Wall clock time and date at job start Mon Mar 30 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47114 * 2 1 4 4 C 1.53001 * 109.47433 * 174.75635 * 3 2 1 5 5 H 1.08998 * 109.47006 * 305.56034 * 4 3 2 6 6 N 1.46895 * 109.47393 * 185.55443 * 4 3 2 7 7 C 1.46895 * 110.99909 * 86.04762 * 6 4 3 8 8 C 1.50703 * 109.47140 * 175.53465 * 7 6 4 9 9 H 1.08001 * 120.00110 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00099 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99942 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47451 * 89.99715 * 12 10 8 14 14 H 1.48500 * 109.47011 * 209.99827 * 12 10 8 15 15 H 1.48504 * 109.47190 * 329.99834 * 12 10 8 16 16 C 1.50706 * 109.46828 * 65.55194 * 4 3 2 17 17 N 1.30807 * 126.24388 * 74.69855 * 16 4 3 18 18 N 1.28683 * 110.28719 * 179.81763 * 17 16 4 19 19 C 1.32302 * 109.48331 * 0.44341 * 18 17 16 20 20 C 1.40820 * 133.46806 * 179.75285 * 19 18 17 21 21 C 1.36024 * 119.22915 * 179.97438 * 20 19 18 22 22 C 1.40544 * 119.74507 * 359.97438 * 21 20 19 23 23 C 1.34958 * 120.37014 * 359.97438 * 22 21 20 24 24 N 1.36063 * 126.24982 * 254.99846 * 16 4 3 25 25 H 1.09001 * 109.46769 * 60.00606 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47425 * 300.00437 * 1 2 3 28 28 H 1.09005 * 109.47255 * 119.99371 * 2 1 3 29 29 H 1.09001 * 109.47930 * 239.99551 * 2 1 3 30 30 H 1.09005 * 109.46925 * 294.75402 * 3 2 1 31 31 H 1.09002 * 109.47627 * 54.75500 * 3 2 1 32 32 H 1.00903 * 111.00184 * 209.99910 * 6 4 3 33 33 H 1.08999 * 109.47423 * 295.53302 * 7 6 4 34 34 H 1.09002 * 109.47658 * 55.53852 * 7 6 4 35 35 H 0.96996 * 119.99826 * 180.02562 * 11 10 8 36 36 H 1.07996 * 120.38982 * 0.02562 * 20 19 18 37 37 H 1.07992 * 120.12707 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.81568 * 180.02562 * 22 21 20 39 39 H 1.07993 * 119.74945 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5643 1.4446 0.1318 5 1 3.8535 0.8732 1.0138 6 7 4.0424 2.8271 0.2655 7 6 4.0072 3.2630 1.6679 8 6 4.6053 4.6417 1.7806 9 1 4.9742 5.1441 0.8985 10 6 4.6805 5.2622 3.0096 11 7 5.2019 6.4655 3.1078 12 14 4.0418 4.3937 4.5350 13 1 5.1366 3.5986 5.1470 14 1 3.5562 5.4015 5.5117 15 1 2.9246 3.4904 4.1591 16 6 4.1754 0.8181 -1.0951 17 7 4.2722 1.3684 -2.2778 18 7 4.8500 0.5632 -3.0986 19 6 5.1482 -0.5645 -2.4742 20 6 5.7680 -1.7620 -2.8802 21 6 5.9342 -2.7639 -1.9753 22 6 5.4880 -2.5910 -0.6538 23 6 4.8967 -1.4373 -0.2787 24 7 4.7221 -0.4252 -1.1761 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.7554 1.9285 -0.9333 31 1 1.6020 1.9828 0.8393 32 1 4.9687 2.9285 -0.1215 33 1 2.9744 3.2855 2.0156 34 1 4.5814 2.5669 2.2793 35 1 5.2552 6.9019 3.9725 36 1 6.1081 -1.8834 -3.8981 37 1 6.4073 -3.6885 -2.2711 38 1 5.6198 -3.3855 0.0657 39 1 4.5580 -1.3151 0.7394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411513137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:06 Heat of formation + Delta-G solvation = 78.391626 kcal Electronic energy + Delta-G solvation = -20997.357537 eV Core-core repulsion = 17940.461403 eV Total energy + Delta-G solvation = -3056.896134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -44.59831 -39.21862 -38.49840 -35.65715 -34.83799 -34.30067 -32.27367 -31.32076 -29.47245 -28.16551 -25.21961 -25.11241 -24.20712 -23.21747 -22.80824 -21.16148 -19.32583 -18.92993 -18.03393 -17.67842 -17.13065 -16.47080 -16.37591 -16.05063 -15.70346 -15.43740 -15.03129 -14.65264 -14.36280 -13.78906 -13.64748 -13.52228 -13.44305 -13.13997 -12.81886 -12.68439 -12.51210 -12.41781 -12.29586 -12.10693 -11.91440 -11.76122 -11.64579 -11.52088 -11.46666 -10.83236 -10.57995 -9.32207 -9.08384 -8.30789 -6.37338 -0.29016 0.10465 1.24660 1.34443 1.38576 1.49648 1.63522 2.34096 2.38766 2.95296 3.02870 3.18050 3.34321 3.52044 3.75832 3.88673 3.98188 4.04046 4.10427 4.17491 4.25277 4.57329 4.64729 4.69711 4.74672 4.81086 4.83220 4.97698 4.99315 5.02527 5.03431 5.16960 5.19051 5.26827 5.36944 5.47063 5.50155 5.84641 5.92755 6.36720 6.53535 6.70448 7.27087 7.49911 8.86505 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004992 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.728818 B = 5607.923659 C = 6053.067065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.100 4.100 4 C 0.184 3.816 5 H 0.071 0.929 6 N -0.675 5.675 7 C 0.179 3.821 8 C -0.535 4.535 9 H 0.029 0.971 10 C 0.007 3.993 11 N -0.949 5.949 12 Si 0.956 3.044 13 H -0.263 1.263 14 H -0.282 1.282 15 H -0.240 1.240 16 C 0.141 3.859 17 N -0.271 5.271 18 N -0.348 5.348 19 C 0.181 3.819 20 C -0.108 4.108 21 C -0.059 4.059 22 C -0.120 4.120 23 C 0.038 3.962 24 N -0.388 5.388 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.333 0.667 33 H 0.038 0.962 34 H -0.006 1.006 35 H 0.268 0.732 36 H 0.171 0.829 37 H 0.193 0.807 38 H 0.202 0.798 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -28.232 -3.464 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.140 4.140 4 C 0.072 3.928 5 H 0.089 0.911 6 N -0.306 5.306 7 C 0.051 3.949 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.190 4.190 11 N -0.589 5.589 12 Si 0.778 3.222 13 H -0.188 1.188 14 H -0.208 1.208 15 H -0.163 1.163 16 C -0.123 4.123 17 N -0.109 5.109 18 N -0.194 5.194 19 C -0.069 4.069 20 C -0.129 4.129 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.083 4.083 24 N -0.068 5.068 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.056 0.944 34 H 0.012 0.988 35 H 0.077 0.923 36 H 0.189 0.811 37 H 0.211 0.789 38 H 0.219 0.781 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.512 -26.581 -4.648 27.212 hybrid contribution 0.906 -0.365 1.562 1.842 sum -2.605 -26.947 -3.086 27.248 Atomic orbital electron populations 1.21716 0.94253 1.02438 1.02004 1.21459 0.97334 0.94837 1.01432 1.21620 0.91575 0.98047 1.02715 1.19995 0.95749 0.88573 0.88513 0.91136 1.60461 1.31111 1.18984 1.20056 1.19872 0.96484 0.93571 0.84955 1.21302 1.40200 1.01483 0.94334 0.95293 1.25964 0.94793 0.95455 1.02831 1.70072 1.46753 1.15846 1.26238 0.85596 0.80021 0.78822 0.77777 1.18809 1.20750 1.16346 1.24859 1.05120 0.83682 0.98669 1.74157 1.13701 1.24183 0.98872 1.74872 1.19325 1.00234 1.24986 1.23018 1.02538 0.98973 0.82325 1.20695 1.00502 0.88134 1.03576 1.21796 0.95326 0.99525 0.91664 1.21594 0.97383 0.96544 0.98569 1.22443 1.02447 0.87407 0.96051 1.43839 1.38779 1.12690 1.11461 0.93514 0.91093 0.91975 0.90263 0.94047 0.92786 0.90631 0.84929 0.94373 0.98833 0.92268 0.81116 0.78943 0.78149 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.11 -2.57 5.67 30.59 0.17 -2.40 16 3 C -0.10 -3.11 4.92 30.60 0.15 -2.96 16 4 C 0.18 6.26 2.56 44.17 0.11 6.37 16 5 H 0.07 2.08 7.28 -2.39 -0.02 2.06 16 6 N -0.67 -29.71 6.32 -499.47 -3.16 -32.87 16 7 C 0.18 8.52 4.35 85.56 0.37 8.89 16 8 C -0.54 -31.76 9.82 25.60 0.25 -31.51 16 9 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 10 C 0.01 0.41 5.47 84.66 0.46 0.88 16 11 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 12 Si 0.96 42.94 27.47 68.60 1.88 44.83 16 13 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 16 C 0.14 4.88 5.72 137.71 0.79 5.67 16 17 N -0.27 -11.21 12.19 -49.68 -0.61 -11.82 16 18 N -0.35 -13.38 12.31 -55.40 -0.68 -14.07 16 19 C 0.18 5.26 7.92 134.07 1.06 6.32 16 20 C -0.11 -1.89 10.11 22.39 0.23 -1.66 16 21 C -0.06 -0.52 10.07 22.32 0.22 -0.30 16 22 C -0.12 -1.03 9.98 22.08 0.22 -0.81 16 23 C 0.04 0.62 10.80 83.23 0.90 1.52 16 24 N -0.39 -10.53 2.95 -342.88 -1.01 -11.54 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.03 7.57 -2.39 -0.02 1.01 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 2.38 7.49 -2.39 -0.02 2.37 16 32 H 0.33 15.72 8.27 -89.69 -0.74 14.98 16 33 H 0.04 1.77 6.58 -2.39 -0.02 1.76 16 34 H -0.01 -0.26 7.37 -2.39 -0.02 -0.28 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 38 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 39 H 0.19 2.13 7.76 -2.91 -0.02 2.11 16 Total: -1.00 -81.95 326.81 2.64 -79.32 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.25 Total: 18.25 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.66 Total: -12.18 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -5.16 Total: -130.22 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -81.95 2.64 -79.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411513137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.708 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds