Wall clock time and date at job start Mon Mar 30 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48498 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47384 * 300.00195 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00555 * 3 2 1 7 7 C 1.37874 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99903 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99774 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46669 * 180.02562 * 11 10 9 13 13 C 1.38262 * 119.99658 * 90.00485 * 12 11 10 14 14 C 1.38208 * 119.99554 * 180.02562 * 13 12 11 15 15 C 1.38255 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.38220 * 119.99681 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99654 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.46877 * 90.00316 * 17 16 15 19 19 C 1.48538 * 111.00166 * 52.60356 * 18 17 16 20 20 C 1.54933 * 103.23069 * 159.71948 * 19 18 17 21 21 C 1.54596 * 102.91920 * 322.58709 * 20 19 18 22 22 C 1.47905 * 111.00115 * 169.99761 * 18 17 16 23 23 C 1.38205 * 119.99867 * 270.02162 * 12 11 10 24 24 H 0.97003 * 119.99757 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46564 * 60.00536 * 9 7 2 26 26 H 1.08991 * 109.47458 * 300.00594 * 9 7 2 27 27 H 1.00896 * 111.00192 * 303.96196 * 10 9 7 28 28 H 1.08990 * 109.47083 * 60.00577 * 11 10 9 29 29 H 1.08997 * 109.47102 * 300.00100 * 11 10 9 30 30 H 1.07992 * 119.99989 * 359.97438 * 13 12 11 31 31 H 1.08000 * 120.00313 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.00604 * 179.70652 * 15 14 13 33 33 H 1.08997 * 109.47118 * 210.00049 * 17 16 15 34 34 H 1.08996 * 109.47165 * 330.00477 * 17 16 15 35 35 H 1.09004 * 110.66284 * 278.15399 * 19 18 17 36 36 H 1.09005 * 110.66673 * 41.28092 * 19 18 17 37 37 H 1.08994 * 110.72953 * 204.22743 * 20 19 18 38 38 H 1.08998 * 110.72295 * 80.94284 * 20 19 18 39 39 H 1.08998 * 110.30581 * 263.03783 * 21 20 19 40 40 H 1.09004 * 110.31200 * 140.87505 * 21 20 19 41 41 H 1.08999 * 109.91135 * 333.50696 * 22 18 17 42 42 H 1.08996 * 109.91870 * 94.60450 * 22 18 17 43 43 H 1.08005 * 120.00151 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5148 -6.0260 -0.0005 13 6 2.9769 -6.5394 1.1972 14 6 3.9032 -7.5651 1.1978 15 6 4.3673 -8.0783 0.0008 16 6 3.9044 -7.5657 -1.1965 17 6 4.4099 -8.1254 -2.5013 18 7 3.5461 -9.2354 -2.9252 19 6 2.1193 -8.8229 -2.9427 20 6 1.4591 -9.8689 -3.8757 21 6 2.5377 -10.0944 -4.9600 22 6 3.8616 -9.6543 -4.3082 23 6 2.9789 -6.5386 -1.1971 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8895 27 1 2.8405 -3.5487 -0.7818 28 1 0.8808 -4.9812 -0.8913 29 1 0.8801 -4.9817 0.8886 30 1 2.6148 -6.1383 2.1322 31 1 4.2645 -7.9660 2.1333 32 1 5.0946 -8.8766 0.0012 33 1 4.3967 -7.3441 -3.2612 34 1 5.4294 -8.4880 -2.3705 35 1 1.6912 -8.8759 -1.9416 36 1 2.0140 -7.8192 -3.3546 37 1 0.5458 -9.4702 -4.3172 38 1 1.2559 -10.7937 -3.3357 39 1 2.3261 -9.4828 -5.8370 40 1 2.5834 -11.1482 -5.2349 41 1 4.2877 -8.8173 -4.8615 42 1 4.5659 -10.4860 -4.2927 43 1 2.6178 -6.1377 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562985745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:38 Heat of formation + Delta-G solvation = 20.698054 kcal Electronic energy + Delta-G solvation = -20447.485490 eV Core-core repulsion = 17491.627919 eV Total energy + Delta-G solvation = -2955.857572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.84497 -38.43774 -35.41127 -33.39433 -32.54165 -30.78879 -30.23856 -28.93642 -27.00927 -25.57347 -24.29632 -21.88222 -21.64636 -21.29841 -21.02369 -19.89462 -16.69844 -16.28616 -16.15736 -15.99525 -15.40473 -14.93560 -14.59323 -14.30226 -14.06706 -13.55137 -13.39498 -13.24603 -12.98146 -12.71194 -12.22396 -12.16321 -12.05367 -11.70390 -11.53892 -11.44577 -11.31057 -11.26645 -10.89282 -10.79023 -10.74809 -10.63735 -10.50275 -9.94645 -9.20081 -8.77396 -8.57705 -8.48763 -8.37682 -7.31226 -6.04497 -4.06427 1.51303 1.58838 3.30403 3.37589 3.43133 3.72769 4.11503 4.41665 4.43671 4.48012 4.71988 4.84987 4.91505 5.07361 5.11604 5.26479 5.29315 5.31500 5.33000 5.46107 5.49421 5.54134 5.56885 5.63604 5.66247 5.77913 5.79873 5.90022 5.92656 5.95946 6.10749 6.25837 6.32516 6.60167 6.69120 6.73546 6.84284 6.92352 7.19023 7.22962 7.39276 7.77237 8.10473 8.36775 8.58325 9.03104 9.58598 11.06636 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003325 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.867585 B = 8419.750421 C = 8966.926481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.094 3.906 12 C -0.066 4.066 13 C -0.097 4.097 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.088 4.088 17 C 0.088 3.912 18 N -0.512 5.512 19 C 0.036 3.964 20 C -0.126 4.126 21 C -0.131 4.131 22 C 0.033 3.967 23 C -0.108 4.108 24 H 0.261 0.739 25 H -0.014 1.014 26 H 0.029 0.971 27 H 0.329 0.671 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -21.191 -6.588 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.313 5.313 11 C -0.036 4.036 12 C -0.066 4.066 13 C -0.116 4.116 14 C -0.141 4.141 15 C -0.126 4.126 16 C -0.089 4.089 17 C -0.039 4.039 18 N -0.236 5.236 19 C -0.092 4.092 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.095 4.095 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.004 0.996 26 H 0.047 0.953 27 H 0.145 0.855 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.201 -21.463 -5.543 23.018 hybrid contribution -0.050 1.673 -1.445 2.212 sum 6.151 -19.789 -6.988 21.870 Atomic orbital electron populations 1.69979 1.06080 1.26696 1.51015 1.24997 0.94893 0.99400 0.95338 0.86420 0.80087 0.83277 0.77514 1.19627 1.21090 1.20954 1.21219 0.93579 0.90171 1.50199 0.91891 1.19594 0.90605 0.87329 0.95838 1.60740 1.21000 1.00549 1.49045 1.20886 0.93382 0.88774 1.00513 1.19987 0.97651 0.96202 0.92786 1.21074 0.96785 0.95794 0.97955 1.21098 0.97967 0.97333 0.97746 1.20880 1.00267 0.99638 0.91832 1.19561 0.98131 0.96798 0.94373 1.21204 0.97163 0.91832 0.93740 1.64907 1.03038 1.33666 1.22020 1.23266 0.88481 0.96942 1.00490 1.22497 0.97718 0.99666 0.96483 1.22395 0.94553 1.01749 0.98218 1.22892 0.97736 1.00217 0.88614 1.20926 0.97456 0.96731 0.97651 0.92955 0.99574 0.95316 0.85459 0.95578 0.90892 0.85971 0.86357 0.86494 0.93829 0.89941 0.89769 0.93510 0.91056 0.90816 0.91563 0.91098 0.93766 0.90395 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.11 5.44 -4.97 -0.03 5.09 16 10 N -0.68 -14.99 6.48 -116.34 -0.75 -15.75 16 11 C 0.09 1.71 5.81 -4.97 -0.03 1.68 16 12 C -0.07 -1.03 5.39 -104.62 -0.56 -1.60 16 13 C -0.10 -1.42 9.70 -39.58 -0.38 -1.81 16 14 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 15 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 16 C -0.09 -1.12 4.59 -104.62 -0.48 -1.60 16 17 C 0.09 0.96 5.19 -4.97 -0.03 0.94 16 18 N -0.51 -5.46 5.39 -231.89 -1.25 -6.71 16 19 C 0.04 0.38 4.97 -1.90 -0.01 0.37 16 20 C -0.13 -1.09 7.06 -24.87 -0.18 -1.27 16 21 C -0.13 -1.02 6.93 -25.38 -0.18 -1.20 16 22 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 23 C -0.11 -1.54 8.00 -39.59 -0.32 -1.86 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.33 7.01 8.71 -39.29 -0.34 6.67 16 28 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.04 0.48 7.75 -51.93 -0.40 0.07 16 34 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.08 1.00 7.74 -51.93 -0.40 0.59 16 36 H 0.05 0.52 7.09 -51.93 -0.37 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.38 7.57 -51.93 -0.39 -0.01 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.56 7.39 -52.48 -0.39 1.18 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -30.37 348.12 -11.78 -42.15 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.33 Total: 2.70 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.41 Total: -18.22 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -1.27 Total: -48.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.37 -11.78 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562985745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.850 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds