Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99674 * 2 1 4 4 H 1.48497 * 109.47214 * 240.00023 * 3 2 1 5 5 H 1.48498 * 109.47491 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46692 * 120.00584 * 3 2 1 7 7 C 1.37874 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47180 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47274 * 180.02562 * 10 9 7 12 12 C 1.46848 * 110.99918 * 189.99746 * 11 10 9 13 13 C 1.53037 * 109.52381 * 174.15634 * 12 11 10 14 14 C 1.53123 * 109.27398 * 59.18254 * 13 12 11 15 15 C 1.53000 * 109.52334 * 182.37923 * 14 13 12 16 16 C 1.50698 * 109.47025 * 184.87512 * 15 14 13 17 17 C 1.38674 * 120.41719 * 269.71496 * 16 15 14 18 18 C 1.38627 * 118.42063 * 179.78321 * 17 16 15 19 19 C 1.38228 * 119.15943 * 0.51768 * 18 17 16 20 20 N 1.31852 * 120.76234 * 359.72520 * 19 18 17 21 21 C 1.31877 * 121.73035 * 0.02562 * 20 19 18 22 22 C 1.53120 * 109.21163 * 302.31409 * 14 13 12 23 23 C 1.46845 * 111.00045 * 65.79158 * 11 10 9 24 24 H 0.97000 * 120.00240 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46800 * 60.00208 * 9 7 2 26 26 H 1.08996 * 109.47090 * 300.00448 * 9 7 2 27 27 H 1.09007 * 109.47325 * 59.99866 * 10 9 7 28 28 H 1.09007 * 109.46981 * 300.00478 * 10 9 7 29 29 H 1.09006 * 109.46097 * 54.14433 * 12 11 10 30 30 H 1.08996 * 109.46046 * 294.17217 * 12 11 10 31 31 H 1.08996 * 109.50616 * 299.24564 * 13 12 11 32 32 H 1.08992 * 109.50671 * 179.12200 * 13 12 11 33 33 H 1.09002 * 109.52319 * 62.25202 * 14 13 12 34 34 H 1.09007 * 109.46551 * 304.87278 * 15 14 13 35 35 H 1.08998 * 109.47511 * 64.87075 * 15 14 13 36 36 H 1.08004 * 120.78791 * 0.02841 * 17 16 15 37 37 H 1.08004 * 120.42136 * 180.22159 * 18 17 16 38 38 H 1.07999 * 119.61681 * 179.74459 * 19 18 17 39 39 H 1.07997 * 119.62539 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.49930 * 177.63007 * 22 14 13 41 41 H 1.08997 * 109.50353 * 297.74224 * 22 14 13 42 42 H 1.09003 * 109.45905 * 305.85870 * 23 11 10 43 43 H 1.09002 * 109.46166 * 65.83312 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4170 -6.0651 0.2368 13 6 1.6022 -7.3532 0.3744 14 6 0.7969 -7.5813 -0.9078 15 6 -0.0652 -8.8358 -0.7538 16 6 -0.7654 -9.1271 -2.0561 17 6 -2.0176 -8.5906 -2.3153 18 6 -2.6219 -8.8818 -3.5285 19 6 -1.9656 -9.7003 -4.4285 20 7 -0.7773 -10.1970 -4.1461 21 6 -0.1706 -9.9373 -3.0044 22 6 -0.1040 -6.3690 -1.1594 23 6 0.7613 -5.1086 -1.2518 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 2.9805 -5.8922 1.1538 30 1 3.1074 -6.1598 -0.6013 31 1 0.9211 -7.2644 1.2208 32 1 2.2760 -8.1946 0.5355 33 1 1.4790 -7.7090 -1.7484 34 1 0.5683 -9.6812 -0.4849 35 1 -0.8063 -8.6736 0.0288 36 1 -2.5086 -7.9577 -1.5909 37 1 -3.5953 -8.4783 -3.7654 38 1 -2.4315 -9.9354 -5.3741 39 1 0.8029 -10.3620 -2.8085 40 1 -0.6484 -6.5079 -2.0935 41 1 -0.8118 -6.2648 -0.3372 42 1 0.1224 -4.2409 -1.4162 43 1 1.4596 -5.2080 -2.0829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374526710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = -6.355137 kcal Electronic energy + Delta-G solvation = -20732.060293 eV Core-core repulsion = 17775.029607 eV Total energy + Delta-G solvation = -2957.030686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22789 -39.97102 -36.72652 -35.11478 -33.45524 -32.68455 -31.72721 -31.02995 -28.25516 -26.15289 -24.65914 -24.16705 -23.90845 -22.28151 -21.66359 -20.55681 -18.60389 -17.93198 -17.22491 -16.66489 -16.57344 -16.12138 -16.05125 -15.36868 -15.19010 -14.95725 -14.64933 -14.49812 -14.23637 -13.96235 -13.84880 -13.64169 -13.26062 -13.00535 -12.83104 -12.74000 -12.50068 -12.34182 -12.10655 -11.90883 -11.73218 -11.45365 -11.37289 -11.12756 -11.01678 -10.62231 -10.52849 -10.32868 -9.78810 -9.15572 -8.20782 -6.32409 0.22874 0.39498 1.39112 1.42470 1.50413 2.39498 2.90316 3.10337 3.12241 3.58280 3.77339 3.83971 3.90890 4.06114 4.09795 4.17504 4.20055 4.30925 4.39582 4.49249 4.52752 4.61261 4.65660 4.68108 4.79764 4.85486 4.92303 4.97650 4.98770 5.07076 5.10329 5.19887 5.22825 5.24370 5.28259 5.44304 5.45612 5.57255 5.67210 5.78465 5.85362 6.11415 6.33978 6.38375 6.84427 7.07467 7.36569 8.91101 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.003294 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.352369 B = 8499.318808 C = 9146.684542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.078 3.922 11 N -0.547 5.547 12 C 0.050 3.950 13 C -0.101 4.101 14 C -0.074 4.074 15 C -0.063 4.063 16 C -0.129 4.129 17 C -0.083 4.083 18 C -0.172 4.172 19 C 0.075 3.925 20 N -0.514 5.514 21 C 0.084 3.916 22 C -0.100 4.100 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.064 0.936 28 H 0.014 0.986 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 -21.418 -3.509 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.049 4.049 11 N -0.272 5.272 12 C -0.078 4.078 13 C -0.139 4.139 14 C -0.093 4.093 15 C -0.100 4.100 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.192 4.192 19 C -0.082 4.082 20 N -0.223 5.223 21 C -0.073 4.073 22 C -0.138 4.138 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.011 0.989 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.189 0.811 39 H 0.183 0.817 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.109 -21.849 -3.742 22.267 hybrid contribution 0.303 1.892 -0.235 1.931 sum -1.806 -19.957 -3.978 20.429 Atomic orbital electron populations 1.70101 1.07800 1.27856 1.51295 1.25967 0.95778 1.03317 0.94574 0.85487 0.78279 0.77997 0.79193 1.19254 1.20691 1.19056 1.21611 0.93494 0.92390 1.51125 0.92293 1.18899 0.94162 0.91920 0.94929 1.21963 0.95380 0.88848 0.98747 1.61964 1.28035 1.02211 1.34993 1.22200 0.94091 0.91117 1.00344 1.21607 0.98885 0.95789 0.97599 1.21114 0.96448 0.93596 0.98138 1.20571 0.98759 0.97732 0.92981 1.21049 0.95681 0.97911 0.98425 1.21851 0.94523 0.97114 0.97406 1.22447 1.02497 0.99503 0.94736 1.23133 0.90840 0.93966 1.00248 1.67664 1.10821 1.23229 1.20566 1.22950 0.99991 0.95525 0.88804 1.21641 0.97622 0.92763 1.01755 1.22074 0.96600 0.98903 0.89644 0.92723 0.98958 0.98924 0.91751 0.96809 0.90681 0.95586 0.91119 0.88911 0.91821 0.88595 0.89887 0.83815 0.82703 0.81107 0.81696 0.91556 0.91408 0.93175 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.10 4.90 29.85 0.15 2.25 16 10 C 0.08 3.43 4.90 86.30 0.42 3.85 16 11 N -0.55 -20.05 4.66 -896.08 -4.17 -24.22 16 12 C 0.05 1.39 5.46 86.33 0.47 1.87 16 13 C -0.10 -2.07 5.38 30.65 0.16 -1.90 16 14 C -0.07 -1.49 2.24 -10.71 -0.02 -1.52 16 15 C -0.06 -0.95 4.87 29.85 0.15 -0.81 16 16 C -0.13 -2.30 4.72 -19.77 -0.09 -2.39 16 17 C -0.08 -1.46 8.24 22.47 0.19 -1.27 16 18 C -0.17 -2.84 10.11 22.36 0.23 -2.61 16 19 C 0.07 1.37 11.18 84.69 0.95 2.32 16 20 N -0.51 -11.43 10.36 -195.85 -2.03 -13.46 16 21 C 0.08 1.63 10.86 84.67 0.92 2.55 16 22 C -0.10 -2.60 4.92 30.69 0.15 -2.44 16 23 C 0.06 1.95 5.29 86.37 0.46 2.41 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.46 6.43 -2.39 -0.02 -0.48 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.06 2.74 7.99 -2.38 -0.02 2.72 16 28 H 0.01 0.61 8.12 -2.38 -0.02 0.59 16 29 H 0.07 2.02 8.02 -2.38 -0.02 2.00 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.10 8.09 -2.38 -0.02 1.08 16 35 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 36 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.07 1.64 6.46 -2.39 -0.02 1.62 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 2.08 6.21 -2.39 -0.01 2.06 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -69.10 341.50 1.88 -67.22 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.96 Total: 9.76 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.81 Total: -28.85 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -5.92 Total: -94.88 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.10 1.88 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374526710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.867 kcal (2) G-P(sol) polarization free energy of solvation -69.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds