Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 C 1.53004 * 109.47070 * 305.00149 * 6 5 4 8 8 N 1.46905 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.46894 * 110.99841 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47317 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47050 * 54.99705 * 10 9 8 12 12 C 1.47207 * 109.47292 * 295.00307 * 10 9 8 13 13 N 9.49880 * 162.44899 * 356.91658 * 2 1 3 14 14 C 1.52994 * 109.47700 * 174.99995 * 10 9 8 15 15 C 1.50700 * 109.47571 * 185.00074 * 14 10 9 16 16 H 1.07992 * 119.99859 * 359.97438 * 15 14 10 17 17 C 1.37879 * 120.00119 * 180.02562 * 15 14 10 18 18 N 1.31518 * 120.00001 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99861 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47379 * 89.99811 * 19 17 15 21 21 H 1.48506 * 109.46927 * 209.99369 * 19 17 15 22 22 H 1.48498 * 109.46860 * 329.99326 * 19 17 15 23 23 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 24 24 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 26 26 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 27 27 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 28 28 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 29 29 H 1.09009 * 109.47095 * 64.99754 * 6 5 4 30 30 H 1.08997 * 109.47591 * 185.00166 * 6 5 4 31 31 H 1.08994 * 109.47174 * 300.00047 * 7 6 5 32 32 H 1.08999 * 109.47180 * 60.00056 * 7 6 5 33 33 H 1.00903 * 110.99481 * 56.05137 * 8 7 6 34 34 H 1.09000 * 109.47621 * 300.00520 * 9 8 7 35 35 H 1.09003 * 109.47251 * 60.00564 * 9 8 7 36 36 H 1.09003 * 109.47575 * 305.00264 * 14 10 9 37 37 H 1.09002 * 109.46993 * 65.00191 * 14 10 9 38 38 H 0.96998 * 120.00057 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99992 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 6 6.1935 0.8776 -1.1902 8 7 7.6625 0.8780 -1.1953 9 6 8.1847 1.6617 -2.3227 10 6 9.7143 1.6383 -2.2950 11 1 10.0617 0.6052 -2.2858 12 6 10.1938 2.3279 -1.0860 13 7 10.5636 2.8603 -0.1541 14 6 10.2579 2.3482 -3.5364 15 6 11.7589 2.2188 -3.5724 16 1 12.2736 1.6840 -2.7880 17 6 12.4750 2.7839 -4.6063 18 7 11.8481 3.4356 -5.5613 19 14 14.3355 2.6228 -4.6512 20 1 14.7081 1.3929 -5.3955 21 1 14.9187 3.8079 -5.3300 22 1 14.8587 2.5395 -3.2639 23 6 3.4891 -1.1442 0.0015 24 7 2.1677 -1.1442 0.0005 25 1 -0.3632 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5136 28 1 1.6590 2.1338 -0.0004 29 1 6.0547 0.4910 0.9246 30 1 6.0509 -0.9702 -0.0919 31 1 5.8267 0.4405 -2.1188 32 1 5.8306 1.9016 -1.1023 33 1 8.0243 -0.0638 -1.2109 34 1 7.8320 1.2303 -3.2595 35 1 7.8353 2.6911 -2.2424 36 1 9.8324 1.8931 -4.4309 37 1 9.9849 3.4029 -3.5006 38 1 12.3519 3.8329 -6.2888 39 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572714433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = 51.159798 kcal Electronic energy + Delta-G solvation = -19279.544595 eV Core-core repulsion = 16221.467600 eV Total energy + Delta-G solvation = -3058.076995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45671 -37.54413 -35.96557 -34.78686 -33.77908 -33.30779 -31.95636 -30.35624 -27.51924 -25.90968 -25.03263 -23.47348 -22.39785 -21.87944 -21.37740 -18.03031 -17.14276 -16.64831 -16.36705 -16.05364 -15.65536 -15.10371 -14.76649 -14.32947 -14.24901 -13.55576 -13.41540 -13.27760 -12.93604 -12.84656 -12.44416 -12.41465 -12.10985 -11.93118 -11.81363 -11.62210 -11.38105 -11.29586 -11.13083 -11.00111 -10.67553 -10.52654 -10.23872 -9.57104 -9.33043 -9.30433 -9.19870 -8.46114 -8.33294 -6.09528 -4.12690 0.44574 0.84271 3.29183 3.33218 3.36251 3.41084 3.65221 3.76539 3.85665 3.87213 4.06244 4.23567 4.40958 4.52019 4.68841 4.87726 4.93641 5.00446 5.11340 5.13629 5.17528 5.27589 5.28580 5.42490 5.55244 5.56669 5.72038 5.88752 5.96449 6.02683 6.10368 6.39239 6.49817 7.00041 7.05660 7.42054 7.47435 7.50109 7.53821 7.85803 8.23220 8.60676 8.92210 9.52768 11.01387 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.041445 B = 0.002523 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.426094 B =11094.507135 C =11297.630068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.066 3.934 3 C 0.057 3.943 4 N -0.429 5.429 5 C 0.082 3.918 6 C -0.066 4.066 7 C 0.069 3.931 8 N -0.694 5.694 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.057 3.943 24 N -0.439 5.439 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.340 0.660 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.017 -9.461 8.049 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.074 4.074 3 C -0.104 4.104 4 N -0.144 5.144 5 C -0.059 4.059 6 C -0.104 4.104 7 C -0.061 4.061 8 N -0.325 5.325 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.062 4.062 13 N -0.155 5.155 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.103 4.103 24 N -0.154 5.154 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.186 0.814 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -21.379 -8.029 9.740 24.827 hybrid contribution 0.749 -0.815 -1.275 1.689 sum -20.630 -8.844 8.465 23.988 Atomic orbital electron populations 1.20671 0.87758 1.03866 1.03477 1.22326 0.98511 0.89794 0.96808 1.23648 0.90663 0.99213 0.96877 1.68294 1.08526 1.29439 1.08122 1.22283 0.98206 0.89577 0.95808 1.20502 0.86723 1.01825 1.01389 1.21813 0.88033 1.01000 0.95218 1.60492 1.06622 1.18869 1.46470 1.22059 0.93750 0.99059 0.91376 1.19210 0.92735 0.99684 0.89596 0.88297 1.28819 0.91607 0.92710 0.93060 1.80948 1.10583 1.10640 1.13371 1.19171 0.96202 0.96042 0.89355 1.21146 0.91565 1.35206 1.08493 0.92467 1.24964 0.98628 0.94928 0.95526 1.69940 1.35750 1.35524 1.11842 0.86584 0.85521 0.77649 0.78288 1.20490 1.21158 1.19832 1.23641 0.90473 0.99308 0.96914 1.68286 1.08783 1.29422 1.08947 0.90015 0.90257 0.90217 0.81440 0.88564 0.89803 0.95376 0.89920 0.84204 0.93265 0.90424 0.94468 0.95531 0.92800 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 36.01 0.37 -0.14 16 2 C 0.07 0.56 6.79 -82.41 -0.56 0.01 16 3 C 0.06 0.50 10.88 -17.37 -0.19 0.31 16 4 N -0.43 -4.75 10.06 -9.29 -0.09 -4.84 16 5 C 0.08 0.81 6.18 -82.41 -0.51 0.31 16 6 C -0.07 -0.60 5.89 -27.88 -0.16 -0.77 16 7 C 0.07 0.76 5.55 -3.82 -0.02 0.74 16 8 N -0.69 -8.74 6.20 -113.78 -0.71 -9.45 16 9 C 0.07 0.99 5.05 -3.83 -0.02 0.97 16 10 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 11 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 12 C 0.25 5.35 13.67 -20.78 -0.28 5.07 16 13 N -0.48 -10.98 18.53 42.12 0.78 -10.20 16 14 C 0.03 0.71 4.42 -27.89 -0.12 0.59 16 15 C -0.53 -14.00 8.60 -34.44 -0.30 -14.30 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 C 0.06 0.52 10.85 -17.38 -0.19 0.33 16 24 N -0.44 -4.43 10.42 -9.29 -0.10 -4.52 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 33 H 0.34 3.66 8.73 -39.29 -0.34 3.32 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.17 1.06 7.95 -52.49 -0.42 0.64 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -32.73 343.08 -7.30 -40.03 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.76 Total: -2.31 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.30 Total: -5.32 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.62 Total: -53.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.73 -7.30 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572714433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.185 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds