Wall clock time and date at job start Mon Mar 30 2020 01:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00082 * 2 1 4 4 C 1.50696 * 109.47426 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.03682 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.07441 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.15230 * 359.97438 * 6 5 4 8 8 C 1.38088 * 120.07187 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.04007 * 180.23138 * 4 3 2 10 10 N 1.39669 * 120.07092 * 359.97438 * 9 4 3 11 11 C 1.46502 * 119.99741 * 180.27188 * 10 9 4 12 12 C 1.53006 * 109.47309 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47124 * 55.00088 * 12 11 10 14 14 C 1.47206 * 109.46955 * 295.00524 * 12 11 10 15 15 N 6.57683 * 97.41497 * 340.21148 * 2 1 3 16 16 C 1.53001 * 109.47110 * 175.00485 * 12 11 10 17 17 C 1.50698 * 109.46606 * 185.00291 * 16 12 11 18 18 H 1.07998 * 120.00292 * 359.97438 * 17 16 12 19 19 C 1.37881 * 119.99768 * 179.97438 * 17 16 12 20 20 N 1.31515 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00217 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47294 * 59.99717 * 21 19 17 23 23 H 1.48504 * 109.47255 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47251 * 300.00075 * 21 19 17 25 25 H 1.09002 * 109.47179 * 60.00443 * 1 2 3 26 26 H 1.09005 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47144 * 299.99821 * 1 2 3 28 28 H 1.09003 * 109.46515 * 59.99933 * 3 2 1 29 29 H 1.09000 * 109.46961 * 300.00199 * 3 2 1 30 30 H 1.08007 * 119.96316 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92127 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.96413 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.03354 * 179.97438 * 8 7 6 34 34 H 0.96995 * 120.00716 * 0.28065 * 10 9 4 35 35 H 1.08997 * 109.47394 * 300.00185 * 11 10 9 36 36 H 1.09003 * 109.47099 * 60.00200 * 11 10 9 37 37 H 1.09007 * 109.46780 * 304.99655 * 16 12 11 38 38 H 1.08993 * 109.47391 * 65.00159 * 16 12 11 39 39 H 0.96995 * 120.00632 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1074 -0.0601 0.0016 6 6 5.4856 -0.1701 0.0017 7 6 6.2733 0.9667 0.0002 8 6 5.6851 2.2161 -0.0019 9 6 4.3005 2.3303 0.0056 10 7 3.7023 3.5923 0.0095 11 6 4.5350 4.7977 0.0087 12 6 3.6381 6.0373 0.0141 13 1 2.9506 5.9846 0.8583 14 6 2.8707 6.0931 -1.2408 15 7 2.2778 6.1367 -2.2080 16 6 4.5039 7.2926 0.1389 17 6 3.6165 8.5038 0.2679 18 1 2.5426 8.3897 0.2610 19 6 4.1758 9.7577 0.3946 20 7 5.4835 9.8966 0.4034 21 14 3.0760 11.2592 0.5537 22 1 2.2237 11.1228 1.7621 23 1 3.9163 12.4777 0.6749 24 1 2.2136 11.3710 -0.6502 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.4952 -0.9499 0.0024 31 1 5.9482 -1.1460 0.0021 32 1 7.3496 0.8773 -0.0002 33 1 6.3008 3.1034 -0.0026 34 1 2.7355 3.6709 0.0128 35 1 5.1672 4.8032 0.8966 36 1 5.1614 4.8059 -0.8833 37 1 5.1374 7.2106 1.0222 38 1 5.1287 7.3927 -0.7485 39 1 5.8770 10.7787 0.4922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521995057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:34 Heat of formation + Delta-G solvation = -6.424267 kcal Electronic energy + Delta-G solvation = -20041.632080 eV Core-core repulsion = 16948.765301 eV Total energy + Delta-G solvation = -3092.866778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77418 -37.80331 -37.16031 -35.12364 -33.69481 -32.18958 -31.54316 -29.12245 -27.42002 -26.40323 -25.56891 -23.83799 -22.06459 -21.24787 -21.09235 -17.65028 -16.94537 -16.73153 -16.50039 -16.04894 -15.75755 -15.24907 -14.67893 -14.46074 -14.18111 -13.87548 -13.69335 -13.33373 -13.03485 -12.84904 -12.65191 -12.39158 -12.16549 -11.90095 -11.75429 -11.46119 -11.17761 -11.06917 -10.93565 -10.76311 -10.65701 -10.43852 -10.06976 -9.88053 -9.72633 -9.37094 -8.64757 -8.53479 -7.29301 -6.17814 -4.22077 1.49418 1.73404 3.25385 3.30444 3.32525 3.39387 3.44913 3.52089 3.63054 3.95037 4.33803 4.60999 4.80876 5.07148 5.10643 5.11369 5.12223 5.20235 5.23026 5.29597 5.35459 5.43109 5.52246 5.55342 5.69549 5.85917 5.92933 6.13437 6.19156 6.29671 6.41004 6.50784 6.71572 6.94761 7.04888 7.30238 7.38919 7.39933 7.74997 7.75817 8.11667 8.25847 8.81588 9.43989 10.92903 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.003742 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.348582 B = 7480.422422 C = 8406.662324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.112 3.888 4 C -0.174 4.174 5 C -0.051 4.051 6 C -0.188 4.188 7 C -0.071 4.071 8 C -0.197 4.197 9 C 0.230 3.770 10 N -0.748 5.748 11 C 0.130 3.870 12 C -0.003 4.003 13 H 0.107 0.893 14 C 0.237 3.763 15 N -0.466 5.466 16 C 0.035 3.965 17 C -0.531 4.531 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.277 1.277 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.396 0.604 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -18.685 2.387 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.036 3.964 4 C -0.179 4.179 5 C -0.070 4.070 6 C -0.209 4.209 7 C -0.090 4.090 8 C -0.220 4.220 9 C 0.126 3.874 10 N -0.376 5.376 11 C 0.005 3.995 12 C -0.025 4.025 13 H 0.125 0.875 14 C -0.080 4.080 15 N -0.143 5.143 16 C -0.004 4.004 17 C -0.569 4.569 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.231 0.769 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.996 -18.461 0.938 18.726 hybrid contribution -0.914 1.326 0.426 1.666 sum -3.910 -17.135 1.364 17.629 Atomic orbital electron populations 1.22750 0.80938 1.02740 1.00166 1.87827 1.19598 1.27535 1.95462 1.21013 0.90656 0.84765 1.00015 1.19054 0.93199 0.92836 1.12814 1.20677 0.94317 0.96474 0.95486 1.20864 0.93660 0.98179 1.08151 1.20903 0.99381 0.92032 0.96678 1.20655 0.92357 0.98415 1.10527 1.17543 0.92061 0.84350 0.93466 1.44927 1.08433 1.02631 1.81645 1.21560 0.93398 0.81881 1.02626 1.19492 0.96545 0.98011 0.88468 0.87479 1.29092 0.92907 0.91459 0.94531 1.81017 1.10836 1.10286 1.12112 1.19150 0.94290 0.87909 0.99051 1.21056 0.92885 0.91362 1.51645 0.92560 1.24941 0.95004 0.99095 0.94776 1.69915 1.09621 1.23858 1.49364 0.86637 0.80503 0.82034 0.78814 1.20008 1.21091 1.20233 0.94005 0.89574 0.93952 0.92583 0.92722 0.85587 0.86733 0.86356 0.85576 0.76937 0.89991 0.91479 0.93940 0.95293 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.46 9.18 -35.23 -0.32 -4.78 16 3 C 0.11 1.31 5.07 36.00 0.18 1.49 16 4 C -0.17 -2.26 5.90 -104.42 -0.62 -2.88 16 5 C -0.05 -0.63 9.37 -39.61 -0.37 -1.00 16 6 C -0.19 -2.16 10.04 -39.55 -0.40 -2.56 16 7 C -0.07 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.20 -2.50 9.31 -39.38 -0.37 -2.87 16 9 C 0.23 3.07 6.63 -83.79 -0.56 2.51 16 10 N -0.75 -9.77 5.45 -58.63 -0.32 -10.09 16 11 C 0.13 1.81 4.28 -4.04 -0.02 1.79 16 12 C 0.00 -0.05 2.26 -93.40 -0.21 -0.26 16 13 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 14 C 0.24 4.57 13.45 -20.78 -0.28 4.29 16 15 N -0.47 -9.87 18.53 42.13 0.78 -9.09 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -13.61 8.60 -34.44 -0.30 -13.91 16 18 H 0.06 1.43 7.59 -52.49 -0.40 1.03 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 21 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 29 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.13 1.47 7.00 -52.48 -0.37 1.11 16 31 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.50 6.74 -52.49 -0.35 1.15 16 34 H 0.40 4.93 6.91 -40.82 -0.28 4.65 16 35 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 36 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -29.71 336.68 -7.09 -36.79 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.58 Total: 1.38 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.43 Total: -10.99 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 1.20 Total: -43.24 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.32 Total: -4.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.71 -7.09 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521995057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.370 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds