Wall clock time and date at job start Mon Mar 30 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46659 * 2 1 4 4 C 1.53000 * 109.47119 * 240.00235 * 2 1 3 5 5 C 1.52991 * 109.47044 * 120.00068 * 2 1 3 6 6 N 1.46496 * 109.47598 * 60.00080 * 5 2 1 7 7 C 1.46494 * 120.00184 * 270.00095 * 6 5 2 8 8 C 1.50700 * 109.47184 * 269.99903 * 7 6 5 9 9 H 1.07997 * 120.00149 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00225 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99742 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00204 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47088 * 59.99712 * 12 10 8 14 14 H 1.48502 * 109.47053 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46988 * 299.99917 * 12 10 8 16 16 C 1.38555 * 119.99915 * 89.99809 * 6 5 2 17 17 C 1.39823 * 120.49204 * 5.00182 * 16 6 5 18 18 C 1.38261 * 118.48265 * 180.02562 * 17 16 6 19 19 N 1.32349 * 119.28941 * 359.97438 * 18 17 16 20 20 C 1.32564 * 120.94428 * 0.02562 * 19 18 17 21 21 C 1.43198 * 119.17159 * 179.72103 * 20 19 18 22 22 N 7.66531 * 90.19473 * 181.33905 * 2 1 3 23 23 N 1.32607 * 121.65312 * 0.02562 * 20 19 18 24 24 H 1.09001 * 109.47216 * 300.00179 * 1 2 3 25 25 H 1.09000 * 109.47318 * 59.99827 * 1 2 3 26 26 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47637 * 299.99631 * 3 2 1 29 29 H 1.09001 * 109.47453 * 59.99965 * 3 2 1 30 30 H 1.09000 * 109.46925 * 299.99862 * 4 2 1 31 31 H 1.09000 * 109.47076 * 59.99789 * 4 2 1 32 32 H 1.08996 * 109.46840 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47363 * 299.99830 * 5 2 1 34 34 H 1.09005 * 109.46976 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47331 * 29.99911 * 7 6 5 36 36 H 1.09000 * 109.47430 * 149.99721 * 7 6 5 37 37 H 0.97000 * 119.99757 * 180.02562 * 11 10 8 38 38 H 1.07998 * 120.75709 * 359.97438 * 17 16 6 39 39 H 1.08002 * 120.35888 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 0.2717 -2.4268 1.8836 8 6 0.5025 -2.7748 3.3316 9 1 1.5027 -2.7566 3.7385 10 6 -0.5630 -3.1175 4.1366 11 7 -1.7810 -3.1402 3.6409 12 14 -0.2768 -3.5495 5.9313 13 1 0.3405 -2.3917 6.6267 14 1 -1.5744 -3.8782 6.5743 15 1 0.6309 -4.7214 6.0196 16 6 2.3005 -3.1019 0.6493 17 6 3.5700 -2.8245 0.1329 18 6 4.2809 -3.8529 -0.4575 19 7 3.7438 -5.0611 -0.5159 20 6 2.5378 -5.2958 -0.0180 21 6 1.9907 -6.6161 -0.1072 22 7 1.5561 -7.6632 -0.1791 23 7 1.8230 -4.3372 0.5553 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2494 35 1 -0.3945 -1.5666 1.8184 36 1 -0.1816 -3.2768 1.3734 37 1 -2.5307 -3.3809 4.2074 38 1 3.9853 -1.8293 0.1931 39 1 5.2643 -3.6725 -0.8658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576718225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:17 Heat of formation + Delta-G solvation = 68.934433 kcal Electronic energy + Delta-G solvation = -21454.401679 eV Core-core repulsion = 18397.095450 eV Total energy + Delta-G solvation = -3057.306229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06770 -39.58974 -37.73686 -36.36771 -34.83588 -33.94319 -32.46204 -29.62008 -28.09176 -28.04434 -27.25942 -26.06408 -25.26690 -22.91196 -20.71869 -19.43489 -18.75612 -18.44748 -17.66180 -16.65735 -16.59206 -15.99421 -15.80965 -15.54818 -15.28544 -14.74601 -14.51469 -14.33126 -14.20876 -14.10963 -14.08647 -13.44103 -13.19553 -13.01630 -12.87966 -12.62633 -12.49301 -12.46534 -12.42075 -12.15563 -11.80820 -11.68534 -11.56463 -11.46410 -11.26089 -10.70226 -10.58345 -10.14369 -8.73061 -8.13363 -6.31658 -0.43500 0.52663 1.23570 1.35589 1.38557 1.45075 1.71404 1.97975 2.30862 2.44527 3.05357 3.11588 3.62768 3.78867 3.89639 3.92797 4.06444 4.16645 4.38738 4.52826 4.62753 4.71557 4.80577 4.84858 4.97031 5.01199 5.04876 5.13594 5.15447 5.27466 5.29098 5.41785 5.44724 5.51819 5.58544 5.68854 5.83432 6.08055 6.13486 6.37762 6.61611 6.80824 7.23081 7.38019 8.86588 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.008679 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.464922 B = 3225.560432 C = 5132.577738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.134 4.134 5 C 0.126 3.874 6 N -0.570 5.570 7 C 0.269 3.731 8 C -0.535 4.535 9 H 0.051 0.949 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.954 3.046 13 H -0.261 1.261 14 H -0.284 1.284 15 H -0.281 1.281 16 C 0.433 3.567 17 C -0.260 4.260 18 C 0.178 3.822 19 N -0.545 5.545 20 C 0.412 3.588 21 C 0.305 3.695 22 N -0.405 5.405 23 N -0.572 5.572 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.030 0.970 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.185 0.815 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.396 10.648 -8.999 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.191 4.191 5 C 0.004 3.996 6 N -0.277 5.277 7 C 0.148 3.852 8 C -0.574 4.574 9 H 0.069 0.931 10 C -0.186 4.186 11 N -0.565 5.565 12 Si 0.779 3.221 13 H -0.186 1.186 14 H -0.209 1.209 15 H -0.207 1.207 16 C 0.189 3.811 17 C -0.289 4.289 18 C 0.018 3.982 19 N -0.268 5.268 20 C 0.141 3.859 21 C -0.014 4.014 22 N -0.084 5.084 23 N -0.299 5.299 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.202 0.798 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.047 8.383 -8.991 17.212 hybrid contribution -0.496 0.458 1.362 1.521 sum 11.551 8.841 -7.629 16.425 Atomic orbital electron populations 1.21922 0.96091 1.00518 1.01208 1.21012 0.95043 0.97028 0.95198 1.21751 1.02086 0.92681 1.02287 1.21932 1.02082 0.98601 0.96494 1.21879 1.00333 0.79058 0.98360 1.47015 1.21200 1.05520 1.53962 1.18876 0.80212 0.95435 0.90721 1.21705 0.93244 1.46232 0.96193 0.93052 1.25684 0.94861 0.95394 1.02687 1.70030 0.99430 1.49406 1.37673 0.85678 0.77280 0.78845 0.80280 1.18598 1.20899 1.20703 1.18772 0.89113 0.85845 0.87380 1.22781 0.94156 1.04858 1.07136 1.23605 0.99869 0.84643 0.90088 1.68227 1.10322 1.25924 1.22318 1.16804 0.88288 0.86751 0.94041 1.24405 0.92371 0.91281 0.93306 1.81139 1.07928 1.11614 1.07707 1.67719 1.38544 1.01752 1.21935 0.93632 0.91945 0.95161 0.90324 0.91654 0.92741 0.95742 0.92140 0.89801 0.90890 0.87793 0.95250 0.97447 0.92720 0.79835 0.75923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 7.23 71.98 0.52 -3.50 16 2 C -0.08 -1.82 0.84 -52.18 -0.04 -1.87 16 3 C -0.13 -2.04 8.47 71.98 0.61 -1.43 16 4 C -0.13 -2.73 6.98 71.98 0.50 -2.22 16 5 C 0.13 3.38 4.53 86.38 0.39 3.77 16 6 N -0.57 -21.10 2.06 -707.68 -1.46 -22.55 16 7 C 0.27 13.21 4.14 85.63 0.35 13.57 16 8 C -0.53 -28.98 9.39 25.60 0.24 -28.74 16 9 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 12 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 C 0.43 15.18 5.86 133.27 0.78 15.96 16 17 C -0.26 -6.04 7.42 22.66 0.17 -5.87 16 18 C 0.18 3.72 11.28 84.62 0.95 4.67 16 19 N -0.54 -16.17 10.32 -194.08 -2.00 -18.17 16 20 C 0.41 15.17 7.40 136.10 1.01 16.18 16 21 C 0.31 11.79 15.74 88.33 1.39 13.18 16 22 N -0.41 -16.14 18.54 19.00 0.35 -15.79 16 23 N -0.57 -23.81 9.12 -191.36 -1.74 -25.56 16 24 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 1.08 5.99 -2.39 -0.01 1.07 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 0.65 6.10 -2.39 -0.01 0.64 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.21 6.69 -2.39 -0.02 1.19 16 33 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 34 H 0.10 2.03 6.04 -2.38 -0.01 2.02 16 35 H 0.03 1.50 6.05 -2.39 -0.01 1.49 16 36 H 0.01 0.43 7.33 -2.39 -0.02 0.41 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.18 2.75 5.09 -2.91 -0.01 2.73 16 39 H 0.22 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -69.27 323.25 5.86 -63.41 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.06 Total: 1.91 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 7.34 Total: 24.89 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -4.57 Total: -136.47 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.27 5.86 -63.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576718225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.345 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds