Wall clock time and date at job start Mon Mar 30 2020 01:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00082 * 2 1 4 4 C 1.50696 * 109.47426 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.03682 * 359.97438 * 4 3 2 6 6 C 1.38265 * 120.07441 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.15230 * 359.97438 * 6 5 4 8 8 C 1.38088 * 120.07187 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.04007 * 180.23138 * 4 3 2 10 10 N 1.39669 * 120.07092 * 359.97438 * 9 4 3 11 11 C 1.46502 * 119.99741 * 180.27188 * 10 9 4 12 12 C 1.53006 * 109.47309 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47124 * 55.00088 * 12 11 10 14 14 C 1.47206 * 109.46955 * 295.00524 * 12 11 10 15 15 N 6.57683 * 97.41497 * 340.21148 * 2 1 3 16 16 C 1.53001 * 109.47110 * 175.00485 * 12 11 10 17 17 C 1.50698 * 109.46606 * 185.00291 * 16 12 11 18 18 H 1.07998 * 120.00292 * 359.97438 * 17 16 12 19 19 C 1.37881 * 119.99768 * 179.97438 * 17 16 12 20 20 N 1.31515 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00217 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47294 * 59.99717 * 21 19 17 23 23 H 1.48504 * 109.47255 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47251 * 300.00075 * 21 19 17 25 25 H 1.09002 * 109.47179 * 60.00443 * 1 2 3 26 26 H 1.09005 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47144 * 299.99821 * 1 2 3 28 28 H 1.09003 * 109.46515 * 59.99933 * 3 2 1 29 29 H 1.09000 * 109.46961 * 300.00199 * 3 2 1 30 30 H 1.08007 * 119.96316 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.92127 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.96413 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.03354 * 179.97438 * 8 7 6 34 34 H 0.96995 * 120.00716 * 0.28065 * 10 9 4 35 35 H 1.08997 * 109.47394 * 300.00185 * 11 10 9 36 36 H 1.09003 * 109.47099 * 60.00200 * 11 10 9 37 37 H 1.09007 * 109.46780 * 304.99655 * 16 12 11 38 38 H 1.08993 * 109.47391 * 65.00159 * 16 12 11 39 39 H 0.96995 * 120.00632 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1074 -0.0601 0.0016 6 6 5.4856 -0.1701 0.0017 7 6 6.2733 0.9667 0.0002 8 6 5.6851 2.2161 -0.0019 9 6 4.3005 2.3303 0.0056 10 7 3.7023 3.5923 0.0095 11 6 4.5350 4.7977 0.0087 12 6 3.6381 6.0373 0.0141 13 1 2.9506 5.9846 0.8583 14 6 2.8707 6.0931 -1.2408 15 7 2.2778 6.1367 -2.2080 16 6 4.5039 7.2926 0.1389 17 6 3.6165 8.5038 0.2679 18 1 2.5426 8.3897 0.2610 19 6 4.1758 9.7577 0.3946 20 7 5.4835 9.8966 0.4034 21 14 3.0760 11.2592 0.5537 22 1 2.2237 11.1228 1.7621 23 1 3.9163 12.4777 0.6749 24 1 2.2136 11.3710 -0.6502 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.4952 -0.9499 0.0024 31 1 5.9482 -1.1460 0.0021 32 1 7.3496 0.8773 -0.0002 33 1 6.3008 3.1034 -0.0026 34 1 2.7355 3.6709 0.0128 35 1 5.1672 4.8032 0.8966 36 1 5.1614 4.8059 -0.8833 37 1 5.1374 7.2106 1.0222 38 1 5.1287 7.3927 -0.7485 39 1 5.8770 10.7787 0.4922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521995057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:34 Heat of formation + Delta-G solvation = -22.956426 kcal Electronic energy + Delta-G solvation = -20042.348968 eV Core-core repulsion = 16948.765301 eV Total energy + Delta-G solvation = -3093.583666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71978 -38.84803 -38.35279 -36.42368 -35.40663 -33.62516 -32.64762 -30.29599 -28.44509 -27.70952 -26.40228 -25.19803 -23.74474 -22.25485 -22.05894 -18.81877 -18.48683 -18.11882 -17.59187 -16.86432 -16.72664 -16.53101 -16.28080 -15.38500 -15.28738 -15.03281 -14.81254 -14.57363 -14.34629 -14.21477 -13.94318 -13.69636 -13.47437 -13.22401 -13.02767 -12.81769 -12.58324 -12.47852 -12.44163 -12.07955 -11.92939 -11.72279 -11.48538 -11.24300 -10.97788 -10.76429 -10.55695 -9.57166 -8.27063 -8.20600 -6.28913 0.56795 0.79226 1.41027 1.42750 1.49308 1.88057 1.90843 2.38033 2.48777 2.78768 3.02130 3.12267 3.17823 3.89178 3.98778 4.17731 4.24397 4.28823 4.36216 4.39196 4.55289 4.57257 4.59171 4.68574 4.77518 4.83062 4.85880 4.86720 5.00854 5.24704 5.44849 5.47206 5.58534 5.62708 5.77010 5.81133 6.02348 6.16565 6.22781 6.41891 6.67668 6.77132 6.85725 7.39883 8.90022 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.003742 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.348582 B = 7480.422422 C = 8406.662324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.114 3.886 4 C -0.187 4.187 5 C -0.062 4.062 6 C -0.189 4.189 7 C -0.075 4.075 8 C -0.209 4.209 9 C 0.216 3.784 10 N -0.747 5.747 11 C 0.143 3.857 12 C 0.011 3.989 13 H 0.129 0.871 14 C 0.249 3.751 15 N -0.500 5.500 16 C 0.040 3.960 17 C -0.542 4.542 18 H 0.056 0.944 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.947 3.053 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.005 0.995 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -19.687 3.114 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.038 3.962 4 C -0.191 4.191 5 C -0.081 4.081 6 C -0.208 4.208 7 C -0.093 4.093 8 C -0.232 4.232 9 C 0.112 3.888 10 N -0.377 5.377 11 C 0.018 3.982 12 C -0.011 4.011 13 H 0.147 0.853 14 C -0.067 4.067 15 N -0.177 5.177 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.074 0.926 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.772 3.228 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.062 0.938 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.233 0.767 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.347 -19.483 1.671 19.839 hybrid contribution -0.807 1.557 0.187 1.764 sum -4.154 -17.926 1.858 18.494 Atomic orbital electron populations 1.22946 0.79433 1.04083 1.00708 1.87797 1.21283 1.27447 1.95561 1.20972 0.90141 0.85000 1.00116 1.19277 0.93982 0.93022 1.12848 1.20850 0.94984 0.96456 0.95760 1.21173 0.93397 0.99298 1.06977 1.21209 1.00699 0.91553 0.95873 1.20878 0.92321 0.99275 1.10723 1.17668 0.92485 0.84306 0.94349 1.44763 1.08401 1.02299 1.82222 1.21360 0.92697 0.80925 1.03241 1.19397 0.96338 0.97271 0.88118 0.85304 1.29508 0.92235 0.90443 0.94529 1.81021 1.12132 1.11352 1.13213 1.18963 0.94132 0.89033 0.97791 1.21505 0.93382 0.92721 1.50373 0.92622 1.25677 0.96089 1.01825 0.94973 1.70010 1.10951 1.24337 1.50818 0.85779 0.78979 0.79188 0.78809 1.18753 1.20853 1.20753 0.93759 0.87911 0.93095 0.91838 0.93171 0.85240 0.84570 0.84064 0.85101 0.76657 0.88402 0.91953 0.93981 0.97662 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.87 9.18 -148.98 -1.37 -10.24 16 3 C 0.11 2.56 5.07 71.23 0.36 2.93 16 4 C -0.19 -4.66 5.90 -19.74 -0.12 -4.78 16 5 C -0.06 -1.46 9.37 22.25 0.21 -1.25 16 6 C -0.19 -3.95 10.04 22.29 0.22 -3.73 16 7 C -0.07 -1.57 10.04 22.25 0.22 -1.35 16 8 C -0.21 -5.02 9.31 22.40 0.21 -4.81 16 9 C 0.22 5.49 6.63 38.21 0.25 5.75 16 10 N -0.75 -18.58 5.45 -339.41 -1.85 -20.43 16 11 C 0.14 3.78 4.28 86.38 0.37 4.15 16 12 C 0.01 0.34 2.26 -12.60 -0.03 0.32 16 13 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 14 C 0.25 9.43 13.45 89.45 1.20 10.64 16 15 N -0.50 -21.00 18.53 20.00 0.37 -20.63 16 16 C 0.04 1.72 4.42 29.85 0.13 1.85 16 17 C -0.54 -27.48 8.60 25.60 0.22 -27.26 16 18 H 0.06 2.77 7.59 -2.91 -0.02 2.75 16 19 C 0.01 0.73 5.46 84.66 0.46 1.19 16 20 N -0.92 -51.53 13.29 21.45 0.28 -51.25 16 21 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 29 H 0.05 1.15 8.07 -2.39 -0.02 1.13 16 30 H 0.13 2.89 7.00 -2.91 -0.02 2.87 16 31 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.13 2.92 6.74 -2.91 -0.02 2.90 16 34 H 0.40 9.44 6.91 -92.71 -0.64 8.80 16 35 H 0.10 2.32 7.95 -2.39 -0.02 2.30 16 36 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -62.32 336.68 4.84 -57.48 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.41 Total: 15.51 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.97 Total: -14.73 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -1.20 Total: -92.31 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.37 Total: -10.24 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -62.32 4.84 -57.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521995057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.520 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds