Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46757 * 2 1 4 4 C 1.52999 * 109.47108 * 240.00192 * 2 1 3 5 5 C 1.50697 * 109.47584 * 60.00034 * 4 2 1 6 6 H 1.08009 * 119.99663 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00199 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00018 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47440 * 59.99989 * 9 7 5 11 11 H 1.48500 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46996 * 299.99766 * 9 7 5 13 13 C 1.52996 * 109.47250 * 119.99498 * 2 1 3 14 14 N 1.46502 * 109.47527 * 300.00490 * 13 2 1 15 15 C 1.31516 * 120.00088 * 114.38562 * 14 13 2 16 16 C 1.41345 * 119.88891 * 353.39909 * 15 14 13 17 17 C 1.35682 * 119.84218 * 179.97438 * 16 15 14 18 18 C 1.41453 * 119.62454 * 359.97438 * 17 16 15 19 19 C 1.43198 * 120.11016 * 179.97438 * 18 17 16 20 20 N 8.37656 * 59.57833 * 114.98166 * 2 1 3 21 21 C 1.39493 * 119.77872 * 0.02562 * 18 17 16 22 22 N 1.36847 * 119.92711 * 179.97438 * 21 18 17 23 23 N 1.36202 * 120.14892 * 0.24803 * 21 18 17 24 24 H 0.96998 * 119.80376 * 179.74523 * 23 21 18 25 25 H 1.09004 * 109.47251 * 300.00108 * 1 2 3 26 26 H 1.09010 * 109.47276 * 59.99949 * 1 2 3 27 27 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47245 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47422 * 299.99740 * 3 2 1 30 30 H 1.09004 * 109.47329 * 59.99939 * 3 2 1 31 31 H 1.08999 * 109.46833 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.46888 * 299.99715 * 4 2 1 33 33 H 0.97003 * 120.00258 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47253 * 179.97438 * 13 2 1 35 35 H 1.09008 * 109.46653 * 60.00529 * 13 2 1 36 36 H 1.07996 * 120.08014 * 359.96651 * 16 15 14 37 37 H 1.08001 * 120.18335 * 179.97438 * 17 16 15 38 38 H 0.97003 * 119.99676 * 359.97438 * 22 21 18 39 39 H 0.96993 * 120.00430 * 179.71836 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6264 -1.5514 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7981 -5.2577 11 1 1.7423 -0.3020 -6.4696 12 1 -0.2379 0.3979 -5.2566 13 6 2.0400 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 0.7072 -0.6330 3.2539 16 6 0.1642 -1.8883 2.8971 17 6 -0.7065 -2.5093 3.7321 18 6 -1.0629 -1.8934 4.9546 19 6 -1.9813 -2.5392 5.8434 20 7 -2.7116 -3.0506 6.5475 21 6 -0.5176 -0.6543 5.2910 22 7 -0.8607 -0.0555 6.4727 23 7 0.3513 -0.0365 4.4434 24 1 0.7246 0.8267 4.6806 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 -0.7208 -1.2494 32 1 1.6766 -1.7489 -1.2492 33 1 2.8602 -1.8833 -4.7336 34 1 3.1300 -0.7215 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.4417 -2.3520 1.9621 37 1 -1.1250 -3.4683 3.4648 38 1 -1.4828 -0.4925 7.0751 39 1 -0.4791 0.8041 6.7096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565226815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = 52.547968 kcal Electronic energy + Delta-G solvation = -20463.495751 eV Core-core repulsion = 17405.478952 eV Total energy + Delta-G solvation = -3058.016799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65208 -38.99744 -37.56221 -36.60523 -34.76410 -34.37144 -33.31681 -29.60843 -28.85022 -27.83667 -27.37314 -25.08347 -24.51560 -22.90057 -20.86656 -19.56705 -19.04132 -18.29577 -17.85864 -17.18143 -16.65085 -16.36557 -16.09975 -16.07439 -15.30114 -15.02808 -14.65833 -14.25831 -14.22545 -13.95567 -13.85871 -13.60088 -13.24480 -12.92957 -12.75965 -12.70919 -12.64124 -12.40540 -12.20304 -12.16712 -11.90791 -11.34209 -11.17467 -10.91433 -10.87968 -10.46234 -9.96169 -9.83561 -8.11348 -7.94599 -6.17064 0.26458 0.58390 1.29595 1.42646 1.44890 1.52190 1.81771 2.17260 2.46753 2.71408 2.93089 3.23270 3.23902 3.78225 4.11267 4.13034 4.32779 4.39218 4.42518 4.53935 4.81290 4.97157 5.00965 5.02477 5.13252 5.22147 5.26671 5.36341 5.49168 5.53021 5.56030 5.58222 5.60287 5.69413 5.87498 5.94333 5.96835 6.30266 6.40215 6.47523 6.76419 6.97100 7.23578 7.49772 9.01806 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.003547 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.585556 B = 7891.008568 C = 8221.110395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.105 4.105 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.063 0.937 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.086 3.914 14 N -0.615 5.615 15 C 0.415 3.585 16 C -0.290 4.290 17 C 0.050 3.950 18 C -0.272 4.272 19 C 0.302 3.698 20 N -0.495 5.495 21 C 0.551 3.449 22 N -0.814 5.814 23 N -0.588 5.588 24 H 0.433 0.567 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.059 0.941 31 H -0.015 1.015 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.429 0.571 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 4.622 22.399 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C -0.162 4.162 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.045 4.045 14 N -0.339 5.339 15 C 0.146 3.854 16 C -0.315 4.315 17 C 0.024 3.976 18 C -0.290 4.290 19 C -0.009 4.009 20 N -0.175 5.175 21 C 0.319 3.681 22 N -0.356 5.356 23 N -0.211 5.211 24 H 0.275 0.725 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.003 0.997 32 H 0.007 0.993 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.263 0.737 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.935 4.544 23.079 24.523 hybrid contribution 0.140 -0.080 -1.427 1.436 sum -6.795 4.463 21.652 23.128 Atomic orbital electron populations 1.21536 0.94862 1.00192 0.99975 1.20537 0.95604 0.95946 0.93237 1.21477 0.99080 0.95637 1.00001 1.18996 0.94077 0.94135 0.92395 1.21578 1.30275 1.11893 0.91567 0.91941 1.25883 0.95714 0.95902 1.02417 1.70096 1.38774 1.24846 1.24065 0.85665 0.78944 0.78785 0.78656 1.19444 1.21252 1.19328 1.21882 0.98316 0.95607 0.88649 1.72180 1.19854 1.33751 1.08131 1.18537 0.92270 0.89088 0.85524 1.21186 1.08097 0.97881 1.04309 1.20680 0.90348 0.97636 0.88924 1.14352 1.15794 0.98617 1.00213 1.25076 0.91323 0.92695 0.91852 1.81326 1.14315 1.09946 1.11911 1.17084 0.82273 0.86847 0.81887 1.42187 1.50229 1.25781 1.17370 1.40977 1.41430 1.22894 1.15751 0.72550 0.93084 0.94068 0.94265 0.94979 0.94421 0.92174 0.99667 0.99349 0.93146 0.92365 0.93703 0.84958 0.84065 0.73662 0.73848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.06 71.98 0.58 -3.63 16 2 C -0.05 -2.19 0.60 -52.18 -0.03 -2.22 16 3 C -0.10 -4.19 8.06 71.98 0.58 -3.61 16 4 C 0.04 2.19 4.04 29.85 0.12 2.31 16 5 C -0.51 -28.99 7.65 25.60 0.20 -28.79 16 6 H 0.06 3.39 5.68 -2.91 -0.02 3.38 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -57.63 13.29 21.44 0.28 -57.34 16 9 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.09 3.12 5.07 86.38 0.44 3.56 16 14 N -0.62 -18.29 9.17 -344.76 -3.16 -21.45 16 15 C 0.41 9.68 7.45 134.30 1.00 10.68 16 16 C -0.29 -6.85 9.14 22.44 0.21 -6.64 16 17 C 0.05 0.93 9.77 22.47 0.22 1.15 16 18 C -0.27 -4.26 5.78 -20.94 -0.12 -4.38 16 19 C 0.30 5.48 14.01 88.33 1.24 6.71 16 20 N -0.50 -11.23 18.54 19.00 0.35 -10.88 16 21 C 0.55 5.85 7.80 132.69 1.04 6.89 16 22 N -0.81 -2.12 8.90 -54.37 -0.48 -2.60 16 23 N -0.59 -7.93 5.40 -189.11 -1.02 -8.95 16 24 H 0.43 3.68 8.86 -92.71 -0.82 2.86 16 25 H 0.05 1.75 7.44 -2.38 -0.02 1.73 16 26 H 0.04 1.72 6.62 -2.38 -0.02 1.70 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 30 H 0.06 2.13 7.60 -2.38 -0.02 2.12 16 31 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.60 5.20 -2.38 -0.01 1.59 16 36 H 0.13 3.65 5.73 -2.91 -0.02 3.63 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.43 1.15 7.58 -92.71 -0.70 0.45 16 39 H 0.43 -1.50 8.89 -92.71 -0.82 -2.33 16 Total: -1.00 -73.47 326.34 2.69 -70.78 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -1.23 Total: 1.20 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 5.92 Total: -17.65 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.03 Total: -101.23 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.47 2.69 -70.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565226815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.329 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds