Wall clock time and date at job start Mon Mar 30 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.46876 * 239.99650 * 3 2 1 5 5 H 1.48500 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46955 * 119.99728 * 3 2 1 7 7 C 1.37878 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99968 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47160 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.78009 * 56.79708 * 12 11 10 14 14 C 1.54598 * 110.72373 * 293.55276 * 12 11 10 15 15 C 1.54000 * 105.22213 * 219.73164 * 14 12 11 16 16 N 1.47897 * 107.05672 * 358.72428 * 15 14 12 17 17 C 1.46906 * 110.99555 * 145.84575 * 16 15 14 18 18 C 1.50696 * 109.47144 * 290.12261 * 17 16 15 19 19 C 1.38239 * 119.99966 * 269.73264 * 18 17 16 20 20 C 1.38241 * 119.99812 * 179.76776 * 19 18 17 21 21 C 1.38233 * 119.99670 * 0.50024 * 20 19 18 22 22 C 1.38233 * 120.00284 * 359.75266 * 21 20 19 23 23 C 1.38233 * 119.99989 * 90.00344 * 18 17 16 24 24 C 1.48533 * 105.82381 * 25.32929 * 16 15 14 25 25 H 0.97000 * 119.99630 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47146 * 60.00150 * 9 7 2 27 27 H 1.08997 * 109.47292 * 299.99526 * 9 7 2 28 28 H 1.00903 * 110.99631 * 56.05048 * 10 9 7 29 29 H 1.09000 * 109.46808 * 60.00491 * 11 10 9 30 30 H 1.08992 * 109.47545 * 300.00330 * 11 10 9 31 31 H 1.09002 * 110.31193 * 100.76522 * 14 12 11 32 32 H 1.09000 * 110.30788 * 338.69466 * 14 12 11 33 33 H 1.09000 * 109.91521 * 118.07714 * 15 14 12 34 34 H 1.09002 * 109.91162 * 239.17394 * 15 14 12 35 35 H 1.08998 * 109.47177 * 50.12716 * 17 16 15 36 36 H 1.08998 * 109.46713 * 170.12374 * 17 16 15 37 37 H 1.07998 * 119.99676 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.99637 * 180.22507 * 20 19 18 39 39 H 1.07999 * 119.99454 * 179.72304 * 21 20 19 40 40 H 1.07998 * 119.99796 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99926 * 359.97438 * 23 18 17 42 42 H 1.09003 * 110.66452 * 79.22844 * 24 16 15 43 43 H 1.08998 * 110.66933 * 202.35443 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 1 3.2035 -5.9560 0.8545 14 6 3.3257 -6.0629 -1.3237 15 6 3.4832 -7.5532 -1.6784 16 7 2.8401 -8.3275 -0.5948 17 6 2.2159 -9.5493 -1.1198 18 6 1.0123 -9.1820 -1.9490 19 6 -0.2324 -9.0846 -1.3553 20 6 -1.3356 -8.7430 -2.1150 21 6 -1.1960 -8.5090 -3.4702 22 6 0.0477 -8.6116 -4.0648 23 6 1.1519 -8.9481 -3.3042 24 6 1.8228 -7.4234 0.0002 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8404 -3.5487 0.7820 29 1 0.8801 -4.9817 -0.8887 30 1 0.8806 -4.9813 0.8912 31 1 4.3035 -5.6016 -1.1850 32 1 2.7709 -5.5445 -2.1057 33 1 2.9903 -7.7630 -2.6277 34 1 4.5407 -7.8093 -1.7447 35 1 2.9337 -10.0866 -1.7395 36 1 1.9054 -10.1841 -0.2899 37 1 -0.3422 -9.2721 -0.2974 38 1 -2.3074 -8.6634 -1.6505 39 1 -2.0587 -8.2466 -4.0645 40 1 0.1567 -8.4291 -5.1237 41 1 2.1235 -9.0280 -3.7687 42 1 0.9257 -7.3938 -0.6182 43 1 1.5805 -7.7330 1.0168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380912291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:34 Heat of formation + Delta-G solvation = 26.378584 kcal Electronic energy + Delta-G solvation = -20951.306900 eV Core-core repulsion = 17995.695654 eV Total energy + Delta-G solvation = -2955.611245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24391 -38.21558 -35.46909 -33.31274 -32.13346 -31.17455 -30.14663 -28.99921 -26.96641 -25.43098 -23.47129 -22.63740 -21.78937 -21.34245 -20.39763 -19.79697 -16.95523 -16.45551 -15.97630 -15.71230 -15.24792 -15.10821 -14.58214 -14.26282 -14.17974 -13.65956 -13.53215 -13.13877 -12.94678 -12.91629 -12.33211 -12.06573 -11.60040 -11.58151 -11.44658 -11.31978 -11.14572 -11.12877 -10.88998 -10.79781 -10.51903 -10.35669 -10.21097 -9.82099 -9.16111 -9.01397 -8.86644 -8.45696 -8.41722 -7.24528 -6.01253 -4.03177 1.18908 1.25909 3.34868 3.38422 3.41755 3.61811 4.09030 4.44254 4.61139 4.64870 4.79285 4.85896 4.93832 4.97142 5.14768 5.25769 5.34512 5.35517 5.38766 5.49725 5.59676 5.61674 5.74376 5.81257 5.86264 5.88153 5.96077 5.99693 6.10865 6.27505 6.30587 6.34252 6.38387 6.41674 6.52257 6.65944 6.85651 6.93559 6.99775 7.28337 7.45025 7.80637 8.15474 8.43283 8.64875 9.06148 9.61643 11.09913 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.003669 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.162337 B = 7630.490062 C = 8233.266644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.070 3.930 12 C -0.085 4.085 13 H 0.076 0.924 14 C -0.110 4.110 15 C 0.024 3.976 16 N -0.506 5.506 17 C 0.082 3.918 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.111 4.111 24 C 0.028 3.972 25 H 0.261 0.739 26 H 0.026 0.974 27 H -0.015 1.015 28 H 0.327 0.673 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -21.311 -4.629 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.317 5.317 11 C -0.061 4.061 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.148 4.148 15 C -0.104 4.104 16 N -0.228 5.228 17 C -0.046 4.046 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.100 4.100 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.003 0.997 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.334 -21.349 -4.919 21.949 hybrid contribution -0.684 1.206 0.229 1.405 sum 0.650 -20.143 -4.690 20.692 Atomic orbital electron populations 1.69960 1.06099 1.26848 1.50947 1.24993 0.94868 0.99351 0.95366 0.86542 0.79420 0.82672 0.78654 1.20162 1.21354 1.20252 1.21160 0.93478 0.90276 1.50313 0.92013 1.19536 0.90615 0.87449 0.95632 1.60652 1.21111 1.01156 1.48805 1.21845 0.94694 0.90062 0.99481 1.22080 0.97033 0.92989 0.98309 0.90576 1.22259 1.01121 0.93895 0.97551 1.23068 0.99500 0.94151 0.93677 1.65133 1.25814 1.05023 1.26785 1.21371 0.92131 0.93864 0.97225 1.20587 0.96086 1.00720 0.94669 1.21078 0.92181 0.99526 0.99739 1.21175 0.98778 0.99649 0.94224 1.21174 0.97555 0.99840 0.95149 1.21159 0.92893 0.99824 0.99932 1.21080 0.98530 0.99845 0.93482 1.23512 0.94631 0.92062 0.99774 0.92894 0.95604 0.99726 0.85635 0.92066 0.96509 0.91079 0.91029 0.93221 0.90822 0.90152 0.89875 0.86101 0.86028 0.86139 0.86124 0.86184 0.92054 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.22 5.44 -4.97 -0.03 5.19 16 10 N -0.69 -14.99 6.30 -115.06 -0.73 -15.71 16 11 C 0.07 1.27 5.02 -3.82 -0.02 1.25 16 12 C -0.08 -1.26 3.25 -88.67 -0.29 -1.55 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.11 -1.59 6.32 -25.37 -0.16 -1.75 16 15 C 0.02 0.29 6.46 -2.75 -0.02 0.27 16 16 N -0.51 -6.09 5.54 -231.79 -1.28 -7.37 16 17 C 0.08 0.83 5.69 -4.97 -0.03 0.80 16 18 C -0.12 -1.27 3.95 -104.63 -0.41 -1.69 16 19 C -0.11 -1.13 7.51 -39.58 -0.30 -1.43 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.11 -1.17 8.19 -39.58 -0.32 -1.49 16 24 C 0.03 0.37 5.52 -1.81 -0.01 0.36 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 28 H 0.33 6.85 8.72 -39.29 -0.34 6.51 16 29 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.16 7.80 -51.93 -0.41 0.75 16 33 H 0.05 0.58 4.86 -51.93 -0.25 0.33 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 36 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.11 7.16 -52.49 -0.38 0.73 16 42 H 0.06 0.84 4.77 -51.93 -0.25 0.59 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -30.69 341.11 -11.43 -42.12 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.08 Total: 4.01 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.20 Total: -18.59 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -1.27 Total: -49.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.69 -11.43 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380912291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.498 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds