Wall clock time and date at job start Mon Mar 30 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31895 * 119.91022 * 2 1 4 4 N 1.28268 * 122.67582 * 180.02562 * 3 2 1 5 5 C 1.32587 * 122.19778 * 0.02562 * 4 3 2 6 6 N 1.38467 * 120.28072 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99764 * 0.27840 * 6 5 4 8 8 C 1.52996 * 109.47059 * 179.72351 * 7 6 5 9 9 C 1.53010 * 109.47146 * 299.99645 * 8 7 6 10 10 C 1.53000 * 109.47166 * 59.99736 * 8 7 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 8 7 6 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99545 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00173 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47173 * 59.99901 * 15 13 11 17 17 H 1.48497 * 109.47169 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47241 * 299.99984 * 15 13 11 19 19 C 1.40764 * 119.44129 * 0.27124 * 5 4 3 20 20 C 1.43201 * 121.20013 * 179.72484 * 19 5 4 21 21 N 4.80789 * 136.66415 * 180.31831 * 2 1 3 22 22 C 1.38453 * 119.90608 * 180.02562 * 2 1 3 23 23 C 1.50706 * 121.05314 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47208 * 89.99871 * 1 2 3 25 25 H 1.09001 * 109.47396 * 210.00305 * 1 2 3 26 26 H 1.09003 * 109.46673 * 330.00336 * 1 2 3 27 27 H 0.97001 * 119.99791 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.46963 * 299.72147 * 7 6 5 29 29 H 1.08994 * 109.47567 * 59.72299 * 7 6 5 30 30 H 1.09003 * 109.46863 * 59.99870 * 9 8 7 31 31 H 1.09001 * 109.47172 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.46753 * 300.00454 * 9 8 7 33 33 H 1.08990 * 109.47258 * 60.00092 * 10 8 7 34 34 H 1.09001 * 109.46739 * 180.02562 * 10 8 7 35 35 H 1.08999 * 109.47407 * 299.99599 * 10 8 7 36 36 H 0.97004 * 119.99855 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.46868 * 89.99806 * 23 22 2 38 38 H 1.09000 * 109.46802 * 210.00029 * 23 22 2 39 39 H 1.09003 * 109.47103 * 329.99951 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1647 1.1433 0.0000 4 7 3.4458 1.2052 -0.0005 5 6 4.2056 0.1186 -0.0015 6 7 5.5857 0.2316 -0.0025 7 6 6.2121 1.5559 0.0037 8 6 7.7341 1.4001 0.0080 9 6 8.1641 0.6267 1.2563 10 6 8.1720 0.6346 -1.2422 11 6 8.3786 2.7623 0.0138 12 1 7.7641 3.6504 0.0139 13 6 9.7527 2.8749 0.0190 14 7 10.5011 1.7934 0.0194 15 14 10.5515 4.5634 0.0254 16 1 10.1260 5.3077 1.2379 17 1 12.0288 4.4122 0.0310 18 1 10.1348 5.3128 -1.1870 19 6 3.5975 -1.1509 -0.0079 20 6 4.3817 -2.3491 -0.0151 21 7 5.0040 -3.2995 -0.0183 22 6 2.1973 -1.2002 -0.0005 23 6 1.4657 -2.5177 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 6.1376 -0.5660 -0.0029 28 1 5.9058 2.1069 -0.8856 29 1 5.9002 2.1013 0.8943 30 1 7.6979 -0.3586 1.2517 31 1 9.2484 0.5153 1.2592 32 1 7.8520 1.1721 2.1470 33 1 7.8658 1.1855 -2.1314 34 1 9.2563 0.5232 -1.2388 35 1 7.7060 -0.3507 -1.2468 36 1 11.4678 1.8726 0.0234 37 1 1.2889 -2.8351 -1.0282 38 1 2.0676 -3.2675 0.5129 39 1 0.5114 -2.4035 0.5137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413401651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:24 Heat of formation + Delta-G solvation = 61.118402 kcal Electronic energy + Delta-G solvation = -20802.691279 eV Core-core repulsion = 17745.046122 eV Total energy + Delta-G solvation = -3057.645157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25487 -39.06545 -38.07234 -36.49887 -35.49378 -33.77389 -32.21676 -29.69843 -28.56040 -27.66857 -27.47409 -26.38096 -25.40908 -22.95762 -20.89290 -19.80553 -18.79340 -18.73827 -17.65342 -16.77912 -16.62854 -15.77443 -15.30937 -15.24802 -14.91511 -14.79641 -14.64509 -14.29522 -14.17438 -14.10490 -13.89194 -13.63546 -13.53789 -13.27225 -13.14941 -12.78482 -12.64768 -12.60820 -12.38700 -12.16246 -11.95742 -11.76775 -11.35361 -11.23579 -10.81339 -10.68889 -10.62442 -10.40534 -9.04170 -8.03398 -6.19919 -0.71566 0.13391 1.31694 1.45516 1.46172 1.52920 1.75487 1.97879 2.46468 2.51432 2.63159 3.08911 3.20726 3.48614 3.66035 3.77562 4.21504 4.26008 4.37657 4.50052 4.63382 4.64514 4.78367 4.82809 4.93897 4.95517 5.00030 5.02284 5.06995 5.12014 5.20641 5.36422 5.52327 5.58002 5.64874 5.86027 6.05048 6.13255 6.18117 6.30938 6.41607 6.85139 7.48280 7.83224 8.95888 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.004340 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.518817 B = 6449.592041 C = 7230.423781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.004 3.996 3 N -0.201 5.201 4 N -0.330 5.330 5 C 0.372 3.628 6 N -0.692 5.692 7 C 0.157 3.843 8 C 0.049 3.951 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.524 4.524 12 H 0.053 0.947 13 C 0.026 3.974 14 N -0.904 5.904 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.120 4.120 20 C 0.276 3.724 21 N -0.427 5.427 22 C 0.033 3.967 23 C -0.125 4.125 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.407 0.593 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.259 0.741 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 -7.833 -0.107 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 N -0.044 5.044 4 N -0.183 5.183 5 C 0.126 3.874 6 N -0.322 5.322 7 C 0.034 3.966 8 C 0.048 3.952 9 C -0.178 4.178 10 C -0.177 4.177 11 C -0.563 4.563 12 H 0.072 0.928 13 C -0.174 4.174 14 N -0.542 5.542 15 Si 0.776 3.224 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.140 4.140 20 C -0.039 4.039 21 N -0.104 5.104 22 C 0.019 3.981 23 C -0.181 4.181 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.098 0.902 27 H 0.245 0.755 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.958 -7.478 -0.111 20.380 hybrid contribution 1.350 -0.354 0.003 1.395 sum -17.609 -7.833 -0.108 19.273 Atomic orbital electron populations 1.20788 0.83903 1.05311 1.04827 1.23025 1.00848 0.88005 1.02807 1.72524 1.00345 1.26672 1.04830 1.73231 0.99559 1.23841 1.21687 1.20213 0.87456 0.90046 0.89696 1.44893 1.01135 1.10528 1.75677 1.21409 0.93543 0.81462 1.00232 1.18389 0.88877 0.95115 0.92791 1.21673 1.02623 0.96022 0.97446 1.21668 1.02615 0.96034 0.97432 1.21208 0.91774 0.92085 1.51195 0.92832 1.25518 0.97763 0.99500 0.94612 1.69926 1.04888 1.28697 1.50729 0.85750 0.77116 0.80929 0.78641 1.19985 1.21209 1.19972 1.16448 0.93222 0.86346 1.17945 1.25050 0.93187 0.92425 0.93202 1.81305 1.08037 1.11150 1.09951 1.21327 0.89777 0.99422 0.87598 1.21215 1.01735 0.89588 1.05594 0.88635 0.87258 0.90221 0.75460 0.92931 0.92950 0.96093 0.91912 0.95680 0.95669 0.91932 0.96089 0.93112 0.87058 0.91167 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 9.81 71.23 0.70 -0.19 16 2 C 0.00 0.07 6.86 42.60 0.29 0.36 16 3 N -0.20 -5.87 11.39 -47.74 -0.54 -6.42 16 4 N -0.33 -11.42 10.74 -54.58 -0.59 -12.01 16 5 C 0.37 12.17 7.58 133.59 1.01 13.18 16 6 N -0.69 -25.05 5.03 -343.96 -1.73 -26.78 16 7 C 0.16 6.53 4.54 86.38 0.39 6.93 16 8 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 9 C -0.12 -5.59 8.08 71.99 0.58 -5.01 16 10 C -0.12 -5.58 8.08 71.98 0.58 -5.00 16 11 C -0.52 -27.54 8.01 25.60 0.21 -27.33 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 13 C 0.03 1.35 5.15 84.65 0.44 1.79 16 14 N -0.90 -49.19 9.35 21.45 0.20 -48.98 16 15 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C -0.12 -3.16 5.79 -20.96 -0.12 -3.28 16 20 C 0.28 7.59 12.95 88.33 1.14 8.73 16 21 N -0.43 -12.99 18.54 19.00 0.35 -12.64 16 22 C 0.03 0.62 5.96 -19.36 -0.12 0.51 16 23 C -0.13 -1.19 9.31 71.24 0.66 -0.53 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.11 0.37 6.04 -2.39 -0.01 0.36 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.41 14.63 5.10 -92.71 -0.47 14.16 16 28 H 0.05 2.26 8.14 -2.38 -0.02 2.25 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.02 0.86 6.86 -2.39 -0.02 0.84 16 31 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 32 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 35 H 0.02 0.86 6.86 -2.39 -0.02 0.84 16 36 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.81 7.26 -2.39 -0.02 0.79 16 39 H 0.12 0.39 6.06 -2.39 -0.01 0.38 16 Total: -1.00 -62.22 321.89 6.07 -56.15 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.61 Total: 13.58 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.74 Total: -7.56 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -2.31 Total: -106.83 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.22 6.07 -56.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413401651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.271 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds