Wall clock time and date at job start Mon Mar 30 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47163 * 239.99871 * 3 2 1 5 5 H 1.48500 * 109.47495 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47403 * 119.99716 * 3 2 1 7 7 C 1.37872 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00130 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99990 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.53116 * 109.52131 * 174.99470 * 12 11 10 14 14 C 1.53035 * 109.27620 * 177.56035 * 13 12 11 15 15 N 1.46855 * 109.52301 * 300.82119 * 14 13 12 16 16 C 1.39676 * 110.99902 * 185.83835 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46849 * 111.19593 * 61.74571 * 15 14 13 23 23 C 1.53041 * 109.52056 * 298.25550 * 22 15 14 24 24 H 0.96997 * 119.99902 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46996 * 59.99682 * 9 7 2 26 26 H 1.08997 * 109.47239 * 299.99841 * 9 7 2 27 27 H 1.00900 * 110.99834 * 303.95363 * 10 9 7 28 28 H 1.09000 * 109.47423 * 60.00025 * 11 10 9 29 29 H 1.09006 * 109.46708 * 299.99672 * 11 10 9 30 30 H 1.09001 * 109.51759 * 54.86903 * 12 11 10 31 31 H 1.09005 * 109.50279 * 57.62090 * 13 12 11 32 32 H 1.09001 * 109.54124 * 297.51985 * 13 12 11 33 33 H 1.09008 * 109.46354 * 180.80902 * 14 13 12 34 34 H 1.08993 * 109.45683 * 60.83204 * 14 13 12 35 35 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 36 36 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 38 38 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 39 39 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 40 40 H 1.08995 * 109.46185 * 58.27117 * 22 15 14 41 41 H 1.08997 * 109.45953 * 178.24444 * 22 15 14 42 42 H 1.09000 * 109.50381 * 299.23776 * 23 22 15 43 43 H 1.09001 * 109.50327 * 179.12024 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 6 1.8055 -7.3860 0.1259 14 6 2.8304 -8.5209 0.0647 15 7 3.5602 -8.4550 -1.2079 16 6 4.4115 -9.5527 -1.3541 17 6 5.1940 -9.6796 -2.4948 18 6 6.0342 -10.7665 -2.6364 19 6 6.0927 -11.7308 -1.6470 20 6 5.3192 -11.6046 -0.5076 21 6 4.4768 -10.5202 -0.3595 22 6 4.3024 -7.1937 -1.3296 23 6 3.3214 -6.0192 -1.3101 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8405 -3.5487 -0.7808 28 1 0.8807 -4.9813 -0.8903 29 1 0.8801 -4.9817 0.8898 30 1 3.2125 -5.9175 0.8413 31 1 1.0942 -7.4935 -0.6931 32 1 1.2743 -7.4263 1.0768 33 1 2.3161 -9.4791 0.1392 34 1 3.5329 -8.4205 0.8919 35 1 5.1457 -8.9290 -3.2698 36 1 6.6426 -10.8659 -3.5232 37 1 6.7470 -12.5823 -1.7625 38 1 5.3703 -12.3575 0.2651 39 1 3.8694 -10.4247 0.5283 40 1 4.9980 -7.0997 -0.4959 41 1 4.8571 -7.1879 -2.2678 42 1 2.6340 -6.1051 -2.1517 43 1 3.8737 -5.0824 -1.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564864600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:29 Heat of formation + Delta-G solvation = 20.943305 kcal Electronic energy + Delta-G solvation = -20505.759256 eV Core-core repulsion = 17549.912319 eV Total energy + Delta-G solvation = -2955.846937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.50143 -38.23032 -35.80872 -33.58480 -32.04360 -31.71951 -30.48798 -29.42079 -27.14549 -25.12857 -23.99330 -22.54840 -21.86953 -21.33586 -20.74624 -19.56733 -17.85159 -16.42196 -15.99012 -15.59757 -15.08463 -14.96941 -14.60403 -14.51078 -14.02947 -13.73389 -13.68332 -13.58666 -13.25140 -12.67714 -12.61860 -12.26063 -12.04010 -11.66965 -11.43871 -11.33993 -11.23976 -11.14315 -10.88769 -10.75058 -10.44051 -10.32631 -10.11545 -9.85983 -9.74339 -9.15762 -9.12101 -8.47255 -7.95664 -7.27667 -6.02626 -4.04785 1.20983 1.22596 3.33650 3.37445 3.40538 3.45513 3.75803 4.42840 4.59612 4.72634 4.78324 4.83662 4.88370 4.96318 5.10592 5.20762 5.24862 5.33038 5.36215 5.38622 5.43756 5.54024 5.62117 5.69771 5.76360 5.78698 5.87171 5.99499 6.11616 6.15198 6.22258 6.22974 6.29063 6.37304 6.48447 6.59316 6.66492 6.91097 7.18097 7.27367 7.43496 7.78830 8.14071 8.40831 8.62919 9.04343 9.60089 11.08497 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.041758 B = 0.002809 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.363786 B = 9963.827063 C =10381.311663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.065 3.935 12 C -0.087 4.087 13 C -0.113 4.113 14 C 0.054 3.946 15 N -0.489 5.489 16 C 0.119 3.881 17 C -0.144 4.144 18 C -0.096 4.096 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.175 4.175 22 C 0.062 3.938 23 C -0.115 4.115 24 H 0.262 0.738 25 H -0.015 1.015 26 H 0.027 0.973 27 H 0.327 0.673 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 -22.925 -2.783 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.106 4.106 13 C -0.151 4.151 14 C -0.073 4.073 15 N -0.204 5.204 16 C 0.021 3.979 17 C -0.164 4.164 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.113 4.113 21 C -0.196 4.196 22 C -0.063 4.063 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.045 0.955 27 H 0.144 0.856 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.107 -22.690 -2.456 24.572 hybrid contribution 0.446 0.863 -0.362 1.037 sum 9.552 -21.827 -2.818 23.992 Atomic orbital electron populations 1.69956 1.06087 1.26890 1.50844 1.24996 0.94887 0.99375 0.95356 0.86539 0.79417 0.82658 0.78643 1.20267 1.21338 1.20152 1.21156 0.93451 0.90311 1.50430 0.92061 1.19539 0.90625 0.87420 0.95707 1.60714 1.21262 1.01382 1.48834 1.21884 0.94860 0.90013 0.99722 1.21249 0.97616 0.93894 0.97822 1.21655 0.97533 0.93414 1.02512 1.22279 0.96366 0.99964 0.88694 1.59011 1.25631 1.01728 1.34029 1.19061 0.91897 0.92939 0.94044 1.20829 0.98548 0.99784 0.97272 1.21011 0.97925 0.93777 0.98721 1.21039 1.01417 0.99853 0.95028 1.20998 0.95619 0.97197 0.97491 1.21348 1.02340 0.97066 0.98861 1.22248 0.95134 0.87326 1.01584 1.21708 0.98177 0.96972 0.98455 0.92858 0.99680 0.95505 0.85607 0.96351 0.91858 0.90625 0.91066 0.90974 0.90276 0.93633 0.85783 0.86072 0.86423 0.86263 0.85587 0.93773 0.90279 0.91223 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.15 5.44 -4.97 -0.03 5.13 16 10 N -0.69 -14.83 6.49 -115.05 -0.75 -15.57 16 11 C 0.07 1.15 5.15 -3.82 -0.02 1.13 16 12 C -0.09 -1.20 2.46 -90.50 -0.22 -1.42 16 13 C -0.11 -1.32 5.38 -26.65 -0.14 -1.46 16 14 C 0.05 0.57 4.15 -3.83 -0.02 0.56 16 15 N -0.49 -5.65 4.70 -171.15 -0.80 -6.46 16 16 C 0.12 1.33 5.64 -83.79 -0.47 0.86 16 17 C -0.14 -1.49 9.16 -39.38 -0.36 -1.85 16 18 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 19 C -0.15 -1.34 10.04 -39.55 -0.40 -1.74 16 20 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 21 C -0.18 -1.78 8.82 -39.38 -0.35 -2.13 16 22 C 0.06 0.71 5.26 -3.83 -0.02 0.69 16 23 C -0.12 -1.48 5.09 -26.65 -0.14 -1.62 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.33 6.65 7.05 -39.29 -0.28 6.37 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.77 6.98 -51.92 -0.36 0.40 16 34 H 0.05 0.48 7.74 -51.93 -0.40 0.08 16 35 H 0.12 1.19 7.15 -52.49 -0.38 0.81 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.14 5.81 -52.49 -0.30 0.83 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.83 6.70 -51.93 -0.35 0.48 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.05 6.81 -51.93 -0.35 0.70 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -30.67 338.59 -11.15 -41.82 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.04 Total: 2.62 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.38 Total: -17.94 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.81 Total: -48.40 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.67 -11.15 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564864600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.764 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds