Wall clock time and date at job start Mon Mar 30 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30175 * 125.74530 * 2 1 4 4 N 1.39990 * 109.70766 * 180.02562 * 3 2 1 5 5 C 1.46490 * 125.88111 * 180.02562 * 4 3 2 6 6 C 1.36903 * 108.23368 * 359.97438 * 4 3 2 7 7 N 1.32872 * 133.41202 * 180.02562 * 6 4 3 8 8 C 1.31646 * 121.80825 * 179.97438 * 7 6 4 9 9 C 1.38424 * 121.60127 * 359.96920 * 8 7 6 10 10 C 1.38938 * 119.44793 * 0.03243 * 9 8 7 11 11 N 1.38811 * 121.01578 * 180.02562 * 10 9 8 12 12 C 1.46493 * 120.00464 * 5.71014 * 11 10 9 13 13 C 1.52999 * 109.47347 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.47018 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47005 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99804 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00544 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46962 * 60.00300 * 19 17 15 21 21 H 1.48503 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47583 * 300.00348 * 19 17 15 23 23 C 1.40627 * 106.42580 * 0.25294 * 6 4 3 24 24 H 1.09002 * 109.47130 * 95.83602 * 1 2 3 25 25 H 1.08996 * 109.47166 * 215.83630 * 1 2 3 26 26 H 1.09000 * 109.46937 * 335.84037 * 1 2 3 27 27 H 1.09006 * 109.47162 * 269.97407 * 5 4 3 28 28 H 1.09003 * 109.47513 * 29.97448 * 5 4 3 29 29 H 1.09002 * 109.47469 * 149.97704 * 5 4 3 30 30 H 1.07998 * 119.20328 * 179.97438 * 8 7 6 31 31 H 1.07999 * 120.27164 * 180.02562 * 9 8 7 32 32 H 0.97011 * 119.99571 * 185.71386 * 11 10 9 33 33 H 1.09006 * 109.46990 * 60.00440 * 12 11 10 34 34 H 1.08997 * 109.47212 * 300.00694 * 12 11 10 35 35 H 1.08999 * 109.47224 * 299.99968 * 13 12 11 36 36 H 1.09007 * 109.47230 * 60.00528 * 13 12 11 37 37 H 1.08999 * 109.47115 * 300.00056 * 14 13 12 38 38 H 1.08996 * 109.47077 * 60.00521 * 14 13 12 39 39 H 0.96999 * 120.00751 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0565 0.0000 4 7 3.6129 0.6698 -0.0006 5 6 4.7660 1.5733 -0.0002 6 6 3.6654 -0.6982 -0.0004 7 7 4.6649 -1.5737 -0.0003 8 6 4.4497 -2.8725 0.0004 9 6 3.1680 -3.3954 0.0017 10 6 2.0785 -2.5331 0.0016 11 7 0.7794 -3.0221 0.0035 12 6 0.5386 -4.4614 0.1318 13 6 -0.9673 -4.7310 0.1050 14 6 -1.2187 -6.2343 0.2384 15 6 -2.7019 -6.4999 0.2114 16 1 -3.3958 -5.6786 0.1090 17 6 -3.1730 -7.7913 0.3175 18 7 -2.3282 -8.7914 0.4418 19 14 -5.0115 -8.1204 0.2849 20 1 -5.5783 -7.6362 -0.9996 21 1 -5.2556 -9.5795 0.4142 22 1 -5.6623 -7.4073 1.4131 23 6 2.3327 -1.1473 -0.0056 24 1 -0.3633 -0.1045 -1.0224 25 1 -0.3633 -0.8331 0.6016 26 1 -0.3633 0.9377 0.4206 27 1 5.0520 1.7978 -1.0279 28 1 4.5031 2.4978 0.5139 29 1 5.6009 1.0967 0.5134 30 1 5.2936 -3.5464 0.0000 31 1 3.0162 -4.4646 0.0027 32 1 0.0309 -2.4107 -0.0803 33 1 0.9549 -4.8169 1.0744 34 1 1.0158 -4.9849 -0.6966 35 1 -1.4449 -4.2075 0.9332 36 1 -1.3833 -4.3757 -0.8378 37 1 -0.7412 -6.7575 -0.5901 38 1 -0.8026 -6.5901 1.1809 39 1 -2.6596 -9.6999 0.5168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420588317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:50 Heat of formation + Delta-G solvation = 85.110277 kcal Electronic energy + Delta-G solvation = -20163.726772 eV Core-core repulsion = 17107.121981 eV Total energy + Delta-G solvation = -3056.604791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67989 -38.37000 -36.72054 -34.43648 -33.45901 -31.78777 -30.15515 -29.95308 -29.30148 -26.52370 -25.60628 -23.51738 -23.41360 -21.62564 -20.60278 -19.65976 -17.68414 -17.13895 -16.54145 -16.14928 -15.95923 -15.25515 -14.93902 -14.56778 -14.14624 -14.01223 -13.78914 -13.45930 -13.33107 -12.85943 -12.74576 -12.45722 -12.39920 -12.00398 -11.82289 -11.77714 -11.07218 -10.91163 -10.76558 -10.71674 -10.65631 -9.90663 -9.59150 -9.35965 -9.21971 -9.17613 -8.54203 -8.43480 -7.50997 -6.08456 -4.11753 0.98068 1.55123 2.17816 2.47918 3.28150 3.32964 3.33492 3.37585 3.92650 4.13826 4.39169 4.46904 4.63511 4.85783 5.02524 5.09631 5.14047 5.27702 5.30882 5.33240 5.38779 5.45685 5.55240 5.58842 5.69036 5.84324 5.97901 6.04231 6.15214 6.44461 6.45213 6.59031 6.86260 6.94355 7.20299 7.52615 7.53979 7.62595 7.65845 7.89334 8.12388 8.30537 8.94361 9.53029 11.02768 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.003194 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.548187 B = 8763.364668 C = 9533.503336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.120 3.880 3 N -0.266 5.266 4 N -0.398 5.398 5 C 0.118 3.882 6 C 0.350 3.650 7 N -0.559 5.559 8 C 0.210 3.790 9 C -0.309 4.309 10 C 0.334 3.666 11 N -0.717 5.717 12 C 0.112 3.888 13 C -0.122 4.122 14 C 0.026 3.974 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.291 4.291 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.613 16.311 -0.905 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 N -0.082 5.082 4 N -0.187 5.187 5 C -0.023 4.023 6 C 0.110 3.890 7 N -0.280 5.280 8 C 0.044 3.956 9 C -0.338 4.338 10 C 0.214 3.786 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.306 4.306 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.239 0.761 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.557 17.686 -0.865 21.708 hybrid contribution -1.974 -1.234 -0.054 2.328 sum 10.584 16.453 -0.919 19.584 Atomic orbital electron populations 1.20399 0.86281 1.04028 1.03598 1.22086 0.96607 0.89134 0.97723 1.76738 0.86102 1.22511 1.22855 1.48037 1.04494 1.01651 1.64558 1.21698 0.84592 0.93172 1.02846 1.18845 0.89670 0.85884 0.94621 1.66755 1.33215 1.02449 1.25559 1.22309 0.95821 0.89300 0.88131 1.21342 0.92040 1.00590 1.19869 1.17557 0.86190 0.89329 0.85565 1.45288 1.04032 1.09168 1.75792 1.21842 0.99456 0.78323 1.01424 1.21891 0.90982 1.02028 1.01104 1.19016 0.96957 0.87673 0.97542 1.21154 0.92010 0.92502 1.50652 0.92682 1.25011 0.97854 0.96318 0.95149 1.69936 1.34179 0.99327 1.49849 0.86642 0.85496 0.77143 0.78635 1.20212 1.21227 1.20208 1.18891 0.94781 0.93014 1.23869 0.89588 0.90169 0.89865 0.91500 0.89801 0.89378 0.82182 0.84226 0.76134 0.91618 0.91616 0.92613 0.92593 0.96248 0.96253 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.49 36.01 0.34 -0.49 16 2 C 0.12 1.62 7.24 -82.11 -0.59 1.03 16 3 N -0.27 -3.80 12.44 33.87 0.42 -3.38 16 4 N -0.40 -5.51 4.06 -67.25 -0.27 -5.79 16 5 C 0.12 1.11 11.48 59.84 0.69 1.80 16 6 C 0.35 5.31 7.99 -156.06 -1.25 4.06 16 7 N -0.56 -8.07 10.39 -12.44 -0.13 -8.20 16 8 C 0.21 2.61 11.14 -17.56 -0.20 2.41 16 9 C -0.31 -4.08 9.37 -39.25 -0.37 -4.45 16 10 C 0.33 4.76 6.72 -83.44 -0.56 4.20 16 11 N -0.72 -9.75 5.71 -58.32 -0.33 -10.08 16 12 C 0.11 1.70 5.00 -4.05 -0.02 1.68 16 13 C -0.12 -2.21 5.27 -26.73 -0.14 -2.36 16 14 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.29 -4.32 6.11 -106.80 -0.65 -4.97 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.74 6.37 -51.93 -0.33 0.41 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.14 1.68 6.86 -52.49 -0.36 1.32 16 32 H 0.40 4.92 5.49 -40.81 -0.22 4.70 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -32.12 328.10 -8.46 -40.58 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.51 Total: 0.78 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.30 Total: -9.56 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.42 Total: -52.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.12 -8.46 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420588317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.691 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds