Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00170 * 2 1 4 4 C 1.53003 * 109.47227 * 179.97438 * 3 2 1 5 5 N 1.46488 * 109.47108 * 63.65127 * 4 3 2 6 6 C 1.36940 * 120.00145 * 266.86085 * 5 4 3 7 7 H 1.07998 * 120.00012 * 143.29850 * 6 5 4 8 8 C 1.38808 * 119.99897 * 323.28953 * 6 5 4 9 9 N 1.31622 * 120.00218 * 160.08212 * 8 6 5 10 10 Si 1.86803 * 120.00002 * 340.08342 * 8 6 5 11 11 H 1.48501 * 109.46993 * 95.25529 * 10 8 6 12 12 H 1.48501 * 109.47022 * 215.25600 * 10 8 6 13 13 H 1.48497 * 109.47079 * 335.25378 * 10 8 6 14 14 C 1.46504 * 119.99908 * 86.86155 * 5 4 3 15 15 C 1.50697 * 109.47343 * 89.99974 * 14 5 4 16 16 C 1.37789 * 120.11277 * 259.98236 * 15 14 5 17 17 C 1.38781 * 120.67306 * 180.02562 * 16 15 14 18 18 C 1.36664 * 120.52558 * 359.97058 * 17 16 15 19 19 C 1.39590 * 119.76540 * 0.02562 * 18 17 16 20 20 C 1.46495 * 134.03790 * 180.35318 * 19 18 17 21 21 C 1.34234 * 106.99676 * 180.09185 * 20 19 18 22 22 N 1.36836 * 109.94084 * 359.59373 * 21 20 19 23 23 H 0.96999 * 125.06042 * 180.28316 * 22 21 20 24 24 C 1.37692 * 109.87442 * 0.26795 * 22 21 20 25 25 H 1.09007 * 109.47412 * 300.00451 * 1 2 3 26 26 H 1.09007 * 109.47000 * 60.00107 * 1 2 3 27 27 H 1.09002 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47478 * 59.99361 * 3 2 1 29 29 H 1.09003 * 109.47037 * 299.99886 * 3 2 1 30 30 H 1.09004 * 109.46442 * 303.65147 * 4 3 2 31 31 H 1.09002 * 109.46531 * 183.65309 * 4 3 2 32 32 H 0.96998 * 119.99852 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47164 * 329.99700 * 14 5 4 34 34 H 1.09001 * 109.47253 * 209.99496 * 14 5 4 35 35 H 1.08004 * 119.65939 * 0.02562 * 16 15 14 36 36 H 1.07992 * 119.73981 * 179.97438 * 17 16 15 37 37 H 1.08006 * 120.11996 * 180.02562 * 18 17 16 38 38 H 1.07994 * 126.50017 * 359.97438 * 20 19 18 39 39 H 1.08000 * 125.02858 * 179.85810 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9744 0.5348 -1.2367 6 6 4.1573 -0.8220 -1.2699 7 1 3.8978 -1.3803 -2.1572 8 6 4.6764 -1.4796 -0.1632 9 7 4.4971 -2.7761 -0.0240 10 14 5.6294 -0.5245 1.1288 11 1 4.7158 -0.1410 2.2349 12 1 6.7251 -1.3726 1.6632 13 1 6.2050 0.6992 0.5152 14 6 4.2176 1.3363 -2.4386 15 6 5.6563 1.7844 -2.4610 16 6 5.9892 3.0604 -2.0618 17 6 7.3102 3.4854 -2.0783 18 6 8.3050 2.6439 -2.4908 19 6 7.9904 1.3468 -2.8995 20 6 8.7804 0.2112 -3.3814 21 6 7.9199 -0.7894 -3.6268 22 7 6.6444 -0.3906 -3.3330 23 1 5.8525 -0.9431 -3.4260 24 6 6.6524 0.9115 -2.8855 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8523 0.5883 0.8564 31 1 3.9786 2.1784 0.0661 32 1 4.8602 -3.2356 0.7492 33 1 3.5652 2.2094 -2.4312 34 1 4.0105 0.7355 -3.3241 35 1 5.2141 3.7368 -1.7327 36 1 7.5542 4.4889 -1.7625 37 1 9.3309 2.9814 -2.5006 38 1 9.8516 0.1847 -3.5157 39 1 8.1943 -1.7662 -3.9970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453599019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = 43.678618 kcal Electronic energy + Delta-G solvation = -21804.983222 eV Core-core repulsion = 18714.289068 eV Total energy + Delta-G solvation = -3090.694154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58634 -37.50390 -36.53951 -35.37964 -32.14676 -31.30176 -29.37566 -28.48997 -28.24164 -25.79460 -25.62813 -22.99617 -21.86084 -21.13855 -20.59558 -19.47321 -17.18868 -16.72624 -16.01354 -15.58767 -15.46197 -14.85987 -14.67988 -14.19305 -14.12654 -13.70354 -13.43582 -13.14172 -12.78470 -12.60134 -12.27210 -11.99696 -11.92182 -11.58769 -11.31500 -11.11815 -10.93046 -10.78331 -10.57694 -10.38905 -10.27981 -9.78062 -9.49632 -9.01571 -8.92661 -8.49028 -7.57922 -7.07942 -6.85786 -5.95456 -3.36077 1.72590 2.28913 3.30011 3.35137 3.51997 3.61429 3.92007 4.46353 4.54841 4.58253 5.05387 5.26698 5.41344 5.45110 5.53183 5.66518 5.72123 5.74242 5.85276 5.90489 5.96457 5.97455 6.07641 6.11766 6.16342 6.20517 6.28423 6.39624 6.48599 6.59618 6.67362 6.71699 7.12872 7.18373 7.33058 7.39929 7.83069 7.91164 8.08045 8.24718 8.34996 8.93422 9.73342 10.10605 11.19479 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.007600 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.705160 B = 3683.168288 C = 4223.468581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.047 3.953 4 C 0.135 3.865 5 N -0.588 5.588 6 C -0.252 4.252 7 H 0.073 0.927 8 C 0.048 3.952 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.288 1.288 12 H -0.306 1.306 13 H -0.262 1.262 14 C 0.182 3.818 15 C -0.088 4.088 16 C -0.118 4.118 17 C -0.148 4.148 18 C -0.093 4.093 19 C -0.117 4.117 20 C -0.227 4.227 21 C 0.055 3.945 22 N -0.571 5.571 23 H 0.423 0.577 24 C 0.125 3.875 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 9.127 -4.850 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C -0.032 4.032 4 C 0.009 3.991 5 N -0.309 5.309 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.154 4.154 9 N -0.539 5.539 10 Si 0.704 3.296 11 H -0.217 1.217 12 H -0.234 1.234 13 H -0.187 1.187 14 C 0.056 3.944 15 C -0.093 4.093 16 C -0.139 4.139 17 C -0.168 4.168 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.253 4.253 21 C -0.074 4.074 22 N -0.172 5.172 23 H 0.262 0.738 24 C 0.016 3.984 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.154 0.846 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.938 8.656 -4.790 9.938 hybrid contribution 0.068 0.335 1.058 1.112 sum 1.007 8.991 -3.733 9.787 Atomic orbital electron populations 1.22647 0.83749 1.01857 0.98340 1.88282 1.16957 1.26638 1.94820 1.23237 0.97281 0.84997 0.97681 1.21281 0.90213 0.96578 0.91052 1.44084 1.75677 1.04206 1.06895 1.18490 1.36909 0.80066 1.02571 0.90927 1.25292 0.97341 0.94801 0.97924 1.69833 1.45681 1.08651 1.29696 0.87000 0.79917 0.80749 0.81970 1.21679 1.23398 1.18680 1.19926 0.88889 0.94496 0.91080 1.20031 0.97261 0.92305 0.99690 1.20555 0.95993 0.95034 1.02277 1.20440 0.93095 0.99264 1.03961 1.20028 0.98408 0.92211 1.00606 1.19201 0.92699 0.94790 1.05493 1.21487 0.98226 0.93189 1.12350 1.21749 0.83709 0.99323 1.02638 1.41979 1.08738 1.11287 1.55218 0.73763 1.17955 0.94542 0.85329 1.00578 0.95535 0.95201 0.90349 0.95265 0.94448 0.91981 0.92675 0.92917 0.93096 0.92740 0.86876 0.87188 0.87256 0.84599 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.63 10.27 -35.23 -0.36 -7.99 16 3 C 0.05 0.90 6.29 37.16 0.23 1.14 16 4 C 0.13 2.90 4.78 -4.05 -0.02 2.88 16 5 N -0.59 -13.35 2.05 -174.62 -0.36 -13.71 16 6 C -0.25 -6.63 8.91 -15.06 -0.13 -6.76 16 7 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 8 C 0.05 1.35 5.34 -17.43 -0.09 1.25 16 9 N -0.90 -27.07 13.97 55.49 0.78 -26.30 16 10 Si 0.87 23.05 24.83 -169.99 -4.22 18.83 16 11 H -0.29 -7.49 6.69 56.52 0.38 -7.12 16 12 H -0.31 -8.34 7.11 56.52 0.40 -7.94 16 13 H -0.26 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.18 3.52 5.82 -5.19 -0.03 3.49 16 15 C -0.09 -1.71 5.48 -104.47 -0.57 -2.28 16 16 C -0.12 -2.07 9.64 -39.54 -0.38 -2.45 16 17 C -0.15 -2.45 9.97 -39.95 -0.40 -2.85 16 18 C -0.09 -1.61 10.05 -39.65 -0.40 -2.01 16 19 C -0.12 -2.24 6.37 -105.13 -0.67 -2.91 16 20 C -0.23 -3.84 11.08 -37.67 -0.42 -4.25 16 21 C 0.05 0.90 11.81 -16.73 -0.20 0.70 16 22 N -0.57 -10.77 6.07 -10.65 -0.06 -10.84 16 23 H 0.42 8.00 8.21 -40.82 -0.34 7.67 16 24 C 0.13 2.51 6.98 -83.99 -0.59 1.93 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.52 3.11 -51.93 -0.16 1.36 16 31 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 35 H 0.11 1.71 8.03 -52.48 -0.42 1.29 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -32.41 324.29 -7.45 -39.85 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.55 Total: 5.75 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.55 Total: -10.49 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.35 Total: -50.84 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.36 Total: -7.99 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.22 Total: 18.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.41 -7.45 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.533 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds