Wall clock time and date at job start Mon Mar 30 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47114 * 2 1 4 4 C 1.53001 * 109.47433 * 174.75635 * 3 2 1 5 5 H 1.08998 * 109.47006 * 305.56034 * 4 3 2 6 6 N 1.46895 * 109.47393 * 185.55443 * 4 3 2 7 7 C 1.46895 * 110.99909 * 86.04762 * 6 4 3 8 8 C 1.50703 * 109.47140 * 175.53465 * 7 6 4 9 9 H 1.08001 * 120.00110 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00099 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99942 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47451 * 89.99715 * 12 10 8 14 14 H 1.48500 * 109.47011 * 209.99827 * 12 10 8 15 15 H 1.48504 * 109.47190 * 329.99834 * 12 10 8 16 16 C 1.50706 * 109.46828 * 65.55194 * 4 3 2 17 17 N 1.30807 * 126.24388 * 74.69855 * 16 4 3 18 18 N 1.28683 * 110.28719 * 179.81763 * 17 16 4 19 19 C 1.32302 * 109.48331 * 0.44341 * 18 17 16 20 20 C 1.40820 * 133.46806 * 179.75285 * 19 18 17 21 21 C 1.36024 * 119.22915 * 179.97438 * 20 19 18 22 22 C 1.40544 * 119.74507 * 359.97438 * 21 20 19 23 23 C 1.34958 * 120.37014 * 359.97438 * 22 21 20 24 24 N 1.36063 * 126.24982 * 254.99846 * 16 4 3 25 25 H 1.09001 * 109.46769 * 60.00606 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47425 * 300.00437 * 1 2 3 28 28 H 1.09005 * 109.47255 * 119.99371 * 2 1 3 29 29 H 1.09001 * 109.47930 * 239.99551 * 2 1 3 30 30 H 1.09005 * 109.46925 * 294.75402 * 3 2 1 31 31 H 1.09002 * 109.47627 * 54.75500 * 3 2 1 32 32 H 1.00903 * 111.00184 * 209.99910 * 6 4 3 33 33 H 1.08999 * 109.47423 * 295.53302 * 7 6 4 34 34 H 1.09002 * 109.47658 * 55.53852 * 7 6 4 35 35 H 0.96996 * 119.99826 * 180.02562 * 11 10 8 36 36 H 1.07996 * 120.38982 * 0.02562 * 20 19 18 37 37 H 1.07992 * 120.12707 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.81568 * 180.02562 * 22 21 20 39 39 H 1.07993 * 119.74945 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5643 1.4446 0.1318 5 1 3.8535 0.8732 1.0138 6 7 4.0424 2.8271 0.2655 7 6 4.0072 3.2630 1.6679 8 6 4.6053 4.6417 1.7806 9 1 4.9742 5.1441 0.8985 10 6 4.6805 5.2622 3.0096 11 7 5.2019 6.4655 3.1078 12 14 4.0418 4.3937 4.5350 13 1 5.1366 3.5986 5.1470 14 1 3.5562 5.4015 5.5117 15 1 2.9246 3.4904 4.1591 16 6 4.1754 0.8181 -1.0951 17 7 4.2722 1.3684 -2.2778 18 7 4.8500 0.5632 -3.0986 19 6 5.1482 -0.5645 -2.4742 20 6 5.7680 -1.7620 -2.8802 21 6 5.9342 -2.7639 -1.9753 22 6 5.4880 -2.5910 -0.6538 23 6 4.8967 -1.4373 -0.2787 24 7 4.7221 -0.4252 -1.1761 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.7554 1.9285 -0.9333 31 1 1.6020 1.9828 0.8393 32 1 4.9687 2.9285 -0.1215 33 1 2.9744 3.2855 2.0156 34 1 4.5814 2.5669 2.2793 35 1 5.2552 6.9019 3.9725 36 1 6.1081 -1.8834 -3.8981 37 1 6.4073 -3.6885 -2.2711 38 1 5.6198 -3.3855 0.0657 39 1 4.5580 -1.3151 0.7394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411513137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:14 Heat of formation + Delta-G solvation = 101.564252 kcal Electronic energy + Delta-G solvation = -20996.352696 eV Core-core repulsion = 17940.461403 eV Total energy + Delta-G solvation = -3055.891293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.54720 -38.32028 -37.13802 -34.13937 -33.92216 -32.41288 -31.26507 -30.07008 -28.23163 -26.53606 -24.34928 -23.87726 -23.21307 -21.86532 -21.30040 -19.96852 -18.18260 -17.36024 -16.82140 -16.57986 -16.06545 -15.43436 -15.14985 -14.81968 -14.30626 -13.96795 -13.74879 -13.20656 -12.84195 -12.72082 -12.60367 -12.34599 -12.14015 -12.08771 -11.55189 -11.48382 -11.38179 -11.11886 -10.99090 -10.81777 -10.62395 -10.49743 -10.30330 -9.87265 -9.60268 -9.32143 -8.65099 -8.14608 -7.66214 -6.09343 -4.08213 0.44600 0.99987 2.21624 2.74491 3.21198 3.23118 3.31382 3.32455 3.94171 4.26510 4.31197 4.36830 4.51647 4.58280 4.69217 4.89457 4.99755 5.10908 5.20783 5.22382 5.32324 5.37007 5.59568 5.68537 5.71807 5.80914 5.83444 5.86550 5.94241 6.00114 6.14798 6.17084 6.34315 6.53007 6.64007 6.78725 6.90592 7.50039 7.76736 8.17396 8.57127 8.64431 8.99752 9.50969 11.03918 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004992 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.728818 B = 5607.923659 C = 6053.067065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.105 4.105 4 C 0.179 3.821 5 H 0.050 0.950 6 N -0.659 5.659 7 C 0.165 3.835 8 C -0.519 4.519 9 H 0.081 0.919 10 C 0.071 3.929 11 N -0.897 5.897 12 Si 0.877 3.123 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.266 1.266 16 C 0.157 3.843 17 N -0.223 5.223 18 N -0.291 5.291 19 C 0.181 3.819 20 C -0.076 4.076 21 C -0.094 4.094 22 C -0.144 4.144 23 C 0.071 3.929 24 N -0.390 5.390 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.344 0.656 33 H 0.032 0.968 34 H -0.021 1.021 35 H 0.265 0.735 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -23.020 -5.644 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.144 4.144 4 C 0.066 3.934 5 H 0.067 0.933 6 N -0.291 5.291 7 C 0.038 3.962 8 C -0.557 4.557 9 H 0.099 0.901 10 C -0.132 4.132 11 N -0.535 5.535 12 Si 0.704 3.296 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.191 1.191 16 C -0.106 4.106 17 N -0.062 5.062 18 N -0.136 5.136 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.166 4.166 23 C -0.051 4.051 24 N -0.071 5.071 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.050 0.950 34 H -0.003 1.003 35 H 0.074 0.926 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.242 -21.339 -6.804 22.631 hybrid contribution 0.692 -1.821 2.327 3.035 sum -2.550 -23.160 -4.477 23.727 Atomic orbital electron populations 1.21718 0.95399 1.01186 1.02245 1.21555 0.96460 0.97368 1.00854 1.21661 0.92476 0.95843 1.04397 1.20001 0.95127 0.90849 0.87450 0.93282 1.60586 1.31676 1.15242 1.21592 1.20138 0.96748 0.96130 0.83228 1.21026 1.39795 0.99139 0.95718 0.90065 1.24889 0.94824 0.94755 0.98686 1.69893 1.45065 1.13640 1.24950 0.86845 0.79686 0.79750 0.83339 1.20407 1.21015 1.19074 1.25228 1.03647 0.82197 0.99507 1.74334 1.12144 1.22311 0.97402 1.75036 1.16398 0.98360 1.23842 1.22376 1.03495 0.98711 0.82206 1.20266 0.99040 0.88877 1.01601 1.21135 0.98814 0.99309 0.92562 1.20891 1.00903 0.97000 0.97782 1.21688 1.00720 0.87308 0.95432 1.43812 1.39415 1.12879 1.10948 0.92546 0.93140 0.92376 0.92512 0.93162 0.90225 0.90059 0.83689 0.95021 1.00314 0.92555 0.82783 0.83720 0.82900 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.53 5.67 -26.73 -0.15 -1.68 16 3 C -0.10 -1.62 4.92 -26.73 -0.13 -1.75 16 4 C 0.18 3.03 2.56 -68.86 -0.18 2.86 16 5 H 0.05 0.77 7.28 -51.93 -0.38 0.40 16 6 N -0.66 -13.95 6.32 -109.22 -0.69 -14.64 16 7 C 0.16 3.91 4.35 -4.98 -0.02 3.89 16 8 C -0.52 -14.79 9.82 -34.44 -0.34 -15.12 16 9 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 12 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 16 C 0.16 2.64 5.72 -154.22 -0.88 1.76 16 17 N -0.22 -4.31 12.19 32.95 0.40 -3.91 16 18 N -0.29 -5.25 12.31 31.14 0.38 -4.87 16 19 C 0.18 2.64 7.92 -156.07 -1.24 1.41 16 20 C -0.08 -0.76 10.11 -39.40 -0.40 -1.16 16 21 C -0.09 -0.67 10.07 -39.51 -0.40 -1.07 16 22 C -0.14 -1.04 9.98 -39.88 -0.40 -1.44 16 23 C 0.07 0.71 10.80 -16.69 -0.18 0.53 16 24 N -0.39 -5.47 2.95 -59.73 -0.18 -5.64 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.30 7.49 -51.93 -0.39 0.91 16 32 H 0.34 7.59 8.27 -39.29 -0.32 7.26 16 33 H 0.03 0.76 6.58 -51.93 -0.34 0.41 16 34 H -0.02 -0.48 7.37 -51.93 -0.38 -0.86 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.17 1.31 7.76 -52.49 -0.41 0.90 16 LS Contribution 326.81 15.07 4.93 4.93 Total: -1.00 -33.86 326.81 -8.68 -42.55 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.59 Total: 2.97 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -4.04 Total: -11.08 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.69 Total: -55.79 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.86 -8.68 -42.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411513137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.110 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds