Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 C 1.53004 * 109.47070 * 305.00149 * 6 5 4 8 8 N 1.46905 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.46894 * 110.99841 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47317 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47050 * 54.99705 * 10 9 8 12 12 C 1.47207 * 109.47292 * 295.00307 * 10 9 8 13 13 N 9.49880 * 162.44899 * 356.91658 * 2 1 3 14 14 C 1.52994 * 109.47700 * 174.99995 * 10 9 8 15 15 C 1.50700 * 109.47571 * 185.00074 * 14 10 9 16 16 H 1.07992 * 119.99859 * 359.97438 * 15 14 10 17 17 C 1.37879 * 120.00119 * 180.02562 * 15 14 10 18 18 N 1.31518 * 120.00001 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99861 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47379 * 89.99811 * 19 17 15 21 21 H 1.48506 * 109.46927 * 209.99369 * 19 17 15 22 22 H 1.48498 * 109.46860 * 329.99326 * 19 17 15 23 23 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 24 24 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 26 26 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 27 27 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 28 28 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 29 29 H 1.09009 * 109.47095 * 64.99754 * 6 5 4 30 30 H 1.08997 * 109.47591 * 185.00166 * 6 5 4 31 31 H 1.08994 * 109.47174 * 300.00047 * 7 6 5 32 32 H 1.08999 * 109.47180 * 60.00056 * 7 6 5 33 33 H 1.00903 * 110.99481 * 56.05137 * 8 7 6 34 34 H 1.09000 * 109.47621 * 300.00520 * 9 8 7 35 35 H 1.09003 * 109.47251 * 60.00564 * 9 8 7 36 36 H 1.09003 * 109.47575 * 305.00264 * 14 10 9 37 37 H 1.09002 * 109.46993 * 65.00191 * 14 10 9 38 38 H 0.96998 * 120.00057 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99992 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 6 6.1935 0.8776 -1.1902 8 7 7.6625 0.8780 -1.1953 9 6 8.1847 1.6617 -2.3227 10 6 9.7143 1.6383 -2.2950 11 1 10.0617 0.6052 -2.2858 12 6 10.1938 2.3279 -1.0860 13 7 10.5636 2.8603 -0.1541 14 6 10.2579 2.3482 -3.5364 15 6 11.7589 2.2188 -3.5724 16 1 12.2736 1.6840 -2.7880 17 6 12.4750 2.7839 -4.6063 18 7 11.8481 3.4356 -5.5613 19 14 14.3355 2.6228 -4.6512 20 1 14.7081 1.3929 -5.3955 21 1 14.9187 3.8079 -5.3300 22 1 14.8587 2.5395 -3.2639 23 6 3.4891 -1.1442 0.0015 24 7 2.1677 -1.1442 0.0005 25 1 -0.3632 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5136 28 1 1.6590 2.1338 -0.0004 29 1 6.0547 0.4910 0.9246 30 1 6.0509 -0.9702 -0.0919 31 1 5.8267 0.4405 -2.1188 32 1 5.8306 1.9016 -1.1023 33 1 8.0243 -0.0638 -1.2109 34 1 7.8320 1.2303 -3.2595 35 1 7.8353 2.6911 -2.2424 36 1 9.8324 1.8931 -4.4309 37 1 9.9849 3.4029 -3.5006 38 1 12.3519 3.8329 -6.2888 39 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572714433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = 28.979966 kcal Electronic energy + Delta-G solvation = -19280.506384 eV Core-core repulsion = 16221.467600 eV Total energy + Delta-G solvation = -3059.038784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11435 -38.87444 -37.15237 -35.85378 -35.30212 -34.31620 -33.34925 -31.36689 -28.72275 -27.16644 -25.69706 -24.62551 -23.51070 -23.46734 -22.25869 -18.71557 -18.65686 -18.34470 -17.27168 -16.76287 -16.61219 -16.49152 -15.93132 -15.58615 -15.43316 -14.73821 -14.43685 -14.23886 -13.97906 -13.87274 -13.72084 -13.41030 -13.28766 -13.12083 -13.08114 -12.94795 -12.64374 -12.52482 -12.47570 -12.32129 -12.14760 -11.96102 -11.87528 -11.39151 -11.13765 -10.54612 -9.99480 -9.93758 -9.34091 -8.19109 -6.27368 -0.19931 0.15888 1.40674 1.42832 1.52101 2.09168 2.15769 2.41968 2.66693 2.99608 3.16279 3.23983 3.30022 3.37157 3.55914 3.88274 4.03183 4.19173 4.24041 4.30662 4.38649 4.43406 4.57197 4.70384 4.76366 4.77321 4.84011 4.86248 5.01056 5.09133 5.12821 5.17107 5.47507 5.49560 5.62580 5.79684 5.99217 6.21492 6.35255 6.57946 6.84227 6.84309 6.95028 7.41293 8.91876 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.041445 B = 0.002523 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.426094 B =11094.507135 C =11297.630068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.063 3.937 3 C 0.047 3.953 4 N -0.460 5.460 5 C 0.067 3.933 6 C -0.057 4.057 7 C 0.076 3.924 8 N -0.699 5.699 9 C 0.079 3.921 10 C 0.021 3.979 11 H 0.125 0.875 12 C 0.265 3.735 13 N -0.515 5.515 14 C 0.036 3.964 15 C -0.538 4.538 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.055 3.945 24 N -0.463 5.463 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.192 0.808 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.354 0.646 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.036 0.964 37 H -0.002 1.002 38 H 0.264 0.736 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.725 -10.963 8.245 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.113 4.113 4 N -0.175 5.175 5 C -0.073 4.073 6 C -0.096 4.096 7 C -0.053 4.053 8 N -0.332 5.332 9 C -0.051 4.051 10 C -0.001 4.001 11 H 0.142 0.858 12 C -0.051 4.051 13 N -0.193 5.193 14 C -0.003 4.003 15 C -0.576 4.576 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.104 4.104 24 N -0.178 5.178 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.209 0.791 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -22.089 -9.555 9.945 26.041 hybrid contribution 0.895 -0.332 -1.325 1.633 sum -21.194 -9.887 8.620 24.925 Atomic orbital electron populations 1.20776 0.85456 1.04905 1.04375 1.22858 1.00065 0.89367 0.95456 1.24086 0.90196 1.00486 0.96561 1.68268 1.09794 1.30418 1.08996 1.22389 0.98440 0.89771 0.96715 1.20436 0.86454 1.02902 0.99767 1.21714 0.86819 1.00288 0.96507 1.60384 1.07698 1.19687 1.45391 1.21834 0.91066 0.99114 0.93079 1.19182 0.94985 0.99798 0.86093 0.85757 1.29354 0.90607 0.91982 0.93131 1.80948 1.11902 1.11718 1.14723 1.19000 0.94708 0.94922 0.91623 1.21566 0.93488 1.34496 1.08044 0.92596 1.25745 1.02801 0.94936 0.95498 1.70039 1.37267 1.36630 1.12535 0.85666 0.80656 0.78002 0.78072 1.19043 1.21154 1.20063 1.24016 0.90432 0.99987 0.95999 1.68360 1.09329 1.30240 1.09905 0.89015 0.90382 0.88017 0.79088 0.89755 0.87017 0.94650 0.92074 0.82614 0.91520 0.91770 0.94591 0.98336 0.92745 0.78908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.19 71.24 0.73 -0.09 16 2 C 0.06 0.99 6.79 42.55 0.29 1.28 16 3 C 0.05 0.78 10.88 84.69 0.92 1.71 16 4 N -0.46 -9.92 10.06 -183.30 -1.84 -11.76 16 5 C 0.07 1.27 6.18 42.54 0.26 1.53 16 6 C -0.06 -0.96 5.89 29.85 0.18 -0.78 16 7 C 0.08 1.59 5.55 86.30 0.48 2.07 16 8 N -0.70 -16.39 6.20 -513.90 -3.19 -19.58 16 9 C 0.08 2.23 5.05 86.30 0.44 2.66 16 10 C 0.02 0.74 2.35 -12.60 -0.03 0.72 16 11 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 12 C 0.27 10.98 13.67 89.45 1.22 12.21 16 13 N -0.52 -23.55 18.53 20.00 0.37 -23.18 16 14 C 0.04 1.67 4.42 29.85 0.13 1.80 16 15 C -0.54 -28.42 8.60 25.60 0.22 -28.20 16 16 H 0.06 2.91 7.59 -2.91 -0.02 2.89 16 17 C 0.01 0.49 5.46 84.65 0.46 0.95 16 18 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 19 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C 0.06 0.92 10.85 84.67 0.92 1.84 16 24 N -0.46 -8.75 10.42 -183.30 -1.91 -10.66 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.39 8.09 -2.39 -0.02 0.37 16 28 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.11 1.22 7.89 -2.39 -0.02 1.20 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.55 7.96 -2.39 -0.02 1.53 16 33 H 0.35 6.66 8.73 -89.69 -0.78 5.87 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.19 1.99 7.95 -2.91 -0.02 1.97 16 Total: -1.00 -70.30 343.08 2.22 -68.08 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.27 Total: 6.96 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.22 Total: -2.31 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.29 Total: -118.22 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.30 2.22 -68.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572714433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.056 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds