Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.46876 * 239.99650 * 3 2 1 5 5 H 1.48500 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46955 * 119.99728 * 3 2 1 7 7 C 1.37878 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99968 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47160 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.78009 * 56.79708 * 12 11 10 14 14 C 1.54598 * 110.72373 * 293.55276 * 12 11 10 15 15 C 1.54000 * 105.22213 * 219.73164 * 14 12 11 16 16 N 1.47897 * 107.05672 * 358.72428 * 15 14 12 17 17 C 1.46906 * 110.99555 * 145.84575 * 16 15 14 18 18 C 1.50696 * 109.47144 * 290.12261 * 17 16 15 19 19 C 1.38239 * 119.99966 * 269.73264 * 18 17 16 20 20 C 1.38241 * 119.99812 * 179.76776 * 19 18 17 21 21 C 1.38233 * 119.99670 * 0.50024 * 20 19 18 22 22 C 1.38233 * 120.00284 * 359.75266 * 21 20 19 23 23 C 1.38233 * 119.99989 * 90.00344 * 18 17 16 24 24 C 1.48533 * 105.82381 * 25.32929 * 16 15 14 25 25 H 0.97000 * 119.99630 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47146 * 60.00150 * 9 7 2 27 27 H 1.08997 * 109.47292 * 299.99526 * 9 7 2 28 28 H 1.00903 * 110.99631 * 56.05048 * 10 9 7 29 29 H 1.09000 * 109.46808 * 60.00491 * 11 10 9 30 30 H 1.08992 * 109.47545 * 300.00330 * 11 10 9 31 31 H 1.09002 * 110.31193 * 100.76522 * 14 12 11 32 32 H 1.09000 * 110.30788 * 338.69466 * 14 12 11 33 33 H 1.09000 * 109.91521 * 118.07714 * 15 14 12 34 34 H 1.09002 * 109.91162 * 239.17394 * 15 14 12 35 35 H 1.08998 * 109.47177 * 50.12716 * 17 16 15 36 36 H 1.08998 * 109.46713 * 170.12374 * 17 16 15 37 37 H 1.07998 * 119.99676 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.99637 * 180.22507 * 20 19 18 39 39 H 1.07999 * 119.99454 * 179.72304 * 21 20 19 40 40 H 1.07998 * 119.99796 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99926 * 359.97438 * 23 18 17 42 42 H 1.09003 * 110.66452 * 79.22844 * 24 16 15 43 43 H 1.08998 * 110.66933 * 202.35443 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 1 3.2035 -5.9560 0.8545 14 6 3.3257 -6.0629 -1.3237 15 6 3.4832 -7.5532 -1.6784 16 7 2.8401 -8.3275 -0.5948 17 6 2.2159 -9.5493 -1.1198 18 6 1.0123 -9.1820 -1.9490 19 6 -0.2324 -9.0846 -1.3553 20 6 -1.3356 -8.7430 -2.1150 21 6 -1.1960 -8.5090 -3.4702 22 6 0.0477 -8.6116 -4.0648 23 6 1.1519 -8.9481 -3.3042 24 6 1.8228 -7.4234 0.0002 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8404 -3.5487 0.7820 29 1 0.8801 -4.9817 -0.8887 30 1 0.8806 -4.9813 0.8912 31 1 4.3035 -5.6016 -1.1850 32 1 2.7709 -5.5445 -2.1057 33 1 2.9903 -7.7630 -2.6277 34 1 4.5407 -7.8093 -1.7447 35 1 2.9337 -10.0866 -1.7395 36 1 1.9054 -10.1841 -0.2899 37 1 -0.3422 -9.2721 -0.2974 38 1 -2.3074 -8.6634 -1.6505 39 1 -2.0587 -8.2466 -4.0645 40 1 0.1567 -8.4291 -5.1237 41 1 2.1235 -9.0280 -3.7687 42 1 0.9257 -7.3938 -0.6182 43 1 1.5805 -7.7330 1.0168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380912291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = 6.744340 kcal Electronic energy + Delta-G solvation = -20952.158304 eV Core-core repulsion = 17995.695654 eV Total energy + Delta-G solvation = -2956.462650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13638 -39.20934 -37.10508 -34.95997 -33.72697 -31.97783 -31.31804 -30.09821 -28.69319 -26.65125 -24.93856 -23.58969 -23.24694 -22.67898 -21.34132 -21.05017 -18.56114 -17.76030 -17.05554 -16.91116 -16.55751 -16.17458 -16.00118 -15.83225 -15.25315 -14.84118 -14.75668 -14.38430 -14.27316 -13.90019 -13.77499 -13.49271 -13.16456 -12.92564 -12.70349 -12.66790 -12.46397 -12.31459 -12.16980 -12.14160 -11.89030 -11.75564 -11.65901 -11.42059 -11.23158 -10.66259 -9.81305 -9.67589 -9.36147 -9.12520 -8.23346 -6.35058 0.39362 0.46795 1.40912 1.44859 1.52854 2.39660 2.80651 3.09885 3.13347 3.43571 3.75811 3.87260 3.93892 4.00666 4.07300 4.12268 4.23332 4.35981 4.39633 4.51382 4.57939 4.60725 4.70542 4.74291 4.75563 4.86407 4.87094 5.02125 5.07383 5.10539 5.12392 5.14481 5.24478 5.32288 5.39057 5.53022 5.60083 5.60359 5.61215 5.92765 6.00343 6.07635 6.09323 6.43067 6.70839 6.88000 7.36137 8.88305 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.003669 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.162337 B = 7630.490062 C = 8233.266644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.683 5.683 11 C 0.075 3.925 12 C -0.079 4.079 13 H 0.080 0.920 14 C -0.109 4.109 15 C 0.030 3.970 16 N -0.506 5.506 17 C 0.084 3.916 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.121 4.121 24 C 0.036 3.964 25 H 0.265 0.735 26 H -0.005 1.005 27 H -0.041 1.041 28 H 0.335 0.665 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.055 0.945 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -21.873 -4.623 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.313 5.313 11 C -0.055 4.055 12 C -0.098 4.098 13 H 0.098 0.902 14 C -0.148 4.148 15 C -0.098 4.098 16 N -0.228 5.228 17 C -0.044 4.044 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.092 4.092 25 H 0.074 0.926 26 H 0.013 0.987 27 H -0.023 1.023 28 H 0.152 0.848 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.073 0.927 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.693 -21.943 -4.912 22.647 hybrid contribution -1.156 1.328 0.206 1.773 sum 1.537 -20.615 -4.706 21.201 Atomic orbital electron populations 1.70095 1.07899 1.28101 1.51463 1.25983 0.95786 1.03480 0.94472 0.85358 0.78090 0.77458 0.79226 1.19299 1.20748 1.18955 1.21518 0.93851 0.91348 1.50764 0.91608 1.19185 0.90652 0.89125 0.92905 1.60521 1.20301 1.01314 1.49171 1.21842 0.95437 0.89558 0.98664 1.21981 0.96307 0.92728 0.98830 0.90182 1.22209 1.00437 0.95638 0.96477 1.23030 1.00510 0.92291 0.93975 1.65160 1.25530 1.05222 1.26892 1.21449 0.92140 0.93004 0.97782 1.20708 0.96344 1.00874 0.94901 1.21286 0.92367 0.99565 1.00346 1.21444 0.99516 0.99704 0.94544 1.21459 0.98266 0.99796 0.95474 1.21445 0.92962 0.99720 1.00892 1.21314 0.99186 0.99762 0.93674 1.23407 0.94415 0.90968 1.00431 0.92596 0.98680 1.02325 0.84791 0.93483 0.96623 0.91252 0.93238 0.92674 0.89391 0.88710 0.88762 0.85184 0.84844 0.84800 0.84665 0.84989 0.92707 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.25 9.32 25.60 0.24 -31.01 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.60 5.44 85.56 0.47 12.07 16 10 N -0.68 -30.27 6.30 -517.93 -3.26 -33.54 16 11 C 0.08 2.78 5.02 86.31 0.43 3.22 16 12 C -0.08 -2.30 3.25 -9.53 -0.03 -2.34 16 13 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 14 C -0.11 -3.08 6.32 31.48 0.20 -2.88 16 15 C 0.03 0.66 6.46 86.45 0.56 1.22 16 16 N -0.51 -11.07 5.54 -887.24 -4.91 -15.98 16 17 C 0.08 1.49 5.69 85.55 0.49 1.98 16 18 C -0.13 -2.53 3.95 -19.87 -0.08 -2.61 16 19 C -0.12 -2.37 7.51 22.27 0.17 -2.21 16 20 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 22 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 23 C -0.12 -2.39 8.19 22.27 0.18 -2.21 16 24 C 0.04 0.89 5.52 86.70 0.48 1.36 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 28 H 0.34 14.05 8.72 -89.69 -0.78 13.26 16 29 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.60 7.80 -2.39 -0.02 1.59 16 33 H 0.06 1.19 4.86 -2.39 -0.01 1.18 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.43 8.03 -2.39 -0.02 1.41 16 36 H 0.09 1.48 8.08 -2.39 -0.02 1.47 16 37 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.13 2.20 7.16 -2.91 -0.02 2.18 16 42 H 0.05 1.45 4.77 -2.39 -0.01 1.44 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.65 341.11 -1.44 -67.09 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.20 Total: 23.14 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.23 Total: -30.24 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -7.89 Total: -106.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.65 -1.44 -67.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380912291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.835 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds