Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47483 * 299.99826 * 3 2 1 6 6 H 1.48495 * 109.47286 * 60.00100 * 3 2 1 7 7 C 1.37880 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46716 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46716 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47097 * 179.97438 * 12 11 10 14 14 C 1.42903 * 114.00233 * 184.54345 * 13 12 11 15 15 H 1.09002 * 109.24686 * 328.60779 * 14 13 12 16 16 C 1.52732 * 109.25070 * 88.07119 * 14 13 12 17 17 C 1.53324 * 108.38197 * 171.34113 * 16 14 13 18 18 C 1.52735 * 108.38451 * 290.11956 * 17 16 14 19 19 C 1.50634 * 110.58755 * 51.09137 * 18 17 16 20 20 C 1.38911 * 117.75096 * 162.51640 * 19 18 17 21 21 C 1.37927 * 120.54790 * 179.71264 * 20 19 18 22 22 C 1.38259 * 119.76825 * 359.90549 * 21 20 19 23 23 C 1.37930 * 119.77421 * 0.10585 * 22 21 20 24 24 C 1.37659 * 122.56598 * 342.28866 * 19 18 17 25 25 H 0.96992 * 119.99554 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47191 * 60.00356 * 9 7 2 27 27 H 1.09001 * 109.47385 * 300.00344 * 9 7 2 28 28 H 1.08997 * 109.46835 * 60.00294 * 10 9 7 29 29 H 1.08998 * 109.46824 * 299.99841 * 10 9 7 30 30 H 1.08997 * 109.47227 * 60.00536 * 11 10 9 31 31 H 1.08998 * 109.47345 * 299.99524 * 11 10 9 32 32 H 1.09004 * 109.47069 * 60.00035 * 12 11 10 33 33 H 1.09001 * 109.47137 * 300.00249 * 12 11 10 34 34 H 1.09000 * 109.67952 * 51.61936 * 16 14 13 35 35 H 1.08995 * 109.68718 * 291.06879 * 16 14 13 36 36 H 1.09001 * 109.68250 * 170.39777 * 17 16 14 37 37 H 1.08999 * 109.67963 * 49.84428 * 17 16 14 38 38 H 1.08995 * 109.25665 * 290.80358 * 18 17 16 39 39 H 1.09004 * 109.22088 * 171.35607 * 18 17 16 40 40 H 1.08003 * 119.72613 * 359.73238 * 20 19 18 41 41 H 1.08002 * 120.11165 * 179.88669 * 21 20 19 42 42 H 1.08001 * 120.11062 * 179.82723 * 22 21 20 43 43 H 1.08003 * 119.72990 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 0.0008 13 8 1.7601 -7.3876 0.0020 14 6 2.5965 -8.5416 0.1061 15 1 3.5532 -8.3365 -0.3744 16 6 2.8320 -8.8614 1.5808 17 6 3.5435 -10.2164 1.6741 18 6 2.5574 -11.3076 1.2622 19 6 1.9180 -10.9723 -0.0599 20 6 1.2929 -11.9996 -0.7551 21 6 0.6839 -11.7558 -1.9684 22 6 0.6935 -10.4783 -2.4969 23 6 1.3140 -9.4569 -1.8083 24 6 1.9305 -9.7010 -0.5877 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8540 -5.0446 0.8903 32 1 3.1012 -6.0918 0.8908 33 1 3.1013 -6.0927 -0.8892 34 1 1.8763 -8.9119 2.1026 35 1 3.4552 -8.0879 2.0293 36 1 3.8738 -10.3878 2.6986 37 1 4.4031 -10.2265 1.0040 38 1 1.7826 -11.3979 2.0235 39 1 3.0875 -12.2560 1.1748 40 1 1.2833 -12.9975 -0.3420 41 1 0.2014 -12.5602 -2.5038 42 1 0.2208 -10.2817 -3.4478 43 1 1.3207 -8.4591 -2.2216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385370629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -60.175972 kcal Electronic energy + Delta-G solvation = -20277.284999 eV Core-core repulsion = 17285.627716 eV Total energy + Delta-G solvation = -2991.657284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.34897 -37.89426 -35.81486 -34.54120 -32.51767 -31.65870 -30.42013 -28.96070 -28.08440 -24.82064 -23.56385 -22.91055 -22.11000 -21.68753 -20.08936 -19.53398 -16.98433 -16.44638 -16.18152 -15.85382 -15.54902 -15.22571 -14.62357 -14.40951 -14.26414 -13.64955 -13.50470 -13.39547 -12.87106 -12.60542 -12.49588 -12.32577 -11.83911 -11.65510 -11.61110 -11.36744 -11.19454 -11.04382 -10.87524 -10.65106 -10.55724 -10.45531 -10.35994 -9.66662 -9.45823 -9.29904 -9.01915 -8.86365 -8.70681 -8.32545 -5.97386 -3.99722 1.18646 1.27010 3.32290 3.39534 3.43593 3.50664 3.87093 4.43020 4.46441 4.48621 4.70757 4.83366 4.88525 4.94999 5.02902 5.09776 5.22535 5.31010 5.38041 5.41680 5.43774 5.53291 5.60272 5.64497 5.74343 5.78226 5.81065 5.92249 5.99248 6.05184 6.12914 6.19792 6.35624 6.42026 6.49950 6.53594 6.80272 6.88037 6.94193 7.12287 7.39329 7.71553 7.86427 8.03544 8.45737 9.07921 9.64153 11.14053 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.002752 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.596179 B =10170.157584 C =10751.969316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.061 3.939 13 O -0.377 6.377 14 C 0.131 3.869 15 H 0.068 0.932 16 C -0.142 4.142 17 C -0.117 4.117 18 C -0.082 4.082 19 C -0.069 4.069 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.093 4.093 24 C -0.078 4.078 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -25.983 -0.156 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.015 4.015 13 O -0.296 6.296 14 C 0.073 3.927 15 H 0.086 0.914 16 C -0.180 4.180 17 C -0.155 4.155 18 C -0.119 4.119 19 C -0.069 4.069 20 C -0.147 4.147 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.078 4.078 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.033 -25.870 -0.169 26.355 hybrid contribution 0.587 1.005 -0.059 1.165 sum 5.620 -24.865 -0.229 25.493 Atomic orbital electron populations 1.69983 1.06050 1.26439 1.51026 1.25042 0.94853 0.99266 0.95419 0.86547 0.80093 0.83854 0.77566 1.19769 1.21026 1.21022 1.21311 0.93051 0.91144 1.50312 0.92681 1.19095 0.93999 0.91199 0.97326 1.21576 0.99172 0.93485 1.00268 1.21637 0.98070 0.92876 1.02761 1.22759 0.95466 0.83593 0.99665 1.88001 1.33834 1.13251 1.94527 1.20686 0.92929 0.84672 0.94407 0.91411 1.22063 1.01843 0.97379 0.96712 1.21515 0.98025 0.94143 1.01772 1.20506 0.98376 0.98975 0.94019 1.19574 0.98473 0.92603 0.96212 1.21081 0.99348 0.98617 0.95631 1.21076 0.99485 0.96980 0.96016 1.21113 1.00230 0.93097 1.00230 1.21217 0.96217 0.99460 0.94183 1.19489 0.99951 0.93174 0.95222 0.93078 0.96538 0.96547 0.93366 0.93354 0.91716 0.91707 0.93553 0.93605 0.90528 0.91085 0.91019 0.91573 0.90440 0.90758 0.86252 0.86204 0.86022 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.12 -2.07 5.58 -26.73 -0.15 -2.22 16 12 C 0.06 0.91 5.71 37.16 0.21 1.12 16 13 O -0.38 -5.63 9.17 -35.23 -0.32 -5.95 16 14 C 0.13 1.59 2.60 -28.05 -0.07 1.52 16 15 H 0.07 0.77 7.83 -51.93 -0.41 0.37 16 16 C -0.14 -1.49 5.50 -26.70 -0.15 -1.64 16 17 C -0.12 -0.96 5.98 -26.70 -0.16 -1.12 16 18 C -0.08 -0.67 5.67 -28.05 -0.16 -0.83 16 19 C -0.07 -0.72 5.74 -104.62 -0.60 -1.32 16 20 C -0.13 -1.23 9.61 -39.45 -0.38 -1.60 16 21 C -0.12 -1.12 10.05 -39.69 -0.40 -1.52 16 22 C -0.13 -1.36 10.05 -39.69 -0.40 -1.76 16 23 C -0.09 -1.13 9.24 -39.45 -0.36 -1.50 16 24 C -0.08 -0.95 5.57 -104.62 -0.58 -1.53 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.64 7.80 -51.93 -0.41 0.24 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 40 H 0.12 0.86 8.05 -52.48 -0.42 0.44 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 1.58 7.68 -52.48 -0.40 1.18 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -31.39 348.28 -10.75 -42.14 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.50 Total: -3.51 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.89 Total: -28.15 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.32 Total: -5.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.39 -10.75 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385370629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.035 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds