Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46803 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99833 * 180.02562 * 12 11 10 14 14 H 1.09003 * 108.42273 * 327.36490 * 13 12 11 15 15 C 1.51587 * 108.49429 * 209.87535 * 13 12 11 16 16 C 1.53202 * 110.85590 * 170.70367 * 15 13 12 17 17 C 1.51358 * 108.40603 * 85.45898 * 16 15 13 18 18 C 1.38622 * 119.75236 * 109.16000 * 17 16 15 19 19 C 1.38766 * 117.95502 * 179.62028 * 18 17 16 20 20 C 1.38230 * 119.08584 * 0.02562 * 19 18 17 21 21 N 1.31888 * 120.96531 * 0.09545 * 20 19 18 22 22 C 1.32187 * 121.38830 * 359.97438 * 21 20 19 23 23 C 1.51553 * 119.31773 * 179.85104 * 22 21 20 24 24 C 1.51586 * 108.49050 * 85.00079 * 13 12 11 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 27 27 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 28 28 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 29 29 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 31 31 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 32 32 H 1.00903 * 110.99871 * 56.05241 * 12 11 10 33 33 H 1.08995 * 109.20399 * 291.07603 * 15 13 12 34 34 H 1.09011 * 109.20145 * 50.36271 * 15 13 12 35 35 H 1.09005 * 109.65884 * 325.78694 * 16 15 13 36 36 H 1.08997 * 109.83570 * 205.23907 * 16 15 13 37 37 H 1.08005 * 121.02616 * 359.59376 * 18 17 16 38 38 H 1.07999 * 120.46048 * 179.97438 * 19 18 17 39 39 H 1.07993 * 119.51647 * 180.10880 * 20 19 18 40 40 H 1.08994 * 109.64449 * 130.68928 * 23 22 21 41 41 H 1.09003 * 109.81014 * 10.16878 * 23 22 21 42 42 H 1.08999 * 109.17277 * 309.92937 * 24 13 12 43 43 H 1.08997 * 109.17074 * 69.19211 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0413 -4.0215 0.0014 13 6 7.5097 -4.0607 0.0020 14 1 7.8775 -3.1994 -0.5557 15 6 7.9574 -5.3197 -0.7136 16 6 9.4714 -5.3049 -0.9480 17 6 10.1522 -5.8443 0.2916 18 6 10.7580 -7.0906 0.2565 19 6 11.3781 -7.5452 1.4117 20 6 11.3667 -6.7460 2.5395 21 7 10.7760 -5.5669 2.5297 22 6 10.1757 -5.1066 1.4457 23 6 9.5086 -3.7464 1.4878 24 6 7.9931 -3.9479 1.4343 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.6803 -0.8889 27 1 3.8746 -0.6799 0.8911 28 1 3.6579 -3.1505 0.8908 29 1 3.6587 -3.1502 -0.8892 30 1 5.9150 -2.1226 -0.8890 31 1 5.9149 -2.1227 0.8910 32 1 5.6658 -4.5380 -0.7798 33 1 7.6966 -6.1880 -0.1086 34 1 7.4468 -5.3869 -1.6744 35 1 9.8037 -4.2835 -1.1334 36 1 9.7192 -5.9320 -1.8044 37 1 10.7474 -7.6896 -0.6421 38 1 11.8623 -8.5104 1.4296 39 1 11.8488 -7.0922 3.4417 40 1 9.8298 -3.1541 0.6311 41 1 9.7771 -3.2317 2.4104 42 1 7.5022 -3.1001 1.9121 43 1 7.7351 -4.8603 1.9720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421825603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -11.106676 kcal Electronic energy + Delta-G solvation = -20490.440196 eV Core-core repulsion = 17533.203468 eV Total energy + Delta-G solvation = -2957.236728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.63043 -39.09807 -36.61741 -35.06454 -34.50011 -33.39622 -31.65917 -31.06598 -28.33090 -26.02758 -25.48285 -23.97040 -23.34473 -22.06674 -21.56911 -21.03140 -18.89228 -17.77355 -17.53280 -16.76524 -16.43819 -16.02486 -15.78380 -15.62337 -15.44717 -15.16397 -14.73666 -14.28258 -14.06053 -13.88356 -13.73463 -13.64221 -13.36947 -13.01647 -12.80334 -12.68838 -12.64213 -12.43358 -11.93129 -11.76604 -11.74682 -11.49963 -11.46809 -11.31639 -11.17507 -10.75931 -10.61500 -10.34678 -9.69621 -9.31093 -8.29118 -6.33458 0.22463 0.38200 1.35883 1.38667 1.50884 2.36924 2.85743 3.06074 3.14482 3.37650 3.61099 3.81707 3.98496 4.03796 4.06862 4.19644 4.27267 4.33722 4.39819 4.44419 4.49705 4.54918 4.61139 4.69498 4.71778 4.80572 4.89701 4.90676 4.99676 5.04441 5.11812 5.16779 5.18129 5.26410 5.31364 5.36034 5.45279 5.53915 5.62536 5.67365 5.85618 6.15849 6.30550 6.55147 6.75062 7.09866 7.31143 8.87972 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.040654 B = 0.002857 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.580876 B = 9798.539314 C =10031.187929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.246 1.246 6 H -0.285 1.285 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.071 3.929 12 N -0.699 5.699 13 C 0.091 3.909 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.068 4.068 17 C -0.137 4.137 18 C -0.077 4.077 19 C -0.175 4.175 20 C 0.076 3.924 21 N -0.515 5.515 22 C 0.112 3.888 23 C -0.065 4.065 24 C -0.092 4.092 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.346 0.654 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.302 -14.028 -1.900 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.169 1.169 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.058 4.058 12 N -0.331 5.331 13 C -0.018 4.018 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.106 4.106 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.195 4.195 20 C -0.081 4.081 21 N -0.225 5.225 22 C -0.024 4.024 23 C -0.103 4.103 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 28.100 -13.479 -0.453 31.169 hybrid contribution -0.363 0.382 -1.225 1.333 sum 27.737 -13.097 -1.678 30.719 Atomic orbital electron populations 1.70083 1.08397 1.28187 1.52788 1.26095 0.95680 1.03765 0.94096 0.85589 0.79469 0.77869 0.79295 1.18920 1.16895 1.21038 1.21535 0.92356 0.93016 1.50295 0.95324 1.19488 0.93700 0.95122 0.96475 1.21269 0.94216 0.96806 1.00620 1.21928 0.94345 0.89278 1.00253 1.60475 1.08156 1.13694 1.50800 1.21134 0.86999 0.98121 0.95570 0.93475 1.21450 0.95651 0.97053 1.00630 1.20754 0.93191 1.02554 0.94142 1.20724 1.00056 0.96057 0.97061 1.21965 0.94139 0.94516 0.99644 1.22493 1.01086 1.02305 0.93594 1.23186 0.95807 0.89647 0.99490 1.67747 1.09589 1.15790 1.29350 1.21253 0.94811 0.97215 0.89108 1.20687 0.93921 0.91915 1.03807 1.21103 0.93543 1.01747 0.96674 0.92507 0.96154 0.96314 0.93659 0.93356 0.94678 0.91598 0.83528 0.92227 0.89889 0.89849 0.88313 0.82099 0.82012 0.81193 0.88757 0.90502 0.91908 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.61 5.41 30.60 0.17 -3.44 16 11 C 0.07 2.17 5.43 86.31 0.47 2.64 16 12 N -0.70 -18.18 6.27 -496.38 -3.11 -21.30 16 13 C 0.09 1.89 2.03 43.99 0.09 1.98 16 14 H 0.05 0.94 7.37 -2.39 -0.02 0.92 16 15 C -0.11 -1.77 4.95 30.20 0.15 -1.63 16 16 C -0.07 -0.88 5.47 30.13 0.16 -0.72 16 17 C -0.14 -2.30 4.98 -19.86 -0.10 -2.40 16 18 C -0.08 -1.02 9.81 22.49 0.22 -0.80 16 19 C -0.18 -2.28 10.12 22.39 0.23 -2.05 16 20 C 0.08 1.32 11.17 84.68 0.95 2.26 16 21 N -0.52 -11.97 10.30 -183.70 -1.89 -13.86 16 22 C 0.11 2.39 5.89 42.48 0.25 2.64 16 23 C -0.06 -1.30 5.57 30.11 0.17 -1.14 16 24 C -0.09 -2.10 5.14 30.12 0.15 -1.94 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 27 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.01 8.03 -2.39 -0.02 0.99 16 31 H 0.07 2.05 7.21 -2.39 -0.02 2.03 16 32 H 0.35 8.24 8.04 -89.69 -0.72 7.52 16 33 H 0.06 1.12 7.85 -2.39 -0.02 1.10 16 34 H 0.08 1.14 7.83 -2.38 -0.02 1.12 16 35 H 0.08 1.03 6.90 -2.38 -0.02 1.01 16 36 H 0.10 0.84 7.95 -2.39 -0.02 0.82 16 37 H 0.16 1.17 8.02 -2.91 -0.02 1.15 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.09 1.58 6.90 -2.39 -0.02 1.56 16 41 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 42 H 0.06 1.57 7.14 -2.39 -0.02 1.55 16 43 H 0.05 1.27 7.85 -2.39 -0.02 1.25 16 Total: -1.00 -71.68 336.59 1.12 -70.56 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.21 Total: 14.62 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.74 Total: -35.94 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -4.71 Total: -95.99 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -71.68 1.12 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421825603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.454 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds