Wall clock time and date at job start Mon Mar 30 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47150 * 270.00215 * 3 2 1 5 5 H 1.48502 * 109.47106 * 30.00213 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00112 * 3 2 1 7 7 C 1.37885 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99723 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.46890 * 111.00219 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47363 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.53205 * 54.89989 * 12 11 10 14 14 C 1.53113 * 109.50227 * 294.80531 * 12 11 10 15 15 C 1.53126 * 109.16099 * 182.40128 * 14 12 11 16 16 C 1.53036 * 109.27439 * 57.65435 * 15 14 12 17 17 N 1.46842 * 109.52507 * 300.81704 * 16 15 14 18 18 C 1.39675 * 111.00247 * 185.84095 * 17 16 15 19 19 C 1.38914 * 120.07282 * 55.79409 * 18 17 16 20 20 C 1.38100 * 119.92419 * 180.02562 * 19 18 17 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 C 1.46851 * 111.19488 * 61.74384 * 17 16 15 25 25 H 0.96996 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47331 * 59.99981 * 9 7 2 27 27 H 1.09000 * 109.47013 * 299.99801 * 9 7 2 28 28 H 1.00898 * 110.99797 * 303.95631 * 10 9 7 29 29 H 1.09001 * 109.47227 * 60.00097 * 11 10 9 30 30 H 1.09002 * 109.47604 * 299.99765 * 11 10 9 31 31 H 1.09001 * 109.52655 * 302.30619 * 14 12 11 32 32 H 1.09009 * 109.52415 * 62.49617 * 14 12 11 33 33 H 1.09006 * 109.49953 * 177.59648 * 15 14 12 34 34 H 1.08996 * 109.50410 * 297.71304 * 15 14 12 35 35 H 1.09002 * 109.45809 * 180.80460 * 16 15 14 36 36 H 1.08995 * 109.46614 * 60.84054 * 16 15 14 37 37 H 1.07999 * 120.03435 * 0.04102 * 19 18 17 38 38 H 1.08001 * 119.95830 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 41 41 H 1.07999 * 120.04053 * 180.27967 * 23 22 21 42 42 H 1.09008 * 109.45813 * 58.27720 * 24 17 16 43 43 H 1.09002 * 109.46381 * 178.23617 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5304 -6.0430 -0.0006 13 1 3.2138 -5.9178 0.8394 14 6 3.3214 -6.0170 -1.3113 15 6 4.3028 -7.1924 -1.3294 16 6 3.5268 -8.5010 -1.1646 17 7 2.7877 -8.4768 0.1041 18 6 2.1736 -9.7071 0.3492 19 6 2.9313 -10.8712 0.3713 20 6 2.3209 -12.0861 0.6135 21 6 0.9570 -12.1445 0.8343 22 6 0.1989 -10.9883 0.8077 23 6 0.8038 -9.7694 0.5717 24 6 1.8059 -7.3850 0.1258 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8406 -3.5486 -0.7819 29 1 0.8803 -4.9817 -0.8897 30 1 0.8809 -4.9813 0.8903 31 1 2.6345 -6.1031 -2.1532 32 1 3.8738 -5.0801 -1.3850 33 1 4.8389 -7.2041 -2.2785 34 1 5.0140 -7.0853 -0.5104 35 1 4.2240 -9.3389 -1.1628 36 1 2.8256 -8.6141 -1.9913 37 1 3.9966 -10.8261 0.1996 38 1 2.9094 -12.9915 0.6304 39 1 0.4821 -13.0960 1.0230 40 1 -0.8668 -11.0381 0.9757 41 1 0.2119 -8.8662 0.5556 42 1 1.1127 -7.5034 -0.7071 43 1 1.2530 -7.4123 1.0648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572753013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:44 Heat of formation + Delta-G solvation = 21.193291 kcal Electronic energy + Delta-G solvation = -20631.374528 eV Core-core repulsion = 17675.538431 eV Total energy + Delta-G solvation = -2955.836096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49803 -38.19576 -35.69807 -33.59067 -32.51005 -31.54450 -30.57938 -29.11718 -26.96519 -24.91065 -24.44055 -22.67254 -21.74606 -21.33513 -20.69348 -19.55928 -17.73228 -16.42058 -15.85899 -15.61115 -15.17324 -14.96563 -14.60407 -14.50528 -14.04282 -13.75912 -13.66961 -13.60144 -13.13389 -12.85850 -12.61820 -12.44749 -11.87796 -11.64268 -11.47836 -11.37967 -11.12838 -11.01482 -10.79390 -10.77283 -10.47436 -10.39452 -10.14676 -9.83678 -9.74616 -9.15848 -9.08604 -8.48279 -7.92564 -7.28643 -6.03217 -4.05164 1.24770 1.25965 3.31760 3.37819 3.42572 3.47374 3.77107 4.43177 4.62455 4.72132 4.81320 4.87169 4.94404 4.97878 5.01806 5.26461 5.27473 5.32744 5.37247 5.41428 5.48235 5.50086 5.58953 5.71422 5.74140 5.79889 5.88795 5.92978 6.04539 6.18356 6.22192 6.26894 6.28569 6.40943 6.47964 6.61562 6.67129 6.93446 7.20989 7.26141 7.42167 7.78773 8.13203 8.40043 8.62010 9.04239 9.59801 11.07985 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.003001 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.368532 B = 9327.425529 C = 9910.956444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.689 5.689 11 C 0.066 3.934 12 C -0.082 4.082 13 H 0.088 0.912 14 C -0.120 4.120 15 C -0.117 4.117 16 C 0.061 3.939 17 N -0.488 5.488 18 C 0.119 3.881 19 C -0.145 4.145 20 C -0.097 4.097 21 C -0.154 4.154 22 C -0.093 4.093 23 C -0.173 4.173 24 C 0.058 3.942 25 H 0.261 0.739 26 H -0.015 1.015 27 H 0.027 0.973 28 H 0.328 0.672 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.044 0.956 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -23.530 -2.027 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.320 5.320 11 C -0.065 4.065 12 C -0.101 4.101 13 H 0.106 0.894 14 C -0.158 4.158 15 C -0.155 4.155 16 C -0.064 4.064 17 N -0.202 5.202 18 C 0.021 3.979 19 C -0.165 4.165 20 C -0.116 4.116 21 C -0.173 4.173 22 C -0.112 4.112 23 C -0.194 4.194 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.145 0.855 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.062 0.938 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.612 -23.211 -0.997 23.686 hybrid contribution -0.580 0.787 -1.361 1.675 sum 4.032 -22.424 -2.357 22.906 Atomic orbital electron populations 1.69961 1.06101 1.26788 1.50949 1.24999 0.94880 0.99392 0.95352 0.86482 0.79822 0.82999 0.78014 1.20736 1.21226 1.19741 1.21193 0.93514 0.90261 1.50287 0.91967 1.19548 0.90617 0.87416 0.95718 1.60667 1.21198 1.01157 1.48930 1.21841 0.94788 0.90177 0.99688 1.21233 0.97770 0.92292 0.98830 0.89401 1.21680 0.98071 0.98658 0.97349 1.21625 0.98214 0.93498 1.02167 1.22229 0.96857 0.99285 0.88071 1.58948 1.26824 1.01768 1.32684 1.19051 0.91635 0.89780 0.97482 1.20787 0.99613 0.91381 1.04766 1.20986 0.94850 0.97216 0.98519 1.21039 0.94268 0.98245 1.03762 1.21019 0.99692 0.92297 0.98189 1.21406 0.93581 0.98816 1.05611 1.22315 0.92934 0.90003 1.01644 0.92914 0.99705 0.95450 0.85504 0.96536 0.91724 0.92499 0.90663 0.91256 0.90806 0.90376 0.94062 0.85908 0.86142 0.86427 0.86167 0.85392 0.93789 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.70 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.13 5.44 -4.98 -0.03 5.11 16 10 N -0.69 -14.77 6.49 -115.06 -0.75 -15.52 16 11 C 0.07 1.15 5.15 -3.83 -0.02 1.13 16 12 C -0.08 -1.16 2.56 -90.54 -0.23 -1.39 16 13 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.12 -1.53 5.00 -26.61 -0.13 -1.66 16 15 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 16 C 0.06 0.64 5.26 -3.84 -0.02 0.62 16 17 N -0.49 -5.86 4.70 -171.15 -0.80 -6.67 16 18 C 0.12 1.39 5.64 -83.79 -0.47 0.92 16 19 C -0.15 -1.51 9.16 -39.38 -0.36 -1.87 16 20 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 21 C -0.15 -1.41 10.04 -39.55 -0.40 -1.81 16 22 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 23 C -0.17 -1.95 8.82 -39.38 -0.35 -2.29 16 24 C 0.06 0.73 3.43 -3.84 -0.01 0.72 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.33 6.66 7.04 -39.29 -0.28 6.39 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.02 6.80 -51.92 -0.35 0.67 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.72 6.71 -51.93 -0.35 0.37 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.12 1.13 7.15 -52.49 -0.38 0.75 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.38 5.81 -52.49 -0.30 1.08 16 42 H 0.04 0.55 7.74 -51.92 -0.40 0.14 16 43 H 0.08 1.04 6.98 -51.93 -0.36 0.68 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.60 338.58 -11.17 -41.78 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.04 Total: 2.93 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.40 Total: -18.07 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.81 Total: -48.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.60 -11.17 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572753013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.970 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds