Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47150 * 270.00215 * 3 2 1 5 5 H 1.48502 * 109.47106 * 30.00213 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00112 * 3 2 1 7 7 C 1.37885 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99723 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.46890 * 111.00219 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47363 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.53205 * 54.89989 * 12 11 10 14 14 C 1.53113 * 109.50227 * 294.80531 * 12 11 10 15 15 C 1.53126 * 109.16099 * 182.40128 * 14 12 11 16 16 C 1.53036 * 109.27439 * 57.65435 * 15 14 12 17 17 N 1.46842 * 109.52507 * 300.81704 * 16 15 14 18 18 C 1.39675 * 111.00247 * 185.84095 * 17 16 15 19 19 C 1.38914 * 120.07282 * 55.79409 * 18 17 16 20 20 C 1.38100 * 119.92419 * 180.02562 * 19 18 17 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 C 1.46851 * 111.19488 * 61.74384 * 17 16 15 25 25 H 0.96996 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47331 * 59.99981 * 9 7 2 27 27 H 1.09000 * 109.47013 * 299.99801 * 9 7 2 28 28 H 1.00898 * 110.99797 * 303.95631 * 10 9 7 29 29 H 1.09001 * 109.47227 * 60.00097 * 11 10 9 30 30 H 1.09002 * 109.47604 * 299.99765 * 11 10 9 31 31 H 1.09001 * 109.52655 * 302.30619 * 14 12 11 32 32 H 1.09009 * 109.52415 * 62.49617 * 14 12 11 33 33 H 1.09006 * 109.49953 * 177.59648 * 15 14 12 34 34 H 1.08996 * 109.50410 * 297.71304 * 15 14 12 35 35 H 1.09002 * 109.45809 * 180.80460 * 16 15 14 36 36 H 1.08995 * 109.46614 * 60.84054 * 16 15 14 37 37 H 1.07999 * 120.03435 * 0.04102 * 19 18 17 38 38 H 1.08001 * 119.95830 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 41 41 H 1.07999 * 120.04053 * 180.27967 * 23 22 21 42 42 H 1.09008 * 109.45813 * 58.27720 * 24 17 16 43 43 H 1.09002 * 109.46381 * 178.23617 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5304 -6.0430 -0.0006 13 1 3.2138 -5.9178 0.8394 14 6 3.3214 -6.0170 -1.3113 15 6 4.3028 -7.1924 -1.3294 16 6 3.5268 -8.5010 -1.1646 17 7 2.7877 -8.4768 0.1041 18 6 2.1736 -9.7071 0.3492 19 6 2.9313 -10.8712 0.3713 20 6 2.3209 -12.0861 0.6135 21 6 0.9570 -12.1445 0.8343 22 6 0.1989 -10.9883 0.8077 23 6 0.8038 -9.7694 0.5717 24 6 1.8059 -7.3850 0.1258 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8406 -3.5486 -0.7819 29 1 0.8803 -4.9817 -0.8897 30 1 0.8809 -4.9813 0.8903 31 1 2.6345 -6.1031 -2.1532 32 1 3.8738 -5.0801 -1.3850 33 1 4.8389 -7.2041 -2.2785 34 1 5.0140 -7.0853 -0.5104 35 1 4.2240 -9.3389 -1.1628 36 1 2.8256 -8.6141 -1.9913 37 1 3.9966 -10.8261 0.1996 38 1 2.9094 -12.9915 0.6304 39 1 0.4821 -13.0960 1.0230 40 1 -0.8668 -11.0381 0.9757 41 1 0.2119 -8.8662 0.5556 42 1 1.1127 -7.5034 -0.7071 43 1 1.2530 -7.4123 1.0648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572753013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = 2.685721 kcal Electronic energy + Delta-G solvation = -20632.177076 eV Core-core repulsion = 17675.538431 eV Total energy + Delta-G solvation = -2956.638645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37913 -39.14954 -37.18978 -35.13571 -34.02911 -32.71070 -31.57719 -29.97607 -28.78985 -26.18480 -25.58909 -23.87873 -23.23789 -22.43744 -21.73574 -20.62732 -18.75413 -18.36322 -16.85303 -16.69946 -16.60629 -16.21994 -15.97133 -15.54985 -15.10244 -15.01974 -14.79430 -14.58693 -14.37028 -14.14388 -13.98080 -13.55972 -13.29745 -13.16499 -12.89593 -12.65936 -12.50208 -12.31375 -12.11383 -12.03129 -11.85791 -11.70494 -11.55109 -11.24428 -11.11696 -10.67662 -10.60762 -9.83793 -9.14176 -8.75975 -8.23991 -6.35537 0.48187 0.50808 1.40666 1.42710 1.54623 2.39101 2.62451 2.94938 3.09328 3.58150 3.71844 3.74985 3.94442 4.06364 4.10202 4.20711 4.28860 4.35209 4.40979 4.46588 4.52594 4.55197 4.60203 4.67207 4.73550 4.80053 4.87946 4.92396 5.02345 5.09738 5.17102 5.19390 5.25342 5.29086 5.38586 5.46552 5.54582 5.60801 5.67816 5.90540 6.00200 6.05923 6.38077 6.42962 6.71188 6.87852 7.35654 8.87845 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.003001 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.368532 B = 9327.425529 C = 9910.956444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.687 5.687 11 C 0.068 3.932 12 C -0.069 4.069 13 H 0.075 0.925 14 C -0.119 4.119 15 C -0.110 4.110 16 C 0.061 3.939 17 N -0.495 5.495 18 C 0.098 3.902 19 C -0.152 4.152 20 C -0.098 4.098 21 C -0.156 4.156 22 C -0.102 4.102 23 C -0.192 4.192 24 C 0.067 3.933 25 H 0.266 0.734 26 H -0.040 1.040 27 H -0.002 1.002 28 H 0.336 0.664 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -24.809 -2.408 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.318 5.318 11 C -0.062 4.062 12 C -0.089 4.089 13 H 0.093 0.907 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.064 4.064 17 N -0.209 5.209 18 C 0.000 4.000 19 C -0.173 4.173 20 C -0.116 4.116 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.213 4.213 24 C -0.060 4.060 25 H 0.074 0.926 26 H -0.022 1.022 27 H 0.016 0.984 28 H 0.154 0.846 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.062 0.938 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.077 -24.523 -1.383 25.303 hybrid contribution -1.086 1.075 -1.224 1.958 sum 4.991 -23.448 -2.608 24.115 Atomic orbital electron populations 1.70092 1.07872 1.28068 1.51485 1.25989 0.95810 1.03504 0.94508 0.85302 0.78479 0.77781 0.78556 1.19528 1.20690 1.18834 1.21550 0.93844 0.91388 1.50695 0.91662 1.19201 0.90669 0.89029 0.93092 1.60534 1.20463 1.01409 1.49414 1.21883 0.95592 0.89557 0.99207 1.21046 0.96666 0.91774 0.99376 0.90669 1.21661 0.98340 0.99429 0.96231 1.21581 0.97531 0.92406 1.03204 1.22298 0.96957 0.99750 0.87426 1.58980 1.26624 1.01744 1.33589 1.19219 0.92064 0.90008 0.98665 1.20997 1.00180 0.91355 1.04742 1.21340 0.95191 0.97750 0.97361 1.21393 0.94460 0.98943 1.02660 1.21286 1.00728 0.92141 0.97903 1.21517 0.93768 0.99388 1.06646 1.22120 0.92923 0.89536 1.01437 0.92569 1.02224 0.98383 0.84580 0.96558 0.92604 0.92435 0.91584 0.89137 0.91117 0.88626 0.94219 0.84849 0.83549 0.84054 0.84655 0.85953 0.93764 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.16 9.32 25.60 0.24 -30.92 16 8 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.45 5.44 85.56 0.47 11.91 16 10 N -0.69 -30.26 6.49 -517.95 -3.36 -33.62 16 11 C 0.07 2.46 5.15 86.31 0.44 2.90 16 12 C -0.07 -1.99 2.56 -10.74 -0.03 -2.01 16 13 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 14 C -0.12 -2.96 5.00 30.67 0.15 -2.81 16 15 C -0.11 -2.15 6.09 30.65 0.19 -1.96 16 16 C 0.06 1.18 5.26 86.33 0.45 1.63 16 17 N -0.49 -11.54 4.70 -695.40 -3.27 -14.81 16 18 C 0.10 2.21 5.64 38.21 0.22 2.43 16 19 C -0.15 -2.89 9.16 22.40 0.21 -2.68 16 20 C -0.10 -1.55 10.04 22.25 0.22 -1.33 16 21 C -0.16 -2.48 10.04 22.29 0.22 -2.26 16 22 C -0.10 -1.89 10.04 22.25 0.22 -1.66 16 23 C -0.19 -4.26 8.82 22.40 0.20 -4.06 16 24 C 0.07 1.71 3.43 86.32 0.30 2.00 16 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.04 -2.35 8.14 -2.39 -0.02 -2.37 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.34 13.87 7.04 -89.70 -0.63 13.24 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.76 6.80 -2.38 -0.02 1.75 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.53 6.71 -2.39 -0.02 1.52 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.13 2.15 7.15 -2.91 -0.02 2.13 16 38 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.12 2.72 5.81 -2.91 -0.02 2.70 16 42 H 0.04 1.11 7.74 -2.38 -0.02 1.09 16 43 H 0.08 2.02 6.98 -2.39 -0.02 2.00 16 Total: -1.00 -66.11 338.58 -0.01 -66.12 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.35 Total: 20.99 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.96 Total: -28.36 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -6.34 Total: -105.41 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.11 -0.01 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572753013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.802 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds