Wall clock time and date at job start Mon Mar 30 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00211 * 2 1 4 4 C 1.52991 * 109.47020 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47255 * 65.00461 * 4 3 2 6 6 C 1.46906 * 110.99712 * 66.04169 * 5 4 3 7 7 C 1.47203 * 109.46664 * 193.95355 * 6 5 4 8 8 N 5.25284 * 118.56977 * 270.89253 * 2 1 3 9 9 C 1.46895 * 111.00298 * 189.99455 * 5 4 3 10 10 C 1.50697 * 109.47496 * 169.99979 * 9 5 4 11 11 C 1.38640 * 119.74952 * 270.30356 * 10 9 5 12 12 C 1.37613 * 120.24543 * 180.30058 * 11 10 9 13 13 C 1.40709 * 119.74954 * 359.42165 * 12 11 10 14 14 C 1.41391 * 120.24881 * 180.29949 * 13 12 11 15 15 H 1.08006 * 120.00159 * 24.38124 * 14 13 12 16 16 C 1.39949 * 120.00394 * 204.37955 * 14 13 12 17 17 N 1.30826 * 119.99793 * 17.83971 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 197.84214 * 16 14 13 19 19 H 1.48504 * 109.47163 * 59.99946 * 18 16 14 20 20 H 1.48493 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47268 * 300.00028 * 18 16 14 22 22 C 1.40717 * 119.50871 * 0.27696 * 13 12 11 23 23 C 1.37615 * 119.74803 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47138 * 299.99601 * 1 2 3 25 25 H 1.09001 * 109.47567 * 59.99445 * 1 2 3 26 26 H 1.09005 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46569 * 60.00256 * 3 2 1 28 28 H 1.09004 * 109.47143 * 300.00557 * 3 2 1 29 29 H 1.08997 * 109.47408 * 305.00288 * 4 3 2 30 30 H 1.09008 * 109.47149 * 185.00245 * 4 3 2 31 31 H 1.08997 * 109.47272 * 313.95271 * 6 5 4 32 32 H 1.08997 * 109.46973 * 73.95752 * 6 5 4 33 33 H 1.09008 * 109.46933 * 49.99670 * 9 5 4 34 34 H 1.09004 * 109.47382 * 290.00420 * 9 5 4 35 35 H 1.07998 * 119.87277 * 359.97438 * 11 10 9 36 36 H 1.08008 * 120.12380 * 179.69269 * 12 11 10 37 37 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.12753 * 180.02562 * 22 13 12 39 39 H 1.08003 * 119.88271 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 3.6948 1.4357 -2.4036 7 6 3.8328 0.6664 -3.6510 8 7 3.9410 0.0719 -4.6127 9 6 5.4025 0.2137 -1.1982 10 6 5.7611 -0.6348 -2.3908 11 6 5.6503 -2.0145 -2.3117 12 6 5.9808 -2.7995 -3.3926 13 6 6.4210 -2.1962 -4.5851 14 6 6.7574 -2.9923 -5.7041 15 1 6.3305 -3.9784 -5.8132 16 6 7.6434 -2.5026 -6.6704 17 7 8.4223 -1.4896 -6.3902 18 14 7.7138 -3.2953 -8.3604 19 1 6.3824 -3.1943 -9.0104 20 1 8.7250 -2.5963 -9.1933 21 1 8.0893 -4.7253 -8.2211 22 6 6.5236 -0.7946 -4.6559 23 6 6.1927 -0.0295 -3.5610 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8465 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9786 2.1765 0.0890 31 1 2.6785 1.8217 -2.3254 32 1 4.3998 2.2670 -2.4096 33 1 5.6034 -0.3428 -0.2826 34 1 6.0004 1.1251 -1.2077 35 1 5.3082 -2.4751 -1.3967 36 1 5.8985 -3.8745 -3.3272 37 1 9.0367 -1.1504 -7.0598 38 1 6.8600 -0.3210 -5.5664 39 1 6.2702 1.0465 -3.6131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398951057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:25 Heat of formation + Delta-G solvation = 2.458157 kcal Electronic energy + Delta-G solvation = -20950.420575 eV Core-core repulsion = 17857.938968 eV Total energy + Delta-G solvation = -3092.481607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34943 -38.92924 -37.78042 -36.57795 -35.51651 -32.51112 -31.09214 -30.67740 -29.24660 -27.55670 -26.62239 -24.51506 -22.86355 -22.18569 -21.55702 -19.23133 -18.73649 -17.40988 -17.20165 -16.91508 -16.60535 -15.99393 -15.87525 -15.44754 -15.40633 -14.93385 -14.58918 -14.37287 -13.96931 -13.84823 -13.60915 -13.33779 -13.18999 -12.98605 -12.86380 -12.68277 -12.57130 -12.40955 -12.27441 -12.06582 -11.98800 -11.57188 -11.31910 -11.23036 -10.94928 -10.35790 -9.24502 -9.13012 -9.02289 -8.63950 -6.32422 0.94883 1.21004 1.30265 1.41729 1.47450 2.10555 2.17245 2.31637 2.71645 3.11534 3.28718 3.49344 3.84962 4.18025 4.23397 4.36304 4.39976 4.46737 4.51730 4.59275 4.64254 4.70564 4.73208 4.81283 4.87222 4.91825 4.98976 5.04622 5.11644 5.14305 5.39812 5.51977 5.72890 6.00387 6.06800 6.11794 6.24550 6.31045 6.43429 6.54868 6.73365 6.96340 7.08344 7.10854 8.31957 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.004284 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.011691 B = 6533.797306 C = 6618.473520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.542 5.542 6 C 0.151 3.849 7 C 0.213 3.787 8 N -0.471 5.471 9 C 0.124 3.876 10 C -0.200 4.200 11 C -0.072 4.072 12 C -0.255 4.255 13 C 0.089 3.911 14 C -0.510 4.510 15 H 0.065 0.935 16 C 0.036 3.964 17 N -0.827 5.827 18 Si 0.978 3.022 19 H -0.268 1.268 20 H -0.262 1.262 21 H -0.257 1.257 22 C -0.160 4.160 23 C -0.090 4.090 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.286 0.714 38 H 0.084 0.916 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 11.299 13.300 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.020 4.020 4 C -0.068 4.068 5 N -0.268 5.268 6 C 0.021 3.979 7 C -0.104 4.104 8 N -0.149 5.149 9 C -0.002 4.002 10 C -0.202 4.202 11 C -0.090 4.090 12 C -0.275 4.275 13 C 0.086 3.914 14 C -0.539 4.539 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.799 3.201 19 H -0.193 1.193 20 H -0.186 1.186 21 H -0.181 1.181 22 C -0.179 4.179 23 C -0.109 4.109 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.459 9.985 11.750 18.632 hybrid contribution 0.502 0.245 -0.712 0.905 sum -9.957 10.230 11.038 18.045 Atomic orbital electron populations 1.22809 0.80713 1.02837 1.00532 1.88010 1.20215 1.29057 1.95460 1.22840 0.93034 0.84591 1.01493 1.22269 0.94013 0.99797 0.90703 1.61800 1.18625 1.43761 1.02619 1.19807 1.05543 0.91308 0.81199 1.29421 0.92439 0.93602 0.94935 1.81390 1.09222 1.08337 1.15964 1.20772 0.86627 0.97273 0.95561 1.19311 1.11037 0.93383 0.96442 1.20584 0.97822 0.93893 0.96729 1.21121 1.13784 0.97558 0.95059 1.17833 0.88782 0.92918 0.91823 1.19784 1.25161 1.02564 1.06434 0.91708 1.26686 0.92595 0.94933 1.03553 1.69872 1.16305 1.22951 1.36183 0.85329 0.78908 0.79464 0.76439 1.19260 1.18556 1.18088 1.20878 1.05764 0.93550 0.97756 1.20664 0.99177 0.97297 0.93725 0.92637 0.93887 0.90309 0.90495 0.92170 0.89549 0.89621 0.84419 0.88235 0.89730 0.92895 0.87322 0.89925 0.90319 0.89774 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.11 10.65 -148.98 -1.59 -10.70 16 3 C 0.06 0.82 6.02 71.98 0.43 1.26 16 4 C 0.06 0.91 5.34 86.30 0.46 1.37 16 5 N -0.54 -13.33 4.50 -911.90 -4.10 -17.44 16 6 C 0.15 3.43 5.27 84.50 0.45 3.87 16 7 C 0.21 7.78 11.19 89.45 1.00 8.78 16 8 N -0.47 -21.97 15.57 20.00 0.31 -21.66 16 9 C 0.12 3.58 5.10 85.56 0.44 4.02 16 10 C -0.20 -8.37 4.10 -19.67 -0.08 -8.45 16 11 C -0.07 -3.35 9.67 22.22 0.21 -3.14 16 12 C -0.26 -13.98 9.80 22.73 0.22 -13.76 16 13 C 0.09 5.28 5.57 -21.29 -0.12 5.16 16 14 C -0.51 -30.72 9.05 23.46 0.21 -30.50 16 15 H 0.06 3.84 7.91 -2.91 -0.02 3.81 16 16 C 0.04 2.02 5.14 85.26 0.44 2.46 16 17 N -0.83 -46.76 10.95 21.83 0.24 -46.53 16 18 Si 0.98 42.29 29.59 68.60 2.03 44.32 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 C -0.16 -9.05 7.35 22.73 0.17 -8.89 16 23 C -0.09 -4.22 5.76 22.22 0.13 -4.09 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.73 6.12 -2.39 -0.01 0.72 16 29 H 0.09 1.41 7.93 -2.39 -0.02 1.39 16 30 H 0.09 0.80 8.12 -2.38 -0.02 0.78 16 31 H 0.14 2.17 5.91 -2.39 -0.01 2.16 16 32 H 0.10 1.70 7.99 -2.39 -0.02 1.68 16 33 H 0.08 2.26 7.87 -2.38 -0.02 2.25 16 34 H 0.05 1.31 7.95 -2.38 -0.02 1.30 16 35 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.08 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 38 H 0.08 5.16 6.16 -2.91 -0.02 5.14 16 39 H 0.10 4.08 7.66 -2.91 -0.02 4.06 16 Total: -1.00 -76.67 323.55 3.14 -73.53 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.04 Total: 18.68 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 5.21 Total: -40.21 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.55 Total: -85.62 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.59 Total: -10.70 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.67 3.14 -73.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398951057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.992 kcal (2) G-P(sol) polarization free energy of solvation -76.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds