Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00170 * 2 1 4 4 C 1.53003 * 109.47227 * 179.97438 * 3 2 1 5 5 N 1.46488 * 109.47108 * 63.65127 * 4 3 2 6 6 C 1.36940 * 120.00145 * 266.86085 * 5 4 3 7 7 H 1.07998 * 120.00012 * 143.29850 * 6 5 4 8 8 C 1.38808 * 119.99897 * 323.28953 * 6 5 4 9 9 N 1.31622 * 120.00218 * 160.08212 * 8 6 5 10 10 Si 1.86803 * 120.00002 * 340.08342 * 8 6 5 11 11 H 1.48501 * 109.46993 * 95.25529 * 10 8 6 12 12 H 1.48501 * 109.47022 * 215.25600 * 10 8 6 13 13 H 1.48497 * 109.47079 * 335.25378 * 10 8 6 14 14 C 1.46504 * 119.99908 * 86.86155 * 5 4 3 15 15 C 1.50697 * 109.47343 * 89.99974 * 14 5 4 16 16 C 1.37789 * 120.11277 * 259.98236 * 15 14 5 17 17 C 1.38781 * 120.67306 * 180.02562 * 16 15 14 18 18 C 1.36664 * 120.52558 * 359.97058 * 17 16 15 19 19 C 1.39590 * 119.76540 * 0.02562 * 18 17 16 20 20 C 1.46495 * 134.03790 * 180.35318 * 19 18 17 21 21 C 1.34234 * 106.99676 * 180.09185 * 20 19 18 22 22 N 1.36836 * 109.94084 * 359.59373 * 21 20 19 23 23 H 0.96999 * 125.06042 * 180.28316 * 22 21 20 24 24 C 1.37692 * 109.87442 * 0.26795 * 22 21 20 25 25 H 1.09007 * 109.47412 * 300.00451 * 1 2 3 26 26 H 1.09007 * 109.47000 * 60.00107 * 1 2 3 27 27 H 1.09002 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47478 * 59.99361 * 3 2 1 29 29 H 1.09003 * 109.47037 * 299.99886 * 3 2 1 30 30 H 1.09004 * 109.46442 * 303.65147 * 4 3 2 31 31 H 1.09002 * 109.46531 * 183.65309 * 4 3 2 32 32 H 0.96998 * 119.99852 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47164 * 329.99700 * 14 5 4 34 34 H 1.09001 * 109.47253 * 209.99496 * 14 5 4 35 35 H 1.08004 * 119.65939 * 0.02562 * 16 15 14 36 36 H 1.07992 * 119.73981 * 179.97438 * 17 16 15 37 37 H 1.08006 * 120.11996 * 180.02562 * 18 17 16 38 38 H 1.07994 * 126.50017 * 359.97438 * 20 19 18 39 39 H 1.08000 * 125.02858 * 179.85810 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9744 0.5348 -1.2367 6 6 4.1573 -0.8220 -1.2699 7 1 3.8978 -1.3803 -2.1572 8 6 4.6764 -1.4796 -0.1632 9 7 4.4971 -2.7761 -0.0240 10 14 5.6294 -0.5245 1.1288 11 1 4.7158 -0.1410 2.2349 12 1 6.7251 -1.3726 1.6632 13 1 6.2050 0.6992 0.5152 14 6 4.2176 1.3363 -2.4386 15 6 5.6563 1.7844 -2.4610 16 6 5.9892 3.0604 -2.0618 17 6 7.3102 3.4854 -2.0783 18 6 8.3050 2.6439 -2.4908 19 6 7.9904 1.3468 -2.8995 20 6 8.7804 0.2112 -3.3814 21 6 7.9199 -0.7894 -3.6268 22 7 6.6444 -0.3906 -3.3330 23 1 5.8525 -0.9431 -3.4260 24 6 6.6524 0.9115 -2.8855 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8523 0.5883 0.8564 31 1 3.9786 2.1784 0.0661 32 1 4.8602 -3.2356 0.7492 33 1 3.5652 2.2094 -2.4312 34 1 4.0105 0.7355 -3.3241 35 1 5.2141 3.7368 -1.7327 36 1 7.5542 4.4889 -1.7625 37 1 9.3309 2.9814 -2.5006 38 1 9.8516 0.1847 -3.5157 39 1 8.1943 -1.7662 -3.9970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453599019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = 23.204956 kcal Electronic energy + Delta-G solvation = -21805.871027 eV Core-core repulsion = 18714.289068 eV Total energy + Delta-G solvation = -3091.581959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93351 -39.06875 -37.93839 -36.98303 -33.96266 -32.96401 -30.80829 -30.02310 -29.58827 -27.35405 -27.12999 -24.70207 -23.34615 -22.48361 -22.13643 -20.90324 -18.79564 -18.44595 -17.65919 -17.13716 -16.86539 -16.42040 -16.06493 -15.75805 -15.68214 -15.15583 -15.02549 -14.65119 -14.49763 -14.09723 -13.90563 -13.53147 -13.31736 -13.03283 -13.00214 -12.56690 -12.44315 -12.28368 -12.25534 -11.96202 -11.84594 -11.66587 -11.37171 -10.64843 -10.40468 -10.30915 -8.94635 -8.75814 -8.40352 -8.11774 -5.45401 0.37912 0.93689 1.24323 1.37828 1.48237 1.97966 2.44676 2.57301 3.04092 3.13577 3.19041 3.61031 3.98811 4.13116 4.21295 4.30777 4.39070 4.43933 4.52009 4.55004 4.59417 4.61614 4.67013 4.70211 4.80683 4.87813 4.89334 4.97501 5.10043 5.11430 5.27645 5.33962 5.78259 5.83338 5.97510 6.04154 6.08321 6.19193 6.49783 6.57248 6.85307 7.02545 7.69768 8.10805 9.07678 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.007600 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.705160 B = 3683.168288 C = 4223.468581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.598 5.598 6 C -0.209 4.209 7 H 0.045 0.955 8 C -0.003 4.003 9 N -0.947 5.947 10 Si 0.926 3.074 11 H -0.286 1.286 12 H -0.326 1.326 13 H -0.263 1.263 14 C 0.187 3.813 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.151 4.151 18 C -0.098 4.098 19 C -0.145 4.145 20 C -0.233 4.233 21 C 0.047 3.953 22 N -0.585 5.585 23 H 0.417 0.583 24 C 0.094 3.906 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.163 0.837 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 12.027 -5.032 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.028 4.028 4 C 0.001 3.999 5 N -0.320 5.320 6 C -0.339 4.339 7 H 0.063 0.937 8 C -0.199 4.199 9 N -0.592 5.592 10 Si 0.759 3.241 11 H -0.214 1.214 12 H -0.256 1.256 13 H -0.188 1.188 14 C 0.062 3.938 15 C -0.119 4.119 16 C -0.137 4.137 17 C -0.170 4.170 18 C -0.117 4.117 19 C -0.149 4.149 20 C -0.258 4.258 21 C -0.081 4.081 22 N -0.185 5.185 23 H 0.255 0.745 24 C -0.015 4.015 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.180 0.820 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.108 11.627 -4.986 12.700 hybrid contribution -0.006 -0.436 0.979 1.071 sum 1.102 11.192 -4.008 11.939 Atomic orbital electron populations 1.22798 0.81228 1.02499 1.00253 1.88198 1.19940 1.28533 1.95264 1.23192 0.95233 0.84495 0.99907 1.21392 0.92412 0.97013 0.89074 1.44162 1.76284 1.03223 1.08310 1.18313 1.33169 0.81840 1.00571 0.93714 1.25673 0.99308 0.95107 0.99833 1.69940 1.48632 1.10057 1.30596 0.86143 0.78309 0.79091 0.80575 1.21421 1.25606 1.18786 1.19942 0.89934 0.94847 0.89102 1.20111 0.96710 0.93477 1.01572 1.20958 0.97378 0.94556 1.00787 1.20864 0.92481 1.00683 1.02983 1.20457 1.00108 0.91592 0.99574 1.19693 0.92777 0.96200 1.06275 1.21887 0.99524 0.92562 1.11849 1.22364 0.82836 1.00740 1.02143 1.42108 1.09317 1.11259 1.55863 0.74548 1.18385 0.95600 0.85901 1.01639 0.93259 0.93450 0.90530 0.92545 0.92434 0.95116 0.89983 0.93652 0.90121 0.93535 0.84257 0.83778 0.84719 0.81966 0.78973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.13 16 2 O -0.40 -17.00 10.27 -148.98 -1.53 -18.53 16 3 C 0.05 1.78 6.29 71.98 0.45 2.23 16 4 C 0.13 5.18 4.78 86.38 0.41 5.59 16 5 N -0.60 -26.57 2.05 -706.37 -1.45 -28.02 16 6 C -0.21 -11.16 8.91 84.03 0.75 -10.41 16 7 H 0.05 2.63 7.99 -2.91 -0.02 2.61 16 8 C 0.00 -0.19 5.34 84.86 0.45 0.27 16 9 N -0.95 -59.26 13.97 21.65 0.30 -58.96 16 10 Si 0.93 48.91 24.83 68.60 1.70 50.61 16 11 H -0.29 -14.70 6.69 99.48 0.67 -14.04 16 12 H -0.33 -18.01 7.11 99.48 0.71 -17.30 16 13 H -0.26 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.19 6.92 5.82 85.63 0.50 7.42 16 15 C -0.11 -4.24 5.48 -19.77 -0.11 -4.35 16 16 C -0.12 -3.71 9.64 22.29 0.21 -3.49 16 17 C -0.15 -4.44 9.97 22.03 0.22 -4.22 16 18 C -0.10 -3.12 10.05 22.23 0.22 -2.90 16 19 C -0.14 -5.31 6.37 -20.20 -0.13 -5.44 16 20 C -0.23 -7.55 11.08 23.51 0.26 -7.29 16 21 C 0.05 1.51 11.81 83.00 0.98 2.50 16 22 N -0.58 -22.24 6.07 -187.61 -1.14 -23.38 16 23 H 0.42 16.35 8.21 -92.71 -0.76 15.59 16 24 C 0.09 3.70 6.98 39.03 0.27 3.97 16 25 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.48 3.11 -2.39 -0.01 1.47 16 31 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 32 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.08 2.48 7.93 -2.39 -0.02 2.46 16 34 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 35 H 0.14 3.58 8.03 -2.91 -0.02 3.56 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -71.76 324.29 3.88 -67.87 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.25 Total: 24.40 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.75 Total: -14.00 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -2.28 Total: -110.36 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.53 Total: -18.53 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.70 Total: 50.61 kcal Total: -71.76 3.88 -67.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.076 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds