Wall clock time and date at job start Mon Mar 30 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48498 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47384 * 300.00195 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00555 * 3 2 1 7 7 C 1.37874 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99903 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99774 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46669 * 180.02562 * 11 10 9 13 13 C 1.38262 * 119.99658 * 90.00485 * 12 11 10 14 14 C 1.38208 * 119.99554 * 180.02562 * 13 12 11 15 15 C 1.38255 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.38220 * 119.99681 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99654 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.46877 * 90.00316 * 17 16 15 19 19 C 1.48538 * 111.00166 * 52.60356 * 18 17 16 20 20 C 1.54933 * 103.23069 * 159.71948 * 19 18 17 21 21 C 1.54596 * 102.91920 * 322.58709 * 20 19 18 22 22 C 1.47905 * 111.00115 * 169.99761 * 18 17 16 23 23 C 1.38205 * 119.99867 * 270.02162 * 12 11 10 24 24 H 0.97003 * 119.99757 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46564 * 60.00536 * 9 7 2 26 26 H 1.08991 * 109.47458 * 300.00594 * 9 7 2 27 27 H 1.00896 * 111.00192 * 303.96196 * 10 9 7 28 28 H 1.08990 * 109.47083 * 60.00577 * 11 10 9 29 29 H 1.08997 * 109.47102 * 300.00100 * 11 10 9 30 30 H 1.07992 * 119.99989 * 359.97438 * 13 12 11 31 31 H 1.08000 * 120.00313 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.00604 * 179.70652 * 15 14 13 33 33 H 1.08997 * 109.47118 * 210.00049 * 17 16 15 34 34 H 1.08996 * 109.47165 * 330.00477 * 17 16 15 35 35 H 1.09004 * 110.66284 * 278.15399 * 19 18 17 36 36 H 1.09005 * 110.66673 * 41.28092 * 19 18 17 37 37 H 1.08994 * 110.72953 * 204.22743 * 20 19 18 38 38 H 1.08998 * 110.72295 * 80.94284 * 20 19 18 39 39 H 1.08998 * 110.30581 * 263.03783 * 21 20 19 40 40 H 1.09004 * 110.31200 * 140.87505 * 21 20 19 41 41 H 1.08999 * 109.91135 * 333.50696 * 22 18 17 42 42 H 1.08996 * 109.91870 * 94.60450 * 22 18 17 43 43 H 1.08005 * 120.00151 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5148 -6.0260 -0.0005 13 6 2.9769 -6.5394 1.1972 14 6 3.9032 -7.5651 1.1978 15 6 4.3673 -8.0783 0.0008 16 6 3.9044 -7.5657 -1.1965 17 6 4.4099 -8.1254 -2.5013 18 7 3.5461 -9.2354 -2.9252 19 6 2.1193 -8.8229 -2.9427 20 6 1.4591 -9.8689 -3.8757 21 6 2.5377 -10.0944 -4.9600 22 6 3.8616 -9.6543 -4.3082 23 6 2.9789 -6.5386 -1.1971 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8895 27 1 2.8405 -3.5487 -0.7818 28 1 0.8808 -4.9812 -0.8913 29 1 0.8801 -4.9817 0.8886 30 1 2.6148 -6.1383 2.1322 31 1 4.2645 -7.9660 2.1333 32 1 5.0946 -8.8766 0.0012 33 1 4.3967 -7.3441 -3.2612 34 1 5.4294 -8.4880 -2.3705 35 1 1.6912 -8.8759 -1.9416 36 1 2.0140 -7.8192 -3.3546 37 1 0.5458 -9.4702 -4.3172 38 1 1.2559 -10.7937 -3.3357 39 1 2.3261 -9.4828 -5.8370 40 1 2.5834 -11.1482 -5.2349 41 1 4.2877 -8.8173 -4.8615 42 1 4.5659 -10.4860 -4.2927 43 1 2.6178 -6.1377 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562985745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:35 Heat of formation + Delta-G solvation = 1.630114 kcal Electronic energy + Delta-G solvation = -20448.312338 eV Core-core repulsion = 17491.627919 eV Total energy + Delta-G solvation = -2956.684419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82236 -39.35175 -37.11396 -34.85667 -34.05335 -32.20861 -31.16308 -29.67988 -28.88467 -26.48817 -25.95700 -23.56233 -22.80776 -22.48102 -21.70056 -20.97569 -18.63661 -17.44361 -17.07022 -16.88688 -16.74613 -16.53207 -16.02646 -15.59682 -15.23980 -15.04474 -14.57542 -14.27071 -14.16158 -13.92614 -13.65972 -13.35647 -13.13299 -13.03468 -12.94092 -12.72877 -12.63487 -12.42543 -12.23540 -12.11696 -12.01748 -11.78053 -11.66244 -11.43771 -11.29694 -10.69778 -9.76015 -9.66456 -9.32774 -9.16292 -8.25264 -6.36890 0.43998 0.49008 1.39819 1.40652 1.54850 2.38286 2.74229 3.07894 3.21070 3.60312 3.71353 3.76289 3.91239 3.93203 4.02712 4.10177 4.22800 4.33047 4.37014 4.42481 4.60125 4.62222 4.67630 4.69271 4.75321 4.77533 4.91205 4.96177 5.02884 5.06770 5.11688 5.16252 5.20496 5.21786 5.29874 5.56984 5.57864 5.67265 5.76668 5.91646 5.97474 6.01954 6.13935 6.38337 6.64431 6.83677 7.34114 8.86538 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003325 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.867585 B = 8419.750421 C = 8966.926481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.681 5.681 11 C 0.099 3.901 12 C -0.084 4.084 13 C -0.112 4.112 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.087 4.087 17 C 0.090 3.910 18 N -0.519 5.519 19 C 0.035 3.965 20 C -0.124 4.124 21 C -0.128 4.128 22 C 0.031 3.969 23 C -0.113 4.113 24 H 0.266 0.734 25 H -0.038 1.038 26 H 0.002 0.998 27 H 0.333 0.667 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 -22.227 -7.084 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.311 5.311 11 C -0.030 4.030 12 C -0.085 4.085 13 C -0.130 4.130 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.087 4.087 17 C -0.037 4.037 18 N -0.243 5.243 19 C -0.093 4.093 20 C -0.162 4.162 21 C -0.166 4.166 22 C -0.097 4.097 23 C -0.132 4.132 24 H 0.075 0.925 25 H -0.020 1.020 26 H 0.020 0.980 27 H 0.150 0.850 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.131 -22.526 -6.044 24.699 hybrid contribution -0.654 1.887 -1.292 2.378 sum 7.476 -20.639 -7.336 23.145 Atomic orbital electron populations 1.70100 1.07800 1.28036 1.51440 1.25974 0.95831 1.03442 0.94474 0.85250 0.78866 0.78111 0.77860 1.18719 1.20147 1.20237 1.21545 0.93762 0.91366 1.50750 0.91869 1.19246 0.90616 0.88796 0.93347 1.60617 1.20300 1.00968 1.49232 1.20838 0.94068 0.88018 1.00081 1.19761 0.98331 0.96289 0.94096 1.21176 0.97687 0.96796 0.97384 1.21381 0.96844 0.96266 0.99229 1.21230 1.00035 0.99657 0.91318 1.19778 0.97240 0.95987 0.95700 1.21217 0.97857 0.91980 0.92659 1.64919 1.02740 1.33242 1.23396 1.23212 0.89040 0.97107 0.99968 1.22498 0.98198 0.99056 0.96445 1.22404 0.93528 1.02746 0.97895 1.22980 0.98484 1.00621 0.87592 1.20928 0.98007 0.97402 0.96907 0.92523 1.02032 0.97984 0.85014 0.95780 0.91466 0.86181 0.83668 0.83945 0.94102 0.88397 0.91432 0.94560 0.90483 0.90649 0.91021 0.89715 0.93592 0.89311 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.33 9.32 25.60 0.24 -31.09 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.48 5.44 85.56 0.47 11.94 16 10 N -0.68 -30.91 6.48 -521.97 -3.38 -34.29 16 11 C 0.10 3.76 5.81 85.56 0.50 4.25 16 12 C -0.08 -2.69 5.39 -19.86 -0.11 -2.80 16 13 C -0.11 -3.23 9.70 22.27 0.22 -3.01 16 14 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 15 C -0.10 -2.31 9.70 22.27 0.22 -2.09 16 16 C -0.09 -2.09 4.59 -19.86 -0.09 -2.18 16 17 C 0.09 1.81 5.19 85.56 0.44 2.26 16 18 N -0.52 -10.19 5.39 -887.56 -4.78 -14.97 16 19 C 0.03 0.72 4.97 86.65 0.43 1.15 16 20 C -0.12 -2.01 7.06 31.80 0.22 -1.78 16 21 C -0.13 -1.73 6.93 31.47 0.22 -1.52 16 22 C 0.03 0.47 6.70 86.44 0.58 1.05 16 23 C -0.11 -3.22 8.00 22.27 0.18 -3.04 16 24 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.04 -2.24 8.14 -2.38 -0.02 -2.26 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.33 14.58 8.71 -89.70 -0.78 13.80 16 28 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 29 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 30 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.04 0.84 7.75 -2.39 -0.02 0.83 16 34 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.07 1.61 7.74 -2.38 -0.02 1.59 16 36 H 0.04 0.82 7.09 -2.38 -0.02 0.80 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.70 7.57 -2.39 -0.02 0.68 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 3.12 7.39 -2.91 -0.02 3.10 16 Total: -1.00 -65.36 348.12 -1.47 -66.83 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.19 Total: 21.27 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.19 Total: -28.91 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -7.88 Total: -106.03 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.36 -1.47 -66.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562985745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.464 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds