Wall clock time and date at job start Mon Mar 30 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46659 * 2 1 4 4 C 1.53000 * 109.47119 * 240.00235 * 2 1 3 5 5 C 1.52991 * 109.47044 * 120.00068 * 2 1 3 6 6 N 1.46496 * 109.47598 * 60.00080 * 5 2 1 7 7 C 1.46494 * 120.00184 * 270.00095 * 6 5 2 8 8 C 1.50700 * 109.47184 * 269.99903 * 7 6 5 9 9 H 1.07997 * 120.00149 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00225 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99742 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00204 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47088 * 59.99712 * 12 10 8 14 14 H 1.48502 * 109.47053 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46988 * 299.99917 * 12 10 8 16 16 C 1.38555 * 119.99915 * 89.99809 * 6 5 2 17 17 C 1.39823 * 120.49204 * 5.00182 * 16 6 5 18 18 C 1.38261 * 118.48265 * 180.02562 * 17 16 6 19 19 N 1.32349 * 119.28941 * 359.97438 * 18 17 16 20 20 C 1.32564 * 120.94428 * 0.02562 * 19 18 17 21 21 C 1.43198 * 119.17159 * 179.72103 * 20 19 18 22 22 N 7.66531 * 90.19473 * 181.33905 * 2 1 3 23 23 N 1.32607 * 121.65312 * 0.02562 * 20 19 18 24 24 H 1.09001 * 109.47216 * 300.00179 * 1 2 3 25 25 H 1.09000 * 109.47318 * 59.99827 * 1 2 3 26 26 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47637 * 299.99631 * 3 2 1 29 29 H 1.09001 * 109.47453 * 59.99965 * 3 2 1 30 30 H 1.09000 * 109.46925 * 299.99862 * 4 2 1 31 31 H 1.09000 * 109.47076 * 59.99789 * 4 2 1 32 32 H 1.08996 * 109.46840 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47363 * 299.99830 * 5 2 1 34 34 H 1.09005 * 109.46976 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47331 * 29.99911 * 7 6 5 36 36 H 1.09000 * 109.47430 * 149.99721 * 7 6 5 37 37 H 0.97000 * 119.99757 * 180.02562 * 11 10 8 38 38 H 1.07998 * 120.75709 * 359.97438 * 17 16 6 39 39 H 1.08002 * 120.35888 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 0.2717 -2.4268 1.8836 8 6 0.5025 -2.7748 3.3316 9 1 1.5027 -2.7566 3.7385 10 6 -0.5630 -3.1175 4.1366 11 7 -1.7810 -3.1402 3.6409 12 14 -0.2768 -3.5495 5.9313 13 1 0.3405 -2.3917 6.6267 14 1 -1.5744 -3.8782 6.5743 15 1 0.6309 -4.7214 6.0196 16 6 2.3005 -3.1019 0.6493 17 6 3.5700 -2.8245 0.1329 18 6 4.2809 -3.8529 -0.4575 19 7 3.7438 -5.0611 -0.5159 20 6 2.5378 -5.2958 -0.0180 21 6 1.9907 -6.6161 -0.1072 22 7 1.5561 -7.6632 -0.1791 23 7 1.8230 -4.3372 0.5553 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2494 35 1 -0.3945 -1.5666 1.8184 36 1 -0.1816 -3.2768 1.3734 37 1 -2.5307 -3.3809 4.2074 38 1 3.9853 -1.8293 0.1931 39 1 5.2643 -3.6725 -0.8658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576718225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:17 Heat of formation + Delta-G solvation = 85.591670 kcal Electronic energy + Delta-G solvation = -21453.679367 eV Core-core repulsion = 18397.095450 eV Total energy + Delta-G solvation = -3056.583917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.78722 -38.39982 -36.27632 -35.07957 -32.97094 -32.60077 -31.04611 -28.02570 -27.19867 -26.91522 -25.90816 -24.79784 -23.61895 -21.43875 -19.49628 -18.28044 -17.25943 -16.63124 -16.40861 -15.24019 -14.88625 -14.80196 -14.52943 -14.28454 -14.14273 -13.57901 -13.13913 -12.89863 -12.78887 -12.62820 -12.49872 -12.23290 -12.04874 -11.62601 -11.45609 -11.35202 -11.28479 -10.92312 -10.80609 -10.71479 -10.52254 -10.45236 -10.25845 -10.05904 -9.71794 -9.34252 -8.82739 -8.49191 -7.28495 -6.11178 -4.17586 0.86803 1.72863 2.68361 3.11648 3.26305 3.29251 3.32013 3.35590 3.74726 4.33756 4.39032 4.76621 4.88204 4.92009 4.97681 5.12081 5.22601 5.34022 5.40886 5.56520 5.61078 5.67892 5.79836 5.86863 5.90688 6.02663 6.04269 6.14755 6.22105 6.30541 6.36247 6.48473 6.62787 6.84251 7.21707 7.35416 7.56650 7.72444 7.90252 8.00124 8.12802 8.51683 8.85897 9.47392 10.95172 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.008679 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.464922 B = 3225.560432 C = 5132.577738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.130 3.870 6 N -0.559 5.559 7 C 0.244 3.756 8 C -0.531 4.531 9 H 0.056 0.944 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.456 3.544 17 C -0.286 4.286 18 C 0.170 3.830 19 N -0.548 5.548 20 C 0.430 3.570 21 C 0.301 3.699 22 N -0.383 5.383 23 N -0.523 5.523 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.265 0.735 38 H 0.145 0.855 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 8.712 -8.396 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.006 3.994 6 N -0.264 5.264 7 C 0.125 3.875 8 C -0.570 4.570 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.210 3.790 17 C -0.317 4.317 18 C 0.009 3.991 19 N -0.272 5.272 20 C 0.158 3.842 21 C -0.019 4.019 22 N -0.062 5.062 23 N -0.249 5.249 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.543 6.433 -8.369 13.579 hybrid contribution 0.522 1.041 1.261 1.716 sum 9.064 7.474 -7.107 13.731 Atomic orbital electron populations 1.21968 0.93848 1.03070 1.01097 1.21040 0.96936 0.95194 0.95741 1.21799 1.00614 0.95168 1.01894 1.21976 1.00460 1.00595 0.96639 1.21625 0.98564 0.81305 0.97946 1.47249 1.22410 1.03699 1.53090 1.19592 0.77821 0.97799 0.92269 1.21362 0.93673 1.47261 0.94660 0.92622 1.24882 0.94980 0.95176 0.98693 1.69905 0.98686 1.48006 1.36343 0.86609 0.77482 0.78984 0.84668 1.20259 1.21131 1.20230 1.18363 0.87497 0.86697 0.86467 1.22411 0.96681 1.02840 1.09744 1.22645 0.98406 0.86393 0.91615 1.68143 1.11708 1.24077 1.23241 1.16884 0.87263 0.87395 0.92646 1.24093 0.92829 0.91019 0.93943 1.81165 1.07347 1.10884 1.06783 1.67878 1.36596 1.00067 1.20382 0.92379 0.93493 0.91318 0.92778 0.92634 0.92430 0.92612 0.93125 0.92626 0.89293 0.91179 0.93952 0.93144 0.92574 0.83747 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.23 37.16 0.27 -1.74 16 2 C -0.09 -1.07 0.84 -154.51 -0.13 -1.20 16 3 C -0.14 -1.32 8.47 37.16 0.31 -1.01 16 4 C -0.14 -1.63 6.98 37.16 0.26 -1.37 16 5 C 0.13 1.85 4.53 -4.05 -0.02 1.83 16 6 N -0.56 -10.29 2.06 -175.03 -0.36 -10.65 16 7 C 0.24 5.68 4.14 -5.20 -0.02 5.66 16 8 C -0.53 -13.94 9.39 -34.44 -0.32 -14.27 16 9 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 12 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.46 8.16 5.86 -154.88 -0.91 7.25 16 17 C -0.29 -3.89 7.42 -38.98 -0.29 -4.18 16 18 C 0.17 2.17 11.28 -17.32 -0.20 1.97 16 19 N -0.55 -8.75 10.32 -12.70 -0.13 -8.88 16 20 C 0.43 7.89 7.40 -159.18 -1.18 6.72 16 21 C 0.30 5.64 15.74 -22.47 -0.35 5.29 16 22 N -0.38 -7.41 18.54 41.84 0.78 -6.63 16 23 N -0.52 -10.63 9.12 -11.84 -0.11 -10.74 16 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.16 5.99 -51.93 -0.31 0.85 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.80 6.10 -51.93 -0.32 0.48 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 6.69 -51.93 -0.35 0.21 16 33 H 0.09 1.35 8.07 -51.93 -0.42 0.94 16 34 H 0.07 0.84 6.04 -51.93 -0.31 0.52 16 35 H 0.04 1.01 6.05 -51.93 -0.31 0.69 16 36 H 0.05 1.34 7.33 -51.93 -0.38 0.96 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.14 1.54 5.09 -52.49 -0.27 1.28 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -29.47 323.25 -7.08 -36.55 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.17 Total: -2.82 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.67 Total: 6.64 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.91 Total: -61.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.47 -7.08 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576718225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.138 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds