Wall clock time and date at job start Mon Mar 30 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47483 * 299.99826 * 3 2 1 6 6 H 1.48495 * 109.47286 * 60.00100 * 3 2 1 7 7 C 1.37880 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46716 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46716 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47097 * 179.97438 * 12 11 10 14 14 C 1.42903 * 114.00233 * 184.54345 * 13 12 11 15 15 H 1.09002 * 109.24686 * 328.60779 * 14 13 12 16 16 C 1.52732 * 109.25070 * 88.07119 * 14 13 12 17 17 C 1.53324 * 108.38197 * 171.34113 * 16 14 13 18 18 C 1.52735 * 108.38451 * 290.11956 * 17 16 14 19 19 C 1.50634 * 110.58755 * 51.09137 * 18 17 16 20 20 C 1.38911 * 117.75096 * 162.51640 * 19 18 17 21 21 C 1.37927 * 120.54790 * 179.71264 * 20 19 18 22 22 C 1.38259 * 119.76825 * 359.90549 * 21 20 19 23 23 C 1.37930 * 119.77421 * 0.10585 * 22 21 20 24 24 C 1.37659 * 122.56598 * 342.28866 * 19 18 17 25 25 H 0.96992 * 119.99554 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47191 * 60.00356 * 9 7 2 27 27 H 1.09001 * 109.47385 * 300.00344 * 9 7 2 28 28 H 1.08997 * 109.46835 * 60.00294 * 10 9 7 29 29 H 1.08998 * 109.46824 * 299.99841 * 10 9 7 30 30 H 1.08997 * 109.47227 * 60.00536 * 11 10 9 31 31 H 1.08998 * 109.47345 * 299.99524 * 11 10 9 32 32 H 1.09004 * 109.47069 * 60.00035 * 12 11 10 33 33 H 1.09001 * 109.47137 * 300.00249 * 12 11 10 34 34 H 1.09000 * 109.67952 * 51.61936 * 16 14 13 35 35 H 1.08995 * 109.68718 * 291.06879 * 16 14 13 36 36 H 1.09001 * 109.68250 * 170.39777 * 17 16 14 37 37 H 1.08999 * 109.67963 * 49.84428 * 17 16 14 38 38 H 1.08995 * 109.25665 * 290.80358 * 18 17 16 39 39 H 1.09004 * 109.22088 * 171.35607 * 18 17 16 40 40 H 1.08003 * 119.72613 * 359.73238 * 20 19 18 41 41 H 1.08002 * 120.11165 * 179.88669 * 21 20 19 42 42 H 1.08001 * 120.11062 * 179.82723 * 22 21 20 43 43 H 1.08003 * 119.72990 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 0.0008 13 8 1.7601 -7.3876 0.0020 14 6 2.5965 -8.5416 0.1061 15 1 3.5532 -8.3365 -0.3744 16 6 2.8320 -8.8614 1.5808 17 6 3.5435 -10.2164 1.6741 18 6 2.5574 -11.3076 1.2622 19 6 1.9180 -10.9723 -0.0599 20 6 1.2929 -11.9996 -0.7551 21 6 0.6839 -11.7558 -1.9684 22 6 0.6935 -10.4783 -2.4969 23 6 1.3140 -9.4569 -1.8083 24 6 1.9305 -9.7010 -0.5877 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8540 -5.0446 0.8903 32 1 3.1012 -6.0918 0.8908 33 1 3.1013 -6.0927 -0.8892 34 1 1.8763 -8.9119 2.1026 35 1 3.4552 -8.0879 2.0293 36 1 3.8738 -10.3878 2.6986 37 1 4.4031 -10.2265 1.0040 38 1 1.7826 -11.3979 2.0235 39 1 3.0875 -12.2560 1.1748 40 1 1.2833 -12.9975 -0.3420 41 1 0.2014 -12.5602 -2.5038 42 1 0.2208 -10.2817 -3.4478 43 1 1.3207 -8.4591 -2.2216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385370629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:44 Heat of formation + Delta-G solvation = -75.302871 kcal Electronic energy + Delta-G solvation = -20277.940951 eV Core-core repulsion = 17285.627716 eV Total energy + Delta-G solvation = -2992.313235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.16533 -38.93570 -36.80379 -36.13840 -34.37495 -32.70527 -31.18577 -30.49710 -29.13440 -26.62379 -24.44614 -23.73043 -23.31998 -22.89633 -21.80670 -20.32554 -18.46373 -17.88775 -17.38823 -16.95641 -16.50622 -16.38918 -16.14488 -15.52187 -15.28913 -14.76880 -14.52774 -14.24846 -14.22852 -13.98666 -13.72103 -13.40272 -13.16559 -13.06060 -12.86897 -12.65213 -12.40537 -12.32597 -12.22256 -12.09081 -11.85542 -11.64050 -11.44700 -11.32689 -11.31023 -11.06852 -10.57220 -10.50231 -9.67514 -9.49224 -8.20743 -6.32459 0.38983 0.47476 1.39667 1.40243 1.53787 2.39983 2.58521 2.95305 3.12221 3.65362 3.73663 3.94164 4.03217 4.06734 4.11367 4.17911 4.23283 4.29673 4.35113 4.43521 4.52438 4.58465 4.61373 4.65781 4.76500 4.85615 4.92081 4.98215 5.01324 5.11132 5.14073 5.15410 5.23699 5.26940 5.28123 5.36248 5.52415 5.59578 5.63127 5.72632 5.74181 5.84941 6.11486 6.23483 6.30295 6.85278 7.37064 8.91651 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.002752 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.596179 B =10170.157584 C =10751.969316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.108 4.108 12 C 0.071 3.929 13 O -0.397 6.397 14 C 0.127 3.873 15 H 0.073 0.927 16 C -0.141 4.141 17 C -0.112 4.112 18 C -0.081 4.081 19 C -0.077 4.077 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.101 4.101 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 -27.480 0.271 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.015 4.015 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.005 4.005 13 O -0.317 6.317 14 C 0.070 3.930 15 H 0.091 0.909 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.118 4.118 19 C -0.077 4.077 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.136 4.136 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.736 -27.385 0.258 28.202 hybrid contribution -0.011 1.404 -0.217 1.421 sum 6.725 -25.980 0.042 26.837 Atomic orbital electron populations 1.70122 1.07934 1.27745 1.51807 1.26054 0.95806 1.03602 0.94728 0.85350 0.79101 0.78506 0.77795 1.18370 1.20363 1.20317 1.21758 0.93657 0.92321 1.50362 0.91911 1.19026 0.94516 0.93292 0.94695 1.21351 0.98007 0.92702 1.01054 1.21451 0.98292 0.93044 1.01827 1.22537 0.94343 0.82760 1.00852 1.87957 1.35043 1.13900 1.94794 1.20879 0.92707 0.83722 0.95733 0.90929 1.22051 1.01554 0.99080 0.95178 1.21517 0.97832 0.92584 1.03030 1.20578 0.98564 0.99868 0.92779 1.19912 0.98402 0.92117 0.97231 1.21463 0.98371 0.99613 0.95443 1.21436 0.98968 0.97080 0.96202 1.21345 1.00158 0.93421 1.00799 1.21270 0.97819 0.99432 0.95055 1.19641 1.01000 0.93994 0.95506 0.92766 0.99258 0.99209 0.92410 0.92522 0.92749 0.92651 0.92150 0.92546 0.91829 0.90822 0.89152 0.91205 0.89950 0.88533 0.83520 0.83591 0.84775 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.93 5.15 30.60 0.16 -3.77 16 11 C -0.11 -3.96 5.58 30.60 0.17 -3.79 16 12 C 0.07 2.10 5.71 71.98 0.41 2.51 16 13 O -0.40 -12.03 9.17 -148.98 -1.37 -13.39 16 14 C 0.13 3.06 2.60 29.74 0.08 3.14 16 15 H 0.07 1.63 7.83 -2.39 -0.02 1.61 16 16 C -0.14 -2.81 5.50 30.61 0.17 -2.64 16 17 C -0.11 -1.59 5.98 30.61 0.18 -1.41 16 18 C -0.08 -1.13 5.67 29.74 0.17 -0.96 16 19 C -0.08 -1.49 5.74 -19.86 -0.11 -1.61 16 20 C -0.13 -2.19 9.61 22.36 0.21 -1.98 16 21 C -0.12 -2.04 10.05 22.20 0.22 -1.82 16 22 C -0.14 -2.89 10.05 22.20 0.22 -2.66 16 23 C -0.12 -2.95 9.24 22.36 0.21 -2.75 16 24 C -0.10 -2.45 5.57 -19.86 -0.11 -2.56 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.60 7.80 -2.38 -0.02 1.59 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.93 8.13 -2.39 -0.02 0.91 16 40 H 0.15 1.59 8.05 -2.91 -0.02 1.56 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.11 2.99 7.68 -2.91 -0.02 2.97 16 Total: -1.00 -68.67 348.28 4.72 -63.95 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.95 Total: 10.83 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 2.82 Total: -50.18 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.37 Total: -13.39 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.67 4.72 -63.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385370629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.350 kcal (2) G-P(sol) polarization free energy of solvation -68.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds