Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00211 * 2 1 4 4 C 1.52991 * 109.47020 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47255 * 65.00461 * 4 3 2 6 6 C 1.46906 * 110.99712 * 66.04169 * 5 4 3 7 7 C 1.47203 * 109.46664 * 193.95355 * 6 5 4 8 8 N 5.25284 * 118.56977 * 270.89253 * 2 1 3 9 9 C 1.46895 * 111.00298 * 189.99455 * 5 4 3 10 10 C 1.50697 * 109.47496 * 169.99979 * 9 5 4 11 11 C 1.38640 * 119.74952 * 270.30356 * 10 9 5 12 12 C 1.37613 * 120.24543 * 180.30058 * 11 10 9 13 13 C 1.40709 * 119.74954 * 359.42165 * 12 11 10 14 14 C 1.41391 * 120.24881 * 180.29949 * 13 12 11 15 15 H 1.08006 * 120.00159 * 24.38124 * 14 13 12 16 16 C 1.39949 * 120.00394 * 204.37955 * 14 13 12 17 17 N 1.30826 * 119.99793 * 17.83971 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 197.84214 * 16 14 13 19 19 H 1.48504 * 109.47163 * 59.99946 * 18 16 14 20 20 H 1.48493 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47268 * 300.00028 * 18 16 14 22 22 C 1.40717 * 119.50871 * 0.27696 * 13 12 11 23 23 C 1.37615 * 119.74803 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47138 * 299.99601 * 1 2 3 25 25 H 1.09001 * 109.47567 * 59.99445 * 1 2 3 26 26 H 1.09005 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46569 * 60.00256 * 3 2 1 28 28 H 1.09004 * 109.47143 * 300.00557 * 3 2 1 29 29 H 1.08997 * 109.47408 * 305.00288 * 4 3 2 30 30 H 1.09008 * 109.47149 * 185.00245 * 4 3 2 31 31 H 1.08997 * 109.47272 * 313.95271 * 6 5 4 32 32 H 1.08997 * 109.46973 * 73.95752 * 6 5 4 33 33 H 1.09008 * 109.46933 * 49.99670 * 9 5 4 34 34 H 1.09004 * 109.47382 * 290.00420 * 9 5 4 35 35 H 1.07998 * 119.87277 * 359.97438 * 11 10 9 36 36 H 1.08008 * 120.12380 * 179.69269 * 12 11 10 37 37 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.12753 * 180.02562 * 22 13 12 39 39 H 1.08003 * 119.88271 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 3.6948 1.4357 -2.4036 7 6 3.8328 0.6664 -3.6510 8 7 3.9410 0.0719 -4.6127 9 6 5.4025 0.2137 -1.1982 10 6 5.7611 -0.6348 -2.3908 11 6 5.6503 -2.0145 -2.3117 12 6 5.9808 -2.7995 -3.3926 13 6 6.4210 -2.1962 -4.5851 14 6 6.7574 -2.9923 -5.7041 15 1 6.3305 -3.9784 -5.8132 16 6 7.6434 -2.5026 -6.6704 17 7 8.4223 -1.4896 -6.3902 18 14 7.7138 -3.2953 -8.3604 19 1 6.3824 -3.1943 -9.0104 20 1 8.7250 -2.5963 -9.1933 21 1 8.0893 -4.7253 -8.2211 22 6 6.5236 -0.7946 -4.6559 23 6 6.1927 -0.0295 -3.5610 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8465 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9786 2.1765 0.0890 31 1 2.6785 1.8217 -2.3254 32 1 4.3998 2.2670 -2.4096 33 1 5.6034 -0.3428 -0.2826 34 1 6.0004 1.1251 -1.2077 35 1 5.3082 -2.4751 -1.3967 36 1 5.8985 -3.8745 -3.3272 37 1 9.0367 -1.1504 -7.0598 38 1 6.8600 -0.3210 -5.5664 39 1 6.2702 1.0465 -3.6131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398951057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = 24.474602 kcal Electronic energy + Delta-G solvation = -20949.465870 eV Core-core repulsion = 17857.938968 eV Total energy + Delta-G solvation = -3091.526903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.96878 -37.75597 -36.40818 -35.08304 -33.61386 -30.96034 -29.53137 -29.13845 -27.81154 -26.47504 -25.36059 -23.02905 -21.29283 -20.86001 -19.76744 -17.55589 -17.20678 -16.54293 -16.02479 -15.53776 -15.21330 -14.93717 -14.31654 -14.13582 -13.96419 -13.31108 -13.18745 -12.85875 -12.54691 -12.32401 -12.04253 -11.82208 -11.75250 -11.60747 -11.54716 -11.22553 -11.19025 -11.03754 -10.92484 -10.55546 -10.40776 -10.03361 -9.63032 -9.48834 -9.28560 -8.99677 -8.10807 -7.17744 -7.15532 -6.67462 -4.24469 2.77521 3.10812 3.13195 3.18617 3.21092 3.53958 3.74543 3.82845 4.00180 4.38518 4.70378 4.78670 4.98733 5.08748 5.16633 5.27643 5.31613 5.42460 5.52915 5.56005 5.65143 5.76639 5.85533 5.87730 5.97798 6.28604 6.40728 6.50011 7.01600 7.10265 7.15725 7.22716 7.31944 7.41789 7.50231 7.72711 7.99722 8.16204 8.22781 8.41597 8.53497 8.74763 9.00653 9.10057 10.26398 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.004284 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.011691 B = 6533.797306 C = 6618.473520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.062 3.938 4 C 0.056 3.944 5 N -0.522 5.522 6 C 0.156 3.844 7 C 0.192 3.808 8 N -0.388 5.388 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.062 4.062 12 C -0.233 4.233 13 C 0.123 3.877 14 C -0.461 4.461 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.795 5.795 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.142 4.142 23 C -0.094 4.094 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.279 0.721 38 H 0.112 0.888 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 8.961 11.081 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.015 4.015 4 C -0.072 4.072 5 N -0.248 5.248 6 C 0.026 3.974 7 C -0.127 4.127 8 N -0.066 5.066 9 C -0.006 4.006 10 C -0.225 4.225 11 C -0.081 4.081 12 C -0.252 4.252 13 C 0.120 3.880 14 C -0.490 4.490 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.420 5.420 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.162 4.162 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.498 7.635 9.497 15.450 hybrid contribution 0.341 0.841 -0.258 0.943 sum -9.157 8.476 9.239 15.526 Atomic orbital electron populations 1.22713 0.81922 1.02629 0.99333 1.88066 1.18645 1.26960 1.95148 1.22648 0.93799 0.85402 0.99659 1.22135 0.93328 0.98359 0.93335 1.62059 1.20400 1.41770 1.00575 1.19328 1.02333 0.91682 0.84088 1.28198 0.94903 0.95013 0.94563 1.81319 1.06373 1.05654 1.13230 1.20836 0.84607 0.97073 0.98103 1.18737 1.15022 0.93354 0.95417 1.20257 0.98141 0.92900 0.96800 1.20936 1.12718 0.97264 0.94313 1.17546 0.87375 0.92111 0.90958 1.19575 1.22967 1.02221 1.04264 0.90682 1.25883 0.93651 0.94359 1.00102 1.69824 1.15727 1.21684 1.34802 0.86404 0.78919 0.80010 0.81587 1.18852 1.20392 1.19038 1.21043 1.04074 0.93620 0.97422 1.20465 1.00242 0.96483 0.94103 0.94670 0.94343 0.89828 0.93234 0.93222 0.89444 0.93170 0.88081 0.91556 0.91089 0.95298 0.89629 0.89424 0.90998 0.87008 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.71 10.65 -35.23 -0.38 -5.09 16 3 C 0.06 0.60 6.02 37.15 0.22 0.82 16 4 C 0.06 0.59 5.34 -3.83 -0.02 0.57 16 5 N -0.52 -7.61 4.50 -239.58 -1.08 -8.69 16 6 C 0.16 2.12 5.27 -6.61 -0.03 2.09 16 7 C 0.19 3.64 11.19 -20.77 -0.23 3.41 16 8 N -0.39 -8.93 15.57 42.14 0.66 -8.27 16 9 C 0.12 1.98 5.10 -4.98 -0.03 1.96 16 10 C -0.22 -4.86 4.10 -104.33 -0.43 -5.29 16 11 C -0.06 -1.46 9.67 -39.66 -0.38 -1.85 16 12 C -0.23 -6.11 9.80 -38.88 -0.38 -6.49 16 13 C 0.12 3.46 5.57 -106.83 -0.60 2.87 16 14 C -0.46 -13.04 9.05 -37.74 -0.34 -13.38 16 15 H 0.08 2.06 7.91 -52.48 -0.41 1.64 16 16 C 0.08 2.06 5.14 -17.34 -0.09 1.97 16 17 N -0.79 -21.53 10.95 55.55 0.61 -20.93 16 18 Si 0.91 19.84 29.59 -169.99 -5.03 14.81 16 19 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C -0.14 -3.87 7.35 -38.87 -0.29 -4.15 16 23 C -0.09 -2.22 5.76 -39.66 -0.23 -2.45 16 24 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 6.12 -51.93 -0.32 0.12 16 29 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 30 H 0.05 0.41 8.12 -51.92 -0.42 -0.01 16 31 H 0.10 1.07 5.91 -51.93 -0.31 0.76 16 32 H 0.07 0.77 7.99 -51.93 -0.41 0.35 16 33 H 0.07 1.11 7.87 -51.92 -0.41 0.70 16 34 H 0.03 0.44 7.95 -51.93 -0.41 0.03 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.09 2.21 8.06 -52.48 -0.42 1.78 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.11 3.24 6.16 -52.48 -0.32 2.91 16 39 H 0.08 1.66 7.66 -52.48 -0.40 1.26 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -32.35 323.55 -7.56 -39.91 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.51 Total: 1.89 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.71 Total: -18.52 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.19 Total: -37.88 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.35 -7.56 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398951057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.384 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds