Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46773 * 2 1 4 4 N 1.46900 * 109.47066 * 120.00041 * 2 1 3 5 5 C 1.46896 * 110.99882 * 171.42835 * 4 2 1 6 6 C 1.50696 * 109.46978 * 293.95172 * 5 4 2 7 7 H 1.08001 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00193 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99726 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00175 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47291 * 59.99519 * 10 8 6 12 12 H 1.48501 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46783 * 299.99376 * 10 8 6 14 14 C 1.46904 * 110.99907 * 295.38193 * 4 2 1 15 15 C 1.50695 * 109.47236 * 77.23329 * 14 4 2 16 16 C 1.35966 * 126.69547 * 235.36707 * 15 14 4 17 17 N 1.33380 * 110.97062 * 179.81859 * 16 15 14 18 18 C 1.31985 * 110.79944 * 0.46638 * 17 16 15 19 19 N 1.36572 * 135.03044 * 179.72767 * 18 17 16 20 20 H 0.97000 * 120.59251 * 359.97433 * 19 18 17 21 21 C 1.34339 * 118.81218 * 180.02562 * 19 18 17 22 22 C 1.37687 * 121.24917 * 359.97438 * 21 19 18 23 23 N 1.32017 * 121.92027 * 359.97438 * 22 21 19 24 24 C 1.32180 * 120.28386 * 0.03246 * 23 22 21 25 25 H 1.09002 * 109.47277 * 313.86312 * 1 2 3 26 26 H 1.09000 * 109.47538 * 73.86104 * 1 2 3 27 27 H 1.09002 * 109.47483 * 193.86214 * 1 2 3 28 28 H 1.08999 * 109.46743 * 239.99976 * 2 1 3 29 29 H 1.09003 * 109.46734 * 172.59392 * 3 2 1 30 30 H 1.08993 * 109.47003 * 292.59454 * 3 2 1 31 31 H 1.08995 * 109.47356 * 52.59647 * 3 2 1 32 32 H 1.09005 * 109.47179 * 53.95202 * 5 4 2 33 33 H 1.09000 * 109.46850 * 173.95115 * 5 4 2 34 34 H 0.97003 * 119.99912 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47139 * 197.23622 * 14 4 2 36 36 H 1.09007 * 109.46967 * 317.23652 * 14 4 2 37 37 H 1.08004 * 124.51654 * 0.02562 * 16 15 14 38 38 H 1.07996 * 119.37787 * 179.97438 * 21 19 18 39 39 H 1.07995 * 119.04007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4737 -0.8917 1.1356 6 6 3.8016 -1.8427 0.0136 7 1 3.0092 -2.2574 -0.5919 8 6 5.1133 -2.1835 -0.2402 9 7 6.0783 -1.6782 0.4967 10 14 5.5198 -3.3618 -1.6314 11 1 5.0416 -2.7933 -2.9173 12 1 6.9896 -3.5642 -1.6952 13 1 4.8513 -4.6652 -1.3874 14 6 1.6409 0.0344 2.4185 15 6 0.1879 -0.2218 2.7252 16 6 -0.7838 0.7138 2.8957 17 7 -1.9601 0.1393 3.1514 18 6 -1.8441 -1.1752 3.1761 19 7 -2.7010 -2.2169 3.3898 20 1 -3.6390 -2.0543 3.5761 21 6 -2.2215 -3.4708 3.3385 22 6 -0.8925 -3.7170 3.0757 23 7 -0.0305 -2.7402 2.8623 24 6 -0.4288 -1.4803 2.8969 25 1 -0.3634 0.7121 0.7409 26 1 -0.3634 0.2856 -0.9871 27 1 -0.3634 -0.9977 0.2462 28 1 1.8933 -0.5138 -0.8900 29 1 3.1219 1.4454 0.1325 30 1 1.7888 1.9167 -0.9487 31 1 1.5725 1.9932 0.8163 32 1 3.9639 0.0652 0.9559 33 1 3.8251 -1.3083 2.0795 34 1 7.0011 -1.9182 0.3185 35 1 2.2542 -0.3089 3.2517 36 1 1.7975 1.1026 2.2680 37 1 -0.6251 1.7800 2.8293 38 1 -2.8910 -4.3013 3.5065 39 1 -0.5452 -4.7391 3.0432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572174167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = 116.346272 kcal Electronic energy + Delta-G solvation = -21556.725782 eV Core-core repulsion = 18501.475485 eV Total energy + Delta-G solvation = -3055.250297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73362 -38.73551 -37.17738 -35.36190 -32.66197 -31.02879 -29.89835 -29.68693 -26.59754 -26.38810 -24.98890 -24.20201 -22.60420 -21.91423 -20.65374 -18.79964 -18.09502 -16.91592 -16.54339 -15.92857 -15.54668 -15.09864 -14.77871 -14.33646 -13.91819 -13.73611 -13.39382 -12.83993 -12.69353 -12.48227 -12.16220 -12.00398 -11.87935 -11.68666 -11.16950 -10.96193 -10.74597 -10.70232 -10.40013 -10.33664 -10.27177 -9.83177 -9.56668 -9.05447 -8.78082 -8.29186 -8.09279 -7.43717 -6.90379 -5.88884 -3.88024 0.14665 1.41363 2.21833 3.41346 3.44675 3.47325 3.49635 3.82422 4.02335 4.36059 4.48925 4.54508 4.68029 5.16922 5.35480 5.43193 5.46778 5.75663 5.89093 5.90314 6.00298 6.09965 6.20302 6.28503 6.32133 6.39687 6.48424 6.53772 6.65859 6.72478 6.83366 6.99996 7.10533 7.16144 7.54647 7.60638 7.97110 8.04744 8.05874 8.30968 8.48198 8.78081 9.19580 9.74657 11.21948 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.005657 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.944170 B = 4948.599221 C = 5696.480317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 C -0.182 4.182 4 N -0.516 5.516 5 C 0.193 3.807 6 C -0.496 4.496 7 H 0.060 0.940 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.117 3.883 15 C -0.140 4.140 16 C 0.067 3.933 17 N -0.525 5.525 18 C 0.197 3.803 19 N -0.470 5.470 20 H 0.422 0.578 21 C 0.075 3.925 22 C -0.008 4.008 23 N -0.338 5.338 24 C 0.098 3.902 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.047 0.953 32 H -0.006 1.006 33 H 0.028 0.972 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 -1.223 6.165 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.240 4.240 4 N -0.239 5.239 5 C 0.068 3.932 6 C -0.535 4.535 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.011 4.011 15 C -0.146 4.146 16 C -0.081 4.081 17 N -0.245 5.245 18 C -0.061 4.061 19 N -0.066 5.066 20 H 0.260 0.740 21 C -0.068 4.068 22 C -0.165 4.165 23 N -0.049 5.049 24 C -0.053 4.053 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.012 0.988 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.180 0.820 38 H 0.199 0.801 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.110 -1.377 6.182 19.186 hybrid contribution 0.107 -0.164 -0.710 0.737 sum -18.004 -1.540 5.472 18.880 Atomic orbital electron populations 1.22084 0.96443 1.01451 0.99768 1.21512 0.93480 0.91710 0.95597 1.22433 1.02355 0.98897 1.00364 1.62273 1.17171 1.45558 0.98935 1.19740 0.80451 0.95409 0.97621 1.21121 0.91721 1.25953 1.14682 0.92181 1.24952 0.96407 0.96603 0.96670 1.69953 0.99696 1.44728 1.39759 0.86627 0.76871 0.81648 0.82616 1.20462 1.21514 1.20323 1.20427 0.89619 0.96438 0.94648 1.20086 0.97429 0.89643 1.07454 1.22265 0.87197 0.99045 0.99560 1.69584 1.27685 1.02025 1.25242 1.21394 0.90273 0.90136 1.04286 1.40328 1.12285 1.04131 1.49867 0.74005 1.23310 0.99013 0.85694 0.98788 1.22559 0.87577 1.00056 1.06335 1.67244 1.36710 0.99484 1.01437 1.21044 0.89300 0.91646 1.03348 0.92526 0.94454 0.93137 0.89632 0.91769 0.93537 0.93400 0.98804 0.95376 0.93109 0.91117 0.94045 0.81985 0.80085 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.89 37.16 0.29 -2.26 16 2 C 0.09 1.78 2.79 -67.71 -0.19 1.59 16 3 C -0.18 -3.39 8.42 37.16 0.31 -3.08 16 4 N -0.52 -11.62 4.44 -229.51 -1.02 -12.64 16 5 C 0.19 5.15 4.57 -4.98 -0.02 5.12 16 6 C -0.50 -14.29 8.39 -34.44 -0.29 -14.57 16 7 H 0.06 1.74 7.16 -52.49 -0.38 1.36 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.12 2.31 5.31 -4.98 -0.03 2.29 16 15 C -0.14 -2.51 3.40 -104.32 -0.36 -2.87 16 16 C 0.07 1.07 9.63 -17.69 -0.17 0.90 16 17 N -0.52 -8.34 11.17 -11.04 -0.12 -8.46 16 18 C 0.20 2.87 8.65 -154.28 -1.33 1.54 16 19 N -0.47 -4.26 5.35 -10.45 -0.06 -4.31 16 20 H 0.42 2.24 8.94 -40.82 -0.36 1.88 16 21 C 0.07 0.54 11.18 -16.66 -0.19 0.35 16 22 C -0.01 -0.09 11.08 -17.67 -0.20 -0.28 16 23 N -0.34 -5.84 10.48 -9.76 -0.10 -5.94 16 24 C 0.10 1.72 6.82 -82.85 -0.56 1.15 16 25 H 0.06 0.98 4.71 -51.93 -0.24 0.73 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.00 7.32 -51.93 -0.38 0.62 16 28 H 0.09 1.98 6.67 -51.93 -0.35 1.63 16 29 H 0.06 1.34 6.25 -51.93 -0.32 1.02 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.81 6.31 -51.93 -0.33 0.48 16 32 H -0.01 -0.16 6.21 -51.93 -0.32 -0.48 16 33 H 0.03 0.82 7.82 -51.93 -0.41 0.41 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 36 H 0.04 0.76 5.53 -51.92 -0.29 0.47 16 37 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -35.93 312.57 -8.73 -44.66 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.03 Total: -0.01 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.82 Total: -8.65 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.56 Total: -57.94 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.93 -8.73 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572174167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.003 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds