Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38596 * 120.80265 * 2 1 4 4 N 1.32332 * 119.10564 * 179.97438 * 3 2 1 5 5 C 1.31799 * 120.81744 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.12060 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46912 * 89.99903 * 6 5 4 8 8 N 1.46901 * 109.46769 * 179.97438 * 7 6 5 9 9 C 1.46906 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47607 * 54.99702 * 10 9 8 12 12 C 1.47206 * 109.47245 * 294.99931 * 10 9 8 13 13 N 9.48283 * 162.75337 * 142.42394 * 2 1 3 14 14 C 1.53001 * 109.46969 * 175.00329 * 10 9 8 15 15 C 1.50703 * 109.47012 * 185.00016 * 14 10 9 16 16 H 1.07998 * 119.99974 * 359.97438 * 15 14 10 17 17 C 1.37877 * 120.00187 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00527 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99757 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47609 * 90.00195 * 19 17 15 21 21 H 1.48504 * 109.47343 * 209.99929 * 19 17 15 22 22 H 1.48496 * 109.47151 * 329.99863 * 19 17 15 23 23 N 1.31788 * 121.75488 * 0.27985 * 5 4 3 24 24 C 1.32339 * 120.81896 * 359.44296 * 23 5 4 25 25 H 1.09001 * 109.47379 * 90.00538 * 1 2 3 26 26 H 1.09008 * 109.46938 * 210.00135 * 1 2 3 27 27 H 1.09002 * 109.47169 * 329.99963 * 1 2 3 28 28 H 1.07998 * 120.44625 * 359.95352 * 3 2 1 29 29 H 1.09001 * 109.46980 * 330.00031 * 6 5 4 30 30 H 1.08992 * 109.47158 * 210.00136 * 6 5 4 31 31 H 1.09002 * 109.47398 * 300.00078 * 7 6 5 32 32 H 1.09001 * 109.47194 * 60.00258 * 7 6 5 33 33 H 1.00898 * 110.99877 * 56.04956 * 8 7 6 34 34 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 35 35 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 36 36 H 1.09004 * 109.46816 * 304.99383 * 14 10 9 37 37 H 1.08993 * 109.47518 * 65.00018 * 14 10 9 38 38 H 0.96996 * 120.00551 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.44550 * 180.29664 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1809 -0.0001 0.0015 6 6 5.6879 -0.0001 0.0027 7 6 6.1967 0.0005 1.4456 8 7 7.6657 -0.0001 1.4467 9 6 8.1911 -0.0001 2.8186 10 6 9.7206 -0.0001 2.7789 11 1 10.0686 0.8416 2.1802 12 6 10.1959 -1.2579 2.1799 13 7 10.5634 -2.2283 1.7145 14 6 10.2676 0.1256 4.2022 15 6 11.7688 0.2491 4.1543 16 1 12.2814 0.2386 3.2038 17 6 12.4879 0.3756 5.3239 18 7 13.7979 0.4828 5.2822 19 14 11.6012 0.3945 6.9679 20 1 11.4828 -0.9934 7.4826 21 1 12.3703 1.2173 7.9358 22 1 10.2456 0.9747 6.7925 23 7 3.5394 -1.1514 -0.0034 24 6 2.2166 -1.1906 0.0014 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6972 2.1373 -0.0008 29 1 6.0516 0.8896 -0.5113 30 1 6.0516 -0.8903 -0.5104 31 1 5.8330 0.8908 1.9588 32 1 5.8330 -0.8892 1.9596 33 1 8.0280 0.7808 0.9204 34 1 7.8416 0.8901 3.3414 35 1 7.8408 -0.8898 3.3418 36 1 9.8452 1.0113 4.6769 37 1 9.9941 -0.7597 4.7761 38 1 14.3038 0.5714 6.1050 39 1 1.6972 -2.1374 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556035016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = 33.115902 kcal Electronic energy + Delta-G solvation = -19328.180685 eV Core-core repulsion = 16269.321249 eV Total energy + Delta-G solvation = -3058.859437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.06654 -38.90134 -37.06058 -35.64424 -35.00260 -34.69526 -33.68747 -31.56436 -28.88069 -27.17323 -25.61839 -24.52466 -23.50759 -23.21917 -22.38317 -18.91846 -18.78005 -18.53041 -17.72108 -16.54897 -16.44120 -16.08222 -15.58142 -15.44174 -15.29802 -14.93407 -14.70691 -14.44572 -14.25769 -13.93517 -13.82895 -13.65489 -13.40190 -13.19137 -13.15458 -13.01717 -12.66425 -12.47886 -12.09379 -11.89213 -11.84121 -11.82570 -11.70656 -11.50172 -11.27962 -10.73046 -10.18151 -10.08166 -9.35844 -8.23746 -6.29205 -0.11945 0.14091 1.43869 1.44708 1.55769 2.06733 2.13661 2.41609 2.66020 2.85296 3.12450 3.24909 3.29724 3.44357 3.70283 3.94683 3.95806 4.05144 4.19055 4.25818 4.34710 4.39236 4.65039 4.68935 4.73147 4.77555 4.84062 4.92000 4.99095 5.03329 5.12639 5.20250 5.26207 5.45729 5.51892 5.64155 5.99080 6.03389 6.27356 6.51396 6.78472 6.92616 7.12666 7.35032 8.93124 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.002735 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.463730 B =10237.056401 C =10665.746427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.189 4.189 3 C 0.134 3.866 4 N -0.532 5.532 5 C 0.298 3.702 6 C -0.045 4.045 7 C 0.083 3.917 8 N -0.701 5.701 9 C 0.077 3.923 10 C 0.026 3.974 11 H 0.120 0.880 12 C 0.262 3.738 13 N -0.516 5.516 14 C -0.004 4.004 15 C -0.530 4.530 16 H 0.030 0.970 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.223 1.223 23 N -0.538 5.538 24 C 0.132 3.868 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.195 0.805 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.354 0.646 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.557 4.079 -8.548 33.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.193 4.193 3 C -0.031 4.031 4 N -0.246 5.246 5 C 0.031 3.969 6 C -0.085 4.085 7 C -0.047 4.047 8 N -0.334 5.334 9 C -0.054 4.054 10 C 0.004 3.996 11 H 0.138 0.862 12 C -0.054 4.054 13 N -0.194 5.194 14 C -0.043 4.043 15 C -0.568 4.568 16 H 0.048 0.952 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.145 1.145 23 N -0.252 5.252 24 C -0.033 4.033 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.212 0.788 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -30.813 1.959 -9.245 32.230 hybrid contribution -0.455 0.958 1.027 1.476 sum -31.268 2.917 -8.218 32.461 Atomic orbital electron populations 1.20737 0.86419 1.04798 1.03916 1.22082 1.00930 0.94727 1.01535 1.23771 0.88987 1.00012 0.90359 1.68275 1.11416 1.30439 1.14440 1.23156 0.98059 0.83754 0.91972 1.20270 0.85138 1.04751 0.98314 1.21626 0.87277 1.00701 0.95063 1.60348 1.07192 1.51396 1.14452 1.21933 0.90441 1.03010 0.89970 1.19068 0.95261 0.87881 0.97389 0.86222 1.29503 0.90550 0.94409 0.90987 1.81045 1.11773 1.14047 1.12531 1.19600 0.94007 0.98898 0.91782 1.21409 0.92321 1.49765 0.93298 0.95175 1.26049 0.95390 0.94166 1.03920 1.70085 1.08024 1.52121 1.29258 0.85696 0.80673 0.78465 0.78054 1.20357 1.21538 1.14547 1.68278 1.11523 1.30923 1.14471 1.23741 0.88969 1.00075 0.90563 0.89468 0.89793 0.89562 0.78781 0.88383 0.89394 0.94092 0.91940 0.82679 0.90493 0.90685 0.91653 0.95731 0.92680 0.79197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.06 71.24 0.72 0.38 16 2 C -0.19 -2.12 5.91 -19.69 -0.12 -2.23 16 3 C 0.13 1.86 11.01 84.70 0.93 2.79 16 4 N -0.53 -10.83 10.33 -187.85 -1.94 -12.77 16 5 C 0.30 6.59 6.90 138.75 0.96 7.55 16 6 C -0.05 -0.94 5.91 29.85 0.18 -0.77 16 7 C 0.08 1.78 5.67 86.30 0.49 2.27 16 8 N -0.70 -16.45 6.20 -513.88 -3.19 -19.64 16 9 C 0.08 1.93 5.05 86.30 0.44 2.37 16 10 C 0.03 0.87 2.35 -12.60 -0.03 0.84 16 11 H 0.12 3.72 8.14 -2.39 -0.02 3.71 16 12 C 0.26 10.92 13.67 89.43 1.22 12.14 16 13 N -0.52 -24.24 18.55 20.02 0.37 -23.87 16 14 C 0.00 -0.16 3.49 29.85 0.10 -0.05 16 15 C -0.53 -28.82 9.15 25.60 0.23 -28.59 16 16 H 0.03 1.85 7.84 -2.91 -0.02 1.83 16 17 C 0.00 0.07 5.47 84.66 0.46 0.54 16 18 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 19 Si 0.95 41.87 27.47 68.60 1.88 43.76 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.22 -8.36 6.54 99.48 0.65 -7.71 16 23 N -0.54 -11.84 10.33 -187.84 -1.94 -13.78 16 24 C 0.13 1.97 11.01 84.70 0.93 2.91 16 25 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.08 0.14 8.10 -2.38 -0.02 0.12 16 27 H 0.09 0.10 8.10 -2.39 -0.02 0.08 16 28 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.35 7.16 8.73 -89.70 -0.78 6.37 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.35 7.20 -2.39 -0.02 2.33 16 37 H 0.02 0.99 7.57 -2.39 -0.02 0.98 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.27 340.36 2.22 -74.05 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.21 Total: 11.37 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.52 Total: 0.14 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -6.40 Total: -129.31 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.76 kcal Total: -76.27 2.22 -74.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556035016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.167 kcal (2) G-P(sol) polarization free energy of solvation -76.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds