525 sum -12.640 10.057 -13.140 20.823 Atomic orbital electron populations 1.21743 0.95903 1.01121 1.00816 1.21593 0.94553 0.98901 1.01033 1.18930 0.93752 0.90735 0.84809 1.00536 1.21532 0.93158 1.36231 1.03958 0.93527 1.25589 1.01751 0.95497 0.95731 1.69987 1.35897 1.39997 1.09914 0.85650 0.81513 0.77615 0.77695 1.19946 1.20696 1.20701 1.60540 1.37359 1.02525 1.31212 1.20689 1.00531 0.88781 0.91880 1.19475 0.93337 0.98933 0.96622 1.21106 0.96134 0.94849 0.95445 1.20141 0.97870 1.01686 0.93189 1.19690 0.96772 0.99625 0.88464 1.20020 0.90133 1.08518 0.97762 1.20044 1.00349 0.95681 0.90258 1.74505 1.27904 1.11152 0.99982 1.81470 0.85476 1.17408 1.17712 1.50479 1.07239 1.46481 1.14318 1.22479 0.84527 1.03311 0.94879 0.94096 0.91955 0.92728 0.94827 0.91533 0.93133 0.84937 0.93757 0.92424 0.81611 0.80679 0.86349 0.88235 0.87576 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.64 71.98 0.69 -4.13 16 2 C -0.12 -5.58 5.36 30.59 0.16 -5.42 16 3 C 0.23 10.94 2.02 44.17 0.09 11.03 16 4 H -0.02 -1.21 7.85 -2.38 -0.02 -1.23 16 5 C -0.51 -28.29 8.57 25.60 0.22 -28.07 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.69 5.29 84.66 0.45 1.14 16 8 N -0.92 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.68 -27.30 6.26 -499.49 -3.12 -30.42 16 14 C 0.11 3.84 5.55 85.56 0.48 4.31 16 15 C -0.08 -2.32 5.40 -20.13 -0.11 -2.43 16 16 C -0.05 -1.10 9.61 22.06 0.21 -0.89 16 17 C -0.11 -1.91 10.01 22.10 0.22 -1.69 16 18 C 0.08 1.90 6.94 39.03 0.27 2.17 16 19 C -0.04 -1.26 7.26 39.72 0.29 -0.97 16 20 C -0.04 -1.34 9.67 22.31 0.22 -1.12 16 21 N -0.26 -9.06 12.36 -52.44 -0.65 -9.71 16 22 N -0.04 -1.25 13.73 37.02 0.51 -0.74 16 23 N -0.39 -8.64 4.12 -361.11 -1.49 -10.12 16 24 C 0.09 0.78 11.54 127.77 1.47 2.26 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.83 6.65 -2.39 -0.02 1.81 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 3.50 5.94 -2.39 -0.01 3.49 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.33 11.47 6.63 -89.69 -0.59 10.87 16 32 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 33 H 0.06 2.32 7.86 -2.39 -0.02 2.30 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -70.52 327.63 2.64 -67.88 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.46 Total: 12.20 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.66 Total: -23.82 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.51 Total: -103.04 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.52 2.64 -67.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358284647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.093 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds