Wall clock time and date at job start Mon Mar 30 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47163 * 239.99871 * 3 2 1 5 5 H 1.48500 * 109.47495 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47403 * 119.99716 * 3 2 1 7 7 C 1.37872 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00130 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99990 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.53116 * 109.52131 * 174.99470 * 12 11 10 14 14 C 1.53035 * 109.27620 * 177.56035 * 13 12 11 15 15 N 1.46855 * 109.52301 * 300.82119 * 14 13 12 16 16 C 1.39676 * 110.99902 * 185.83835 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46849 * 111.19593 * 61.74571 * 15 14 13 23 23 C 1.53041 * 109.52056 * 298.25550 * 22 15 14 24 24 H 0.96997 * 119.99902 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46996 * 59.99682 * 9 7 2 26 26 H 1.08997 * 109.47239 * 299.99841 * 9 7 2 27 27 H 1.00900 * 110.99834 * 303.95363 * 10 9 7 28 28 H 1.09000 * 109.47423 * 60.00025 * 11 10 9 29 29 H 1.09006 * 109.46708 * 299.99672 * 11 10 9 30 30 H 1.09001 * 109.51759 * 54.86903 * 12 11 10 31 31 H 1.09005 * 109.50279 * 57.62090 * 13 12 11 32 32 H 1.09001 * 109.54124 * 297.51985 * 13 12 11 33 33 H 1.09008 * 109.46354 * 180.80902 * 14 13 12 34 34 H 1.08993 * 109.45683 * 60.83204 * 14 13 12 35 35 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 36 36 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 38 38 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 39 39 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 40 40 H 1.08995 * 109.46185 * 58.27117 * 22 15 14 41 41 H 1.08997 * 109.45953 * 178.24444 * 22 15 14 42 42 H 1.09000 * 109.50381 * 299.23776 * 23 22 15 43 43 H 1.09001 * 109.50327 * 179.12024 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 6 1.8055 -7.3860 0.1259 14 6 2.8304 -8.5209 0.0647 15 7 3.5602 -8.4550 -1.2079 16 6 4.4115 -9.5527 -1.3541 17 6 5.1940 -9.6796 -2.4948 18 6 6.0342 -10.7665 -2.6364 19 6 6.0927 -11.7308 -1.6470 20 6 5.3192 -11.6046 -0.5076 21 6 4.4768 -10.5202 -0.3595 22 6 4.3024 -7.1937 -1.3296 23 6 3.3214 -6.0192 -1.3101 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8405 -3.5487 -0.7808 28 1 0.8807 -4.9813 -0.8903 29 1 0.8801 -4.9817 0.8898 30 1 3.2125 -5.9175 0.8413 31 1 1.0942 -7.4935 -0.6931 32 1 1.2743 -7.4263 1.0768 33 1 2.3161 -9.4791 0.1392 34 1 3.5329 -8.4205 0.8919 35 1 5.1457 -8.9290 -3.2698 36 1 6.6426 -10.8659 -3.5232 37 1 6.7470 -12.5823 -1.7625 38 1 5.3703 -12.3575 0.2651 39 1 3.8694 -10.4247 0.5283 40 1 4.9980 -7.0997 -0.4959 41 1 4.8571 -7.1879 -2.2678 42 1 2.6340 -6.1051 -2.1517 43 1 3.8737 -5.0824 -1.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564864600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:29 Heat of formation + Delta-G solvation = 2.442172 kcal Electronic energy + Delta-G solvation = -20506.561525 eV Core-core repulsion = 17549.912319 eV Total energy + Delta-G solvation = -2956.649206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33360 -39.17099 -37.22491 -35.23070 -33.79786 -32.55360 -31.30434 -30.50287 -28.77089 -26.58977 -24.94522 -23.86807 -23.24603 -22.41554 -21.83161 -20.61170 -18.71433 -18.47380 -16.84072 -16.77713 -16.44419 -16.34438 -15.84604 -15.45429 -15.20675 -14.87364 -14.83386 -14.67110 -14.34905 -14.03712 -13.91393 -13.53347 -13.21112 -13.10017 -12.82797 -12.70398 -12.59737 -12.33151 -12.17194 -12.08154 -11.92450 -11.71772 -11.48640 -11.18060 -11.10031 -10.66584 -10.59257 -9.82264 -9.13250 -8.74357 -8.23450 -6.35260 0.49437 0.52113 1.40757 1.44594 1.52650 2.39504 2.67596 3.00301 3.09617 3.50069 3.73960 3.79898 3.92836 4.10013 4.12256 4.20656 4.29028 4.34742 4.39745 4.53311 4.56097 4.61076 4.63648 4.69196 4.78245 4.83669 4.90434 4.92814 5.00716 5.08513 5.13832 5.16786 5.24959 5.26663 5.41602 5.47192 5.55516 5.61036 5.69131 5.91198 6.01102 6.08669 6.40497 6.43722 6.71850 6.88313 7.35905 8.88114 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.041758 B = 0.002809 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.363786 B = 9963.827063 C =10381.311663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.067 3.933 12 C -0.076 4.076 13 C -0.107 4.107 14 C 0.058 3.942 15 N -0.498 5.498 16 C 0.098 3.902 17 C -0.158 4.158 18 C -0.101 4.101 19 C -0.157 4.157 20 C -0.100 4.100 21 C -0.186 4.186 22 C 0.069 3.931 23 C -0.111 4.111 24 H 0.266 0.734 25 H -0.041 1.041 26 H -0.002 1.002 27 H 0.335 0.665 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.353 -23.983 -2.844 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.319 5.319 11 C -0.063 4.063 12 C -0.095 4.095 13 C -0.145 4.145 14 C -0.069 4.069 15 N -0.213 5.213 16 C 0.000 4.000 17 C -0.178 4.178 18 C -0.119 4.119 19 C -0.175 4.175 20 C -0.119 4.119 21 C -0.207 4.207 22 C -0.056 4.056 23 C -0.149 4.149 24 H 0.074 0.926 25 H -0.024 1.024 26 H 0.016 0.984 27 H 0.153 0.847 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.882 -23.783 -2.521 26.275 hybrid contribution -0.105 1.092 -0.351 1.152 sum 10.777 -22.691 -2.872 25.284 Atomic orbital electron populations 1.70091 1.07871 1.28123 1.51407 1.25992 0.95820 1.03515 0.94511 0.85356 0.78088 0.77450 0.79225 1.18987 1.20766 1.19252 1.21527 0.93835 0.91422 1.50802 0.91657 1.19196 0.90693 0.89101 0.93027 1.60597 1.20470 1.01623 1.49254 1.21960 0.95748 0.89460 0.99123 1.21129 0.96634 0.93472 0.98251 1.21601 0.97621 0.92427 1.02879 1.22253 0.96076 0.99873 0.88655 1.59028 1.26051 1.01783 1.34455 1.19213 0.92714 0.93172 0.94897 1.20997 0.99048 1.00535 0.97265 1.21310 0.97673 0.93327 0.99626 1.21393 1.01260 1.00296 0.94593 1.21320 0.95073 0.97261 0.98221 1.21536 1.02847 0.97292 0.98984 1.22143 0.94563 0.86912 1.01991 1.21636 0.98200 0.97529 0.97526 0.92574 1.02384 0.98372 0.84737 0.96838 0.92510 0.91026 0.91580 0.89974 0.89001 0.93288 0.85688 0.84084 0.84150 0.84162 0.84852 0.93997 0.89407 0.91861 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.54 -31.20 9.32 25.60 0.24 -30.96 16 8 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.44 5.44 85.56 0.47 11.90 16 10 N -0.69 -30.15 6.49 -517.90 -3.36 -33.51 16 11 C 0.07 2.39 5.15 86.31 0.44 2.83 16 12 C -0.08 -2.08 2.46 -10.71 -0.03 -2.11 16 13 C -0.11 -2.41 5.38 30.64 0.16 -2.25 16 14 C 0.06 1.16 4.15 86.32 0.36 1.52 16 15 N -0.50 -11.00 4.70 -695.38 -3.27 -14.27 16 16 C 0.10 2.07 5.64 38.21 0.22 2.28 16 17 C -0.16 -3.08 9.16 22.40 0.21 -2.88 16 18 C -0.10 -1.62 10.04 22.25 0.22 -1.40 16 19 C -0.16 -2.32 10.04 22.29 0.22 -2.10 16 20 C -0.10 -1.57 10.04 22.25 0.22 -1.35 16 21 C -0.19 -3.46 8.82 22.40 0.20 -3.26 16 22 C 0.07 1.53 5.26 86.33 0.45 1.99 16 23 C -0.11 -2.83 5.09 30.65 0.16 -2.67 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.33 13.79 7.05 -89.69 -0.63 13.16 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.62 6.98 -2.38 -0.02 1.60 16 34 H 0.05 0.95 7.74 -2.39 -0.02 0.94 16 35 H 0.13 2.30 7.15 -2.91 -0.02 2.28 16 36 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.13 2.17 5.81 -2.91 -0.02 2.15 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.78 6.70 -2.39 -0.02 1.76 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.91 6.81 -2.39 -0.02 1.89 16 Total: -1.00 -65.93 338.59 0.03 -65.90 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.34 Total: 20.30 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.01 Total: -28.00 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -6.34 Total: -104.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.93 0.03 -65.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564864600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.339 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds