Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46757 * 2 1 4 4 C 1.52999 * 109.47108 * 240.00192 * 2 1 3 5 5 C 1.50697 * 109.47584 * 60.00034 * 4 2 1 6 6 H 1.08009 * 119.99663 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00199 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00018 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47440 * 59.99989 * 9 7 5 11 11 H 1.48500 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46996 * 299.99766 * 9 7 5 13 13 C 1.52996 * 109.47250 * 119.99498 * 2 1 3 14 14 N 1.46502 * 109.47527 * 300.00490 * 13 2 1 15 15 C 1.31516 * 120.00088 * 114.38562 * 14 13 2 16 16 C 1.41345 * 119.88891 * 353.39909 * 15 14 13 17 17 C 1.35682 * 119.84218 * 179.97438 * 16 15 14 18 18 C 1.41453 * 119.62454 * 359.97438 * 17 16 15 19 19 C 1.43198 * 120.11016 * 179.97438 * 18 17 16 20 20 N 8.37656 * 59.57833 * 114.98166 * 2 1 3 21 21 C 1.39493 * 119.77872 * 0.02562 * 18 17 16 22 22 N 1.36847 * 119.92711 * 179.97438 * 21 18 17 23 23 N 1.36202 * 120.14892 * 0.24803 * 21 18 17 24 24 H 0.96998 * 119.80376 * 179.74523 * 23 21 18 25 25 H 1.09004 * 109.47251 * 300.00108 * 1 2 3 26 26 H 1.09010 * 109.47276 * 59.99949 * 1 2 3 27 27 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47245 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47422 * 299.99740 * 3 2 1 30 30 H 1.09004 * 109.47329 * 59.99939 * 3 2 1 31 31 H 1.08999 * 109.46833 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.46888 * 299.99715 * 4 2 1 33 33 H 0.97003 * 120.00258 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47253 * 179.97438 * 13 2 1 35 35 H 1.09008 * 109.46653 * 60.00529 * 13 2 1 36 36 H 1.07996 * 120.08014 * 359.96651 * 16 15 14 37 37 H 1.08001 * 120.18335 * 179.97438 * 17 16 15 38 38 H 0.97003 * 119.99676 * 359.97438 * 22 21 18 39 39 H 0.96993 * 120.00430 * 179.71836 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6264 -1.5514 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7981 -5.2577 11 1 1.7423 -0.3020 -6.4696 12 1 -0.2379 0.3979 -5.2566 13 6 2.0400 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 0.7072 -0.6330 3.2539 16 6 0.1642 -1.8883 2.8971 17 6 -0.7065 -2.5093 3.7321 18 6 -1.0629 -1.8934 4.9546 19 6 -1.9813 -2.5392 5.8434 20 7 -2.7116 -3.0506 6.5475 21 6 -0.5176 -0.6543 5.2910 22 7 -0.8607 -0.0555 6.4727 23 7 0.3513 -0.0365 4.4434 24 1 0.7246 0.8267 4.6806 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 -0.7208 -1.2494 32 1 1.6766 -1.7489 -1.2492 33 1 2.8602 -1.8833 -4.7336 34 1 3.1300 -0.7215 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.4417 -2.3520 1.9621 37 1 -1.1250 -3.4683 3.4648 38 1 -1.4828 -0.4925 7.0751 39 1 -0.4791 0.8041 6.7096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565226815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = 74.344758 kcal Electronic energy + Delta-G solvation = -20462.550572 eV Core-core repulsion = 17405.478952 eV Total energy + Delta-G solvation = -3057.071619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.83016 -37.67406 -36.56137 -35.65772 -33.64909 -32.99215 -31.88157 -28.63924 -26.94506 -26.25962 -26.03737 -23.76991 -23.28211 -21.69590 -20.01425 -18.56039 -17.92217 -17.03914 -16.36047 -16.13236 -15.62661 -15.31171 -15.20529 -14.51339 -13.80953 -13.60718 -13.35425 -13.24342 -13.07556 -12.72321 -12.33144 -12.07220 -11.94250 -11.87864 -11.62345 -10.96349 -10.83374 -10.76563 -10.49735 -10.42674 -10.33191 -10.12447 -9.65964 -9.29402 -9.12372 -8.74013 -8.65504 -8.27829 -7.02544 -5.92541 -3.92525 1.00017 1.49813 2.05971 2.63571 3.07684 3.26097 3.37229 3.41758 3.44142 3.78880 4.07596 4.51499 4.59818 5.01135 5.17126 5.30891 5.43175 5.69260 5.74564 5.93596 6.03162 6.08939 6.20283 6.29473 6.46307 6.50917 6.58739 6.65321 6.72754 6.84847 6.89082 6.93032 7.10660 7.27256 7.30969 7.38462 7.57246 7.74022 7.89441 8.07462 8.26081 8.53187 9.12437 9.70002 11.18980 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.003547 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.585556 B = 7891.008568 C = 8221.110395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.073 3.927 14 N -0.582 5.582 15 C 0.397 3.603 16 C -0.248 4.248 17 C 0.022 3.978 18 C -0.255 4.255 19 C 0.281 3.719 20 N -0.462 5.462 21 C 0.526 3.474 22 N -0.842 5.842 23 N -0.602 5.602 24 H 0.419 0.581 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.423 0.577 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 3.149 20.298 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.304 5.304 15 C 0.126 3.874 16 C -0.272 4.272 17 C -0.004 4.004 18 C -0.274 4.274 19 C -0.031 4.031 20 N -0.140 5.140 21 C 0.298 3.702 22 N -0.384 5.384 23 N -0.224 5.224 24 H 0.257 0.743 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.256 0.744 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.385 3.024 20.893 21.787 hybrid contribution -0.239 0.418 -1.029 1.136 sum -5.624 3.441 19.864 20.929 Atomic orbital electron populations 1.21700 0.95827 1.00338 1.00085 1.20675 0.94930 0.95962 0.93992 1.21596 0.99676 0.96043 0.99948 1.19133 0.96110 0.95033 0.90075 1.21199 1.30757 1.11893 0.90632 0.92429 1.24998 0.95423 0.95120 0.98974 1.69952 1.37274 1.23169 1.23365 0.86741 0.79170 0.79816 0.82764 1.20372 1.21450 1.20357 1.22275 0.99266 0.95762 0.88370 1.72202 1.16658 1.33654 1.07874 1.18454 0.94198 0.89351 0.85383 1.21405 1.05298 0.96816 1.03727 1.20530 0.92584 0.97792 0.89481 1.14414 1.14937 0.97608 1.00432 1.25134 0.91987 0.93481 0.92530 1.81285 1.13080 1.08982 1.10700 1.17208 0.83803 0.87657 0.81490 1.42148 1.51586 1.25458 1.19205 1.41139 1.41795 1.22514 1.16953 0.74302 0.95109 0.92184 0.94055 0.94172 0.92732 0.94285 0.96655 0.96762 0.93123 0.90703 0.93591 0.83090 0.85196 0.74396 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.06 37.16 0.30 -2.07 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.12 -2.29 8.06 37.16 0.30 -2.00 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.89 7.65 -34.44 -0.26 -14.16 16 6 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.28 5.07 -4.04 -0.02 1.26 16 14 N -0.58 -8.89 9.17 -60.32 -0.55 -9.45 16 15 C 0.40 4.95 7.45 -156.13 -1.16 3.79 16 16 C -0.25 -3.04 9.14 -39.32 -0.36 -3.40 16 17 C 0.02 0.22 9.77 -39.27 -0.38 -0.16 16 18 C -0.26 -2.37 5.78 -106.28 -0.61 -2.99 16 19 C 0.28 2.91 14.01 -22.47 -0.31 2.60 16 20 N -0.46 -5.70 18.54 41.84 0.78 -4.93 16 21 C 0.53 3.77 7.80 -153.58 -1.20 2.58 16 22 N -0.84 -2.95 8.90 31.46 0.28 -2.67 16 23 N -0.60 -5.04 5.40 -11.13 -0.06 -5.10 16 24 H 0.42 2.59 8.86 -40.82 -0.36 2.23 16 25 H 0.03 0.54 7.44 -51.93 -0.39 0.16 16 26 H 0.06 1.26 6.62 -51.92 -0.34 0.91 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 30 H 0.04 0.71 7.60 -51.93 -0.39 0.31 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.05 0.78 5.20 -51.92 -0.27 0.51 16 36 H 0.15 2.02 5.73 -52.49 -0.30 1.72 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.42 1.47 7.58 -40.82 -0.31 1.16 16 39 H 0.41 0.28 8.89 -40.82 -0.36 -0.08 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -33.04 326.34 -7.99 -41.03 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.04 Total: -0.83 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.02 Total: -13.53 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 1.18 Total: -48.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.04 -7.99 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565226815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.371 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds